Array 1 490949-491189 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUF01000002.1 Afifella aestuarii strain JA968 NODE_2_length_1220344_cov_37.859749, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 490949 30 100.0 39 .............................. TTGAGACCTGTCCGGCCTCAGCCGGGCCCGGAGCTACCA 491018 30 100.0 39 .............................. TTGAGACTTGGTGACCACCAGTACGTCGTAGAAACCTCC 491087 30 96.7 43 ....................C......... TTGAGACCCGCAAGATGAGAGGCTGGATAAACACCGACAGTCG 491160 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 4 30 99.2 41 GTGGCAGCCACTTGTCCGCATGGACGCGGA # Left flank : CCCGCGGGCCTGGCCGTCGGGGCGGGCGGAATGAACCTTCTCGTCGGATCGGAGGCGCCAAACGTCGCGTGGATTCCAGACGATGGCGCGGCCGGTCTATGGCGGGCCCAGGTTCTGCAATTCGCTCTTCTGCTTTCCGTCTTCTACGGGCTTGGCTGGGCGGCGCTCAGCCTGATCGTGCATGACGAGGGCAAGGAGGCGGCGCGTCTGCGCGGCGTCACGCTGGGTCTTGCCGTCGCCGCCGCGATCGCTGCCCTGGCGCTGGTCGCGTCCTTCCTGGCCGGGAGTCCCACGGCCGGTGGTGGCTAGCGACCTACGGTGACTGCGCTCAAAGAGATGAAATCGCCCTTGGAAAATGGACAAGTCACTGAGTTAATTTGAGAAAAAGGAAGAAAAGGAGGCAAAAAGGACGTTTGAGACATGCGCAGGAGACGCAAAATGGCTCGCCCTTGGAAAACCGGTCAAAAATGCAAATGGCTGCGGATGCTTACAGAGAGTGA # Right flank : AGGTGCGGCGCGGTGGCGGGCGTTTGCTCGTCGCGGCTGCCGTCGACCGTGTCCTCGCGCGGTCCGTGCTGTTGCGCGGCGCGTCCCGGGCGTCCCCGTCTTGATCAGATGATCCAGTAGCCCTCTTCGCTCTCGAAGGGGGCGCCGTCGCCATAGACGCGGCTGCGTTCAAAACCGTCTGCGCCGATGACATAGACGCGCAGGCTGTCGCCGGGGCCCAGCAGGGCGGCGAGCCTCTGGCCGAGGGCTGCGGCCTTGGCGCGGCTCATGCGCACCTCGAAGACGGAATATTGCACGCGCGTCGCGGCGTTCTCCAGAAGTCGGGCGATACGCCTCCTGCGCCGGTCTTCGGAAACGTCATAGGAGAACACCGTCAGCATCTCACCGCGCGCCATCGCCGCTCTCCTTTCGCCTCGACAACCCCTGTTTGAGGCGGCATTCTCGCCCGGTCGGCGCCATCCGGAAAGGCGCCGCGGCGGTCGCAGGGGGCCAGAAAGCCT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCACTTGTCCGCATGGACGCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 491851-492246 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUF01000002.1 Afifella aestuarii strain JA968 NODE_2_length_1220344_cov_37.859749, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 491851 37 100.0 33 ..................................... CGACTTCGTCGTCGCTCTCCATGGCGCCGCCAT 491921 37 100.0 39 ..................................... TCAGCAGCTTTTGGCTGCCGTGGCTGCGCCTGCCGCCCA 491997 37 100.0 34 ..................................... GGAGGGTGAGGAACAGGCCAATCTCCCGTACCTC 492068 37 100.0 34 ..................................... GCGGCCTAAGCCGCGGTTGCAAACTTCACGCCGC 492139 37 97.3 34 ....................T................ GCAAGCTTGGCGCGCGAAATCCGCTTTTCGTTGC 492210 37 78.4 0 .T..................T..G...A...C.G.GT | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 96.0 35 GGGGCAGCCACTTGTCCGCACGGACGCGGATTGAGAC # Left flank : CTGCGTTCAAAACCGTCTGCGCCGATGACATAGACGCGCAGGCTGTCGCCGGGGCCCAGCAGGGCGGCGAGCCTCTGGCCGAGGGCTGCGGCCTTGGCGCGGCTCATGCGCACCTCGAAGACGGAATATTGCACGCGCGTCGCGGCGTTCTCCAGAAGTCGGGCGATACGCCTCCTGCGCCGGTCTTCGGAAACGTCATAGGAGAACACCGTCAGCATCTCACCGCGCGCCATCGCCGCTCTCCTTTCGCCTCGACAACCCCTGTTTGAGGCGGCATTCTCGCCCGGTCGGCGCCATCCGGAAAGGCGCCGCGGCGGTCGCAGGGGGCCAGAAAGCCTGAAATCGCCCTTGGAAAATGGACAAGTCACTGAGTTAATTTGAGAAAAAGGCAGAAAAGGAGGCAAAAAGGACGTTTGAGAGGTGCGTAGGAGACGCAAAATGGCTCGCCCTTGGAAAACCGGTCAAAAATGCAAGTGGTTGCAGCTGCTTACAGAGAGTGA # Right flank : TTTGCTGGGGATCTGAAGCCCGGCGGCGTGCCCATTCCGGCGAGCGACCGGCAGGGGGCTGAGGGCCGGCCCGCTCGCGGCTCTGCTAATGGTCGATCACTTGGGGCTGGAAGGGCTGGCTCTTCGGGGCACGGCAATGTGCGCCATAGGCACCTGCCTCTTCCTCCATGAGGACGCGCCAGCTACGCTTGCGCCCCGAATGGGGGCTTTTCAGCCGCCGCGCCGCGGCCGTCTCGTAGCCCTCGATGATCGCGCGCCGCGCCTCTGGCCCGATCCACATCGTGCCGTCCTCCCGACCCGAAAACATGTCGGCATCGAGCCGCCCCTGGTTGAAGAGCGAGACGGCGAGCCCTTCCGTCAGGGGCGCGCGGAAACCTTCCATCAGATCCCAGACGCAGGCCTCGCCCCGATCGGAGGCCGCATGCAGCGCGCCGATGCCCGGATGCAGGCCGCGGCTCAGAAGGGCGGCGCGGATATCGCGTGCCAAAAGCGCCGTCAGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGGCAGCCACTTGTCCGCACGGACGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 494635-494887 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAUF01000002.1 Afifella aestuarii strain JA968 NODE_2_length_1220344_cov_37.859749, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 494635 37 100.0 38 ..................................... GAGAAGCTCGAAAAGGGGCGCGGTGGTGGCCGTGATCG 494710 37 100.0 35 ..................................... CAAGCGTTCAGCCTCGCGCGCGTTTTTTCCGCTCT 494782 37 100.0 33 ..................................... CCCGTCGAACTCTCCGGCGATATTTTGCCCCAT 494852 36 86.5 0 ........T.....................-C...CG | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 96.6 36 GCTGCAGCGTGATGTCCGCATGGACGCGGATTGAGAC # Left flank : CGGGCGATAGCTGCCCTCGCGCAGCTGTTTCGACAGGGAGAGGATGCGCCTTGCGGCCGCGCGCGAAAAGGCGGCAAGCGTCTCGCCGTCGCCCCCGGCGCAGCCGCCATTGGCGCGCACCCGCGCCCAGGCCTGATCGAGCGTGGCGGGTTCGGTGACCCGCAAGAAGAGATCTTCAGGCCGCATCGGCCCGTCCCGTAGCGCCATCGGCGTATTCTCTCCCCCAAGGTCGGCAGCATGCGGGGTCTTGCCTCTGCCTGGCGCTGGAAACGCATGGCCCTAAGCTTTGCGGAGACAGCTTTCGCGCTCACGAAAGCTAGCCGAAACGCGCAAAAACCGGAAATCGCCCTTGGAAAAGTGATAAATATCTGTTCGAAAAAGAAAAATTTTCCTGTTAGGAGGATTTCGGGAGGGTTGTGCCGCAGGATTCGTGCAAAAAATGCTCGCCCTTGGAAACTGGGCTTTTTTGTTGTTTGACGTCAAAGAGTTCTGGCGGGTAA # Right flank : GGGGCGCCTTAGCTTGCCAGGGTGAGGAGGTCGTAGCGGCCCATGCCGAGTGCGGCGTGGGAGCCGACATGGGTTTCCGCGCCGATGCGCAGGAGCGCTGCGAGATCGGGCGTGGGCTGCGGCAGCATCAGCGTGCCGAGGACGCCGCCCATCGCTCTTTCACGCCTTTGGGCCTTTGACCCATTCCGCCAGCCGGGCGCGGTCTCCACCTGCCATTCGGCCCGGCGTCCGAGCGCGTCCGCTTCCGCCTTCAACGCCGCCGGGTCGATGGCAAGCGCATGCCCCTGCCAAAGCGCAAGCCCGCCGACGCGATTGGCGACGCCGGTCAAGAGGCTTTCCGGGCGCACATGCATCTGCGCGCCGGAGCGCAGCGCCACCGGCGTCACGAAGGAGAGGAGAAGGCCCGCGCCCGCCTCGGCGGCGGGCAGGCCGCTTGCGAGGCCGACCCGGCGATCTGTCACTTTCAGCGGGCGGCGTCTGTCGTGGGTGTCGAGGCCGTT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAGCGTGATGTCCGCATGGACGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //