Array 1 164278-160161 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULZ01000001.1 Porcincola intestinalis strain Oil+RF-744-WCA-WT-11 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 164277 33 100.0 34 ................................. AATTCCCGTACAATTGCAGTCGCAACCTTCAGCT 164210 33 100.0 33 ................................. GCATCCCAGCAGGCATGATGCTGCGTGTACATG 164144 33 100.0 34 ................................. TTACTACATTGTTTCACTGCGCTTTATGGCAAAT 164077 33 100.0 35 ................................. ATCATCAAAAATGATGATGTTCCGTCTCGAATCAT 164009 33 100.0 34 ................................. CTGATCACGCGACATGACACCAAAAAGGGAAAAG 163942 33 100.0 34 ................................. ATACCAATAACTGGATCACGCAGATGTTTTTCTA 163875 33 100.0 33 ................................. GGTTCTCCGCCTGCGCCAGCATTTGAAGCATAG 163809 33 100.0 33 ................................. ACCTGATTAAAGCTCTCTTCTGAGTGCCCGAGC 163743 33 100.0 34 ................................. TATTCTTTGCTTCGCCATCACTCATCTTTGCTAC 163676 33 100.0 35 ................................. ACACGTACGCAAACACCGGTTGGGGCACGTTCTGC 163608 33 100.0 34 ................................. GCCGTTTCTGGCGAGAATTTCCTGCTGCTGCCTG 163541 33 100.0 34 ................................. TTGATATCGTTAATCACATCTTCCGAAAATCCTC 163474 33 100.0 34 ................................. GATGAAGACGCTGTTGAAAACCCTCGATGACGTG 163407 33 100.0 33 ................................. TTTGAGCATTTCTATATTGATTTCTTTGATGCA 163341 33 100.0 33 ................................. AGTCAGCAGTGCCCATCGCTTACAGGTCATTCC 163275 33 100.0 35 ................................. TTCCTCTTTCAGCAGACCATTGTACAGCTCCTGCG 163207 33 100.0 34 ................................. CTGATAGCTTAGCTGTGCCGGATCGATATACTCT 163140 33 100.0 34 ................................. GGAGTTAAGCGGAGGATAAGAAATGCGCAGCTAG 163073 33 100.0 34 ................................. CCCGAATGGTCGCCTGACAGCGTGGCGTACAAGG 163006 33 100.0 33 ................................. TCTGACGTGCAGACTGTTGAACAGCTGAGCAAT 162940 33 100.0 34 ................................. TTTAGTTCCGCGATCAGCTGTCCCGCTGTCCGGT 162873 33 100.0 34 ................................. TCAATGTCTGGAGATTTCAACGCAAAGACAAAGC 162806 33 100.0 33 ................................. CATTCCATCTTTGCGTGAAGCTTCAGGCTCTCA 162740 33 100.0 34 ................................. ACGCAGGCATGTCTCGATCAGCTTGCCAAAAGAA 162673 33 100.0 36 ................................. ACTGTACTCGGACGGCGTGACAACGACATATCGGCG 162604 33 100.0 35 ................................. AAACCTGGACGATCTGGGAATCCTGGATGTAGTGG 162536 33 100.0 34 ................................. TCTTCAGGGGCGACGATCTGGACGGATTTTCTGT 162469 33 100.0 34 ................................. ACTCATAAAACAGCTTGTGCAGATATTCACTGAC 162402 33 100.0 35 ................................. ACTATATCCATCGGTGATGATGATGCTGCATTCAT 162334 33 100.0 34 ................................. GCTCTACAACAAGGCCGTTGCTGAGCACCACATG 162267 33 100.0 34 ................................. TTCCCGAGGAATGACAATGGCGATCCGATCCTGT 162200 33 100.0 33 ................................. TTACCTTTCGTCGCTCCCTTGTTGTCGACATTG 162134 33 100.0 35 ................................. ACGAACACAAGCGGGATGTAGTGGATGAATCCATG 162066 33 100.0 33 ................................. TTTGATGCATCGCGCCAATTCAGGCTGGATGTG 162000 33 100.0 33 ................................. TACAGGTTAAAATTGAAGTCGCTTGTGAATCCC 161934 33 100.0 33 ................................. CCTGACTTGATGTCTTTTTCAACGGACGTCTTA 161868 33 100.0 34 ................................. TTAGCATCTCTTTTGCAAAGCCACTCGCTGTGTT 161801 33 100.0 35 ................................. GGAGTTAAGCGGAGGATAAGAAATGCGCAGCTAGG 161733 33 100.0 34 ................................. TCTGCCTGTCCGCCTCTTTCCCATACAGGCAGAT 161666 33 100.0 33 ................................. TTAGCATCTCTTTTGCAAAGCCACTCGCTGTGT 161600 33 100.0 34 ................................. GATGAAGACGCTGTTGAAAACCCTCGATGACGTG 161533 33 100.0 33 ................................. TCGGACGGGAAGGCGTGACGCCACACATAACAA 161467 33 100.0 34 ................................. GCTAATACCGCACGTTTCCGACTCGGTCGGCTTG 161400 33 100.0 34 ................................. AGATCAGGCACGCAAGGTTGTCCCTGCCTACCTG 161333 33 100.0 35 ................................. CCAAAGACGGAAAAGGGTCTTACGTTCGGACAAAT 161265 33 100.0 34 ................................. AGAGCACGAAAAGTAACGAAAAAAACGCATAATT 161198 33 100.0 34 ................................. TTACGCTTGGCAAGGACATGATTAGCAGTCTTGC 161131 33 100.0 34 ................................. GGCGATAAGCTGCCGAAATGGTGCGAGCCGGACG 161064 33 100.0 33 ................................. TTGAAAAGCTGTTCCCAACGACGGAGCATATCG 160998 33 100.0 34 ................................. TTAAATCAGGCTGATTTTACAGTGCAGGTATTTT 160931 33 100.0 33 ................................. GTAAAAATGTAACTGTCCTTGTCTCGCAGGTAG 160865 33 100.0 34 ................................. AGGTACTGGATGGAATCATCCACCCCGCCGAGAG 160798 33 100.0 35 ................................. AGACCGTACAGCGTCGGGATGATTGTCGCATTGTC 160730 33 100.0 35 ................................. AGACCGTACAGCGTCGGGATGATTGTCGCATTGTC 160662 33 100.0 33 ................................. TTTATTCCTCCTTTGAGATTACAGCAAACACTC 160596 33 100.0 34 ................................. TCATTAATTGTGGATAACTATGTGGATAACTCAT 160529 33 100.0 34 ................................. ATCGGTCCCCAGTTGTACACGCTGCAGTTGTGGA 160462 33 100.0 34 ................................. ACGCTATCATCATATCACGATTGCCAGTGACATT 160395 33 100.0 35 ................................. ACACTGCCTATGCCGAAGGATTGAGTCAGGTTGAA 160327 33 100.0 34 ................................. AGAAATACCGGGAGCATATTACCAGTATAAGTAT 160260 33 100.0 34 ................................. CTAAAAATGATCTCCGACTCCGCAAAAGATAAGT 160193 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 62 33 100.0 34 GTCCCCGCCCGTGTGGGCGGGGTGGATTTAAGC # Left flank : AGCCTTTCGTGAGAATCTAAGGGGATGGTAGAAAGCAGGCGATACAGTATGATGATAATATTGACATATGATGTAAATACGGAGTCTGTGAGCGGAAAGAAAAGACTTCGAAAAGTTGCCCAAATATGTCTGAATTACGGAATTCGCGTTCAGAACTCCGTGTTTGAATGCAACCTCGATGCTTCGCAGCTTGTGACTTTCAGGGCGGCAATACTGGATGTAATCGATGAATCGAAGGATAGTGTACGAATATATAACCTTGGAAACGAATATAAGAAAAAGGTCGAGCATTATGGGATGAAGGTAACACCGGATCAGGAAGGAAGCCTCATTTTATAGTGGTGCGGGATATGATCACTCATACATTACTGGAGCTTTCGCACCTGGAATTGCACTCCTCATAGTTTGATAGAACGACAAAAAATCGCTATATCGGATATCTTTAAACATATCTGCTAATATCAGAAGAGTTATTCTTTAGAGTTTTGTATGTTTTTGCT # Right flank : CACATTATGTTATGCGGCGCCGGGTTCAGCACTGCCTGTGCCATCTCGGCTGTAACTTTGACATCTTCTCCGATGCAATCTTTATATGACTTTGCCAGTAATTCACCTATTTCTTTTTAGATGTATGACGCAGATAACATTTTTAGAAAGAGATTTGCACCCGGAACCATAACATGGTATCATAACCGAGTTCAACTTTCATACGGTATAATTGGAAACGTACACTTCTTCTGGTGATAACGAACAACACGTCCTCACAACACCGGAAGGAGTGTTTTTTATGCCTGAAAATAAGCTTGAAAACTTCGTATTTACAGTTATCATGGCCTTTCTGATGGTCTATGCGATGATCTGCTACAACATTGCGCTCAATATTGGCGGAATGCAGGATGCCGTTTTCCTGATGGCATTCGGTGAACTTCGTATCATGTGGCCGGTGGCTATTGTCCTGGAGCTGTTTGTGATGGAACGGCCCGTCATGGCGCTGACACAGCGTGTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCGCCCGTGTGGGCGGGGTGGATTTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 327739-327178 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULZ01000001.1 Porcincola intestinalis strain Oil+RF-744-WCA-WT-11 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 327738 36 100.0 29 .................................... TGCATACAGCAATTCCAATGACCCCTAGG 327673 36 100.0 29 .................................... TCCCAGAGATTTTGCGGTCGCCTTCTCAC 327608 36 100.0 29 .................................... CATTTCACAATTTCCCTCACCATTCACCG 327543 36 100.0 30 .................................... ATCATCAATGTTGTAAGCGGGTACATTTCG 327477 36 100.0 30 .................................... TCCACGGTCTTGCGTATAATATAGTGCGTT 327411 36 100.0 30 .................................... AAGGTGTAATAATATTACACCTTAGGTATA 327345 36 100.0 30 .................................... GTTGAATACGCTTATGAACATGGTTGAAAA 327279 36 100.0 30 .................................... AAAACAATTGATACTGGTAAATCACAGCCC 327213 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTGAGAACCTTGTAAATTCGTAAAGGTGTCAAGC # Left flank : TGCTGTGTGGCGCTGCTTTTTCAACCCCTCTGCCTTGTCTTCTTCAAGACAAGAGCGGATAAAAGTGACGGTCTCGTCTGTCAGGATCGTTGAGACACGTTCCGGCGTTTTACGTTCCCACGGAACGGCAGCACCTTCACAGTACTTGGCAACTGTGTTCCTTGAGATGCCGAGCGTTTTAGCGATATGGCGCTGACTTTCGCCTGCCAGGTATCGTTTGCGTATTTCGTCATAGTCTTTCATTGTGATAACCACCGATTATCCCTCCGAATGAAGCATTCACTTCATTCAGAGTACTGATAAGGTGGCTCATTTTCAAGTCAGCGTTTTATGCTCAAGTGGCTCACTTTCAGAGTAGCATTTATATTGAGGGAACGGAACCTTTGGACAGAACAGGTGATAAGCGCTATATTATTGATAAGGACATGTGCTTGATTCAGAAAAACCTTTGAATTTATGCTGCAAACCAGGCAGAGGAGGTTCGGTGAAGACCATTTGAG # Right flank : CGCAAGATTACGGTTACAACATAGAAGATGGTCTTTCTTCTATTGTTGATTGCTTTGATGGCATGCTTCCTGCATGGACGATAAGCACAGCACCAAACGCAGCTCTGGTAAATGAAATGCTGGATAAGGCTATTGCTACTTTATCCAAGGAAGAGTATCCTCTGATCCACAGTGATCGAGGCTGCCACTATCGTTGGCCGGGATGGATTGAACGCATGAACAGAGCAGGTCTTAAACGATCCATGTCAAAGAAAGGGTGCTCTCCTGATAATTCAGCTTGTGAAGGATTGTTTGGCAGACTAAAGAACGAAATGTTTTATAGCCGGAAATGGGAAAATATCACCCTGCCAGAATTCATGAGTATCTTAAATGATTACCTCGTTTGGAATAATGAAAAACGGATCAAGGTATCACTCGGTAACATGAGCCCTTTGGAGTACAGACGTAGTCTTGGAATTGCTACTTAGGCAGTCCAAGAAAATGTCCGCCCCCAATTCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAACCTTGTAAATTCGTAAAGGTGTCAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 335795-333915 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULZ01000001.1 Porcincola intestinalis strain Oil+RF-744-WCA-WT-11 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 335794 36 100.0 30 .................................... AGAGGAATTGGCGGACAAATTAGGGCTGCA 335728 36 100.0 30 .................................... TCTTCATGCGTGAGGTATTGCACACAATCG 335662 36 100.0 30 .................................... AACCGGGACTCCTTCTTGTTTGTACTCATG 335596 36 100.0 30 .................................... CAATAAGATGCCTTGCTTATACTGGAGCAA 335530 36 100.0 29 .................................... TATATCCGGTCTGCAAAATCCAGCCCGCC 335465 36 100.0 30 .................................... GTCAGCTGCTGCGCCACATCGTTGTCTTCA 335399 36 100.0 29 .................................... TATCAAGCTTTCAATGTACCGTAAGTACA 335334 36 100.0 29 .................................... TCACGTTTTTTGTATCGCGGCATGACATG 335269 36 100.0 30 .................................... AATTCCGTACCATGTACGACCCTTATAGGT 335203 36 100.0 30 .................................... TGAAGCAGAGACGCCGTCCGCCGAATGTCG 335137 36 100.0 30 .................................... CAAGCTGTGAAGGGAGGAAAGCATGTTTAC 335071 36 100.0 30 .................................... TGTATTTCTCTATATTCCTTTAAAAGGTTG 335005 36 100.0 31 .................................... GCTAGCACTTAGAGAGATGGGCAGACATGCA 334938 36 100.0 30 .................................... CTCCGCAGTGGTCTTTTGGCCGCCTAGCCT 334872 36 100.0 30 .................................... AATATGAGAAGTATAAACATCGGTTTAGTT 334806 36 100.0 30 .................................... GACTGCGACAGCGAGCAACAACATCGACCG 334740 36 100.0 29 .................................... CCGTCCGGCGTCAGGTTAGACACAATCCG 334675 36 100.0 30 .................................... TCACTCGCTGGTTGTCAACGATGCAAAGGC 334609 36 100.0 30 .................................... TAGATCTCTCGGGCCTTGTCCCCGCCCTCG 334543 36 100.0 30 .................................... CGATAAGAATAACCCGGCACGAGACTATTA 334477 36 100.0 30 .................................... TTTCACCACGGTGTGCTGCTTTACCAAGCA 334411 36 100.0 30 .................................... CGTCATGGCGATAAAGCATGACGAAGACGA 334345 36 100.0 30 .................................... AGAAAGCGACTAAAATACTACGCCATCCAG 334279 36 100.0 30 .................................... CGCAAAGGAGGAATAAATAATGCTGAAGAA 334213 36 100.0 30 .................................... CCCAGAGGATGACAGGGCTGTGATAACTGC 334147 36 100.0 30 .................................... GAAACCATCTAGACAGTTCACTTTGCAAAT 334081 36 100.0 30 .................................... AGTGACAGCGAAAAAGCTAATACCCTGCTG 334015 36 100.0 30 .................................... CTCGTTTCGGCTGTTATTCCCAGTCCGTCC 333949 35 94.4 0 ...............................-...A | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.8 30 GTTTGAGAACCTTGTAAATTCGTAAAGGTGTCAAGC # Left flank : ATCGGAAAATTATTGGGAAACTATATAAAACAATAAGCTGTGCAGCAATGGAGTTCCCTCAAGAACGGAGCGAGTTGTTAACAGCGGTAATTCAATATTTTGATAGAATTTTAGGAGCTGTACGGTTTGATGGATTAACCTATGATATTGACTTTAAAGACGAAGATCTATACAAGCTGTTCGATTTAAGAATAGAGGAAGAGGGACTTTCTCTCATAGAGAAACTCTTGATGGAAGTGAGAATCTGCTCAGATTTACTTTTTCTTCCGGTAATGGTTTTTATGAATCTAGGAAGTTTTCTTTCGAATGATGAATATTGCGAATTAGTGGAAAGCTGTGTGAATCATAAGGTATATCTGCTGCTTATTGAGGGGACGGAACCTTTGGACAGAACAGGTGATAAGCGCTATATTATTGATAAGGACATGTGCTTGATTCAGAAAAACCTTTGAATTTATGCTGCAAACCAGGCAGAGGAGGTTCGGTGAAGACCATTTGAG # Right flank : ACTCATTACCGAAGAACATAAAAATCGGCGATAAAAATCTGCTTACCATACCATAGAGAAGATGAATCACCCCTTAAGTTGACAATATAAGTCCTTATTCCGGCCCCGAAACGGATCCGCAAGCTTAAAGGGAGAAACAGACAAAAAATCGTTGAGCTTTTTATTGACATTCGGCGCTTACCATACCACTTAAAAAAGTGGTTGACATTCACAATAATGGTATGACCGAAATCACAGGCGAAGAAGGGAAACGAAGCTGACATGGGGCATTTTTATTTTGTCCGTCACGGACAGACGGTATGGAATGTTGAAAATAAAATCTGTGGTGCAACGGACAGTCCATTGACGGAGCTTGGTCGTGAACAGGCAAGAAAGACCGGGCAGATGCTAAGAAAGAAGATTGATCATGGCGAGATCCATATTGATGAGATTATGACCTCTCCTTTGTCTCGTGCCTTTGACACAGCGGTGGAAATCTCGCATGTAATCGGAGTCCCGGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAACCTTGTAAATTCGTAAAGGTGTCAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //