Array 1 3520205-3522230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012159.1 Chondromyces crocatus strain Cm c5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================================= ================== 3520205 37 100.0 37 ..................................... TGAAAAACCGTTTCCGGAAGGGTGGAATCGGTGTCTC 3520279 37 100.0 37 ..................................... GGATCCCGAGCGACTGGAGGAAGACGTCGGTGTCCCA 3520353 37 100.0 39 ..................................... CCACAGGTTGTACGACGTGTACAAGGGACGGGTCGAGTG 3520429 37 100.0 38 ..................................... GAGTAGTCCTCCGCCGCATGGAACCCGTTGGCTTCACG 3520504 37 100.0 36 ..................................... AACTCTGCGTATACAGCCTCGCACACTCGCTGCATC 3520577 37 100.0 37 ..................................... ATCAGATAATGCTGCTGGCCAACGTGACCGCGATAGC 3520651 37 100.0 35 ..................................... CAGTCGATCGGATCGTTCGATGACGAGGGCGACGA 3520723 37 100.0 38 ..................................... GGCGGCAGGCGGATATTTCGCGCTCCTGGAGCCAGGCT 3520798 37 100.0 37 ..................................... GAGACGGAGCTTGCCCGGGCGACGGCGCGGCGTCTCA 3520872 37 100.0 40 ..................................... AGGGCATGGAGGCTGGCGTCGAGGCAGGGAGCGGCGGCGT 3520949 37 100.0 38 ..................................... CCGACGAGCACAGGGAGGTGGCGGGCACGCTATTGGGT 3521024 37 100.0 37 ..................................... CTGTTCGACCTGCGTCCACAGCGAGCCAGTCGTTGAC 3521098 37 100.0 38 ..................................... TGGCCCTCGCGTCCTGTGGAGCCGGCGCGGCCCGTACC 3521173 37 100.0 37 ..................................... AGCGCGACCGTCACCGCGCTGTCTTCTAGCAGCTCGG 3521247 37 100.0 39 ..................................... TACCTTATGCGCTTCGCACACTTTAATAGCTCCGGCTAG 3521323 37 100.0 38 ..................................... GCAGCCGTAGCCGCTCTCCAGGCGAGCGATTGCCAGGA 3521398 37 97.3 39 ....T................................ GGCAAGTAACCCTCGCGTCAGATCCGGCCCTCGCGACGA 3521474 37 100.0 37 ..................................... ACCAGATCAAGTCGTAGATCGCCCCACCCGGGGCGAG 3521548 37 100.0 39 ..................................... GCCGAGCTTCAGTCGGTCTCGAGCCGCACCACCCGACCA 3521624 37 100.0 37 ..................................... ACCACGAGCGGGGCCGTCTTCATCACCCTCCCCACGA 3521698 37 100.0 37 ..................................... TCGATGGCATCCACATCCATCGGAGGGGCATCATCCG 3521772 37 100.0 36 ..................................... GCCATCACGAAGCCTCTGCTTTCGCACCTGAGAAAG 3521845 37 94.6 237 ...................................CA TGAATTTCAGGCGTCCTTGTGTCCTGCAGAGCGGTGGCAAGGCCTGAAACTAGGCACTTTGGGAACGGCTGAGCTGCTCACAAAAATGCAATGTTGGGCGAAAGTGCGTCGATTGGTGATGTAATCGTATGAGGCTTCGCTTCATGCGTCCCGACGATTGATGATGTCATCGGGACGTCTGAAATTGGGGTTGAAACGCTCGAAGTGCTCCGTGGCGTCGGCGTCGTCGAGTGTAAA 3522119 37 100.0 38 ..................................... TTGGCAGCGTCCTCCGCCGGGCCAGACACCCCGTCTTC 3522194 37 94.6 0 ...................................CG | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================================================================================= ================== 25 37 99.5 46 CTTGCAGCCGACTCCCCGCAGACGAGGGGATTGAAAC # Left flank : GACCCGGCCTGCCCAGAAGCGAGTCCGAAACGCGCGTGATGCCCTGGCGTGCCCAGAAGACGCCGTCGAGTCACGGAAAGACGCGCCAAAGCACGACGTTACCTCCTTCTCTTCCGAGGGAACGGGCTCCTGGCACCTGCTTCTCGTGAGGCGCTCCGCGTGGGACCGACCTCAGCACTTTCTCTGAAGGAGGAGAGAGGCCGATGCGTTCATCGAGGCCAACGTCGCCCTCCTTCTAGAGAGAGGCTCCTTTCCGTTGGCCCCTCCCCGTCCAGCATCCTATCCCAACGAGACCCGAATGGGTCTTATGCTCTCACCGTAACTGAGACCCAGCCTGGTAGCGGTCAAGGCATCCCCAGGCTCTCAGCCCTGTACAGCCGGCCCGGCTTCTGACAAAATTCTGAGAACCTAAGGGGGTTTTGAGCAGGTTTGAGGTTCTCAGAAAAACAGGGCCCGCCAGCCGGCCATGACGGACGTGATTTCAAGTACTTAGCGGAGCA # Right flank : GTCGACTTAGGTGACAGCAGGCGCTACCGCTCGCTATCGCTGTCGCTTGAAATCGACGTTCAATCCCAGCCCAGTTCGCGAGCATGAGAGCAGAGGTCCGTCAGTTCGAGCCGGGAACCTGTACGCCTCAGGGCGGGGAGTTCGTGGGGGGCTTCGAGCCGACCCAGACCACCACGTTTTGCTGTGAGTCCGGCTTGTGAGGTTCGAGCTGCGCTCGCGGTGATGGCATCATCACCTGGATATCCTCACGAGGGATGCGCGTCTGTCCTGTGAAGCCTGGCCAGCGTGCGCAGTTTGGACTGAGCAACGCGGCCCTCAGCCAGCGACCGTTGCCCTGTGGCGCTCTCGGGGCGACGGAGGGGGGTCACGGGATCTTGATGGTGCCGAGGTCCCAGGTGTCGCCTGCCGTGAGCGTGTTGCAGCAGGGACGACGGCTCTTCTCGCTGGCGGTGATGATCCAGGAGGATGGGGCGAACGCCCGCTTCCCGTCGCGCTCGTAG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.81, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAGCCGACTCCCCGCAGACGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 2 4524009-4524861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012159.1 Chondromyces crocatus strain Cm c5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4524009 37 100.0 35 ..................................... ACGTGGGCCGCGCGAGCTGGAGACCCGCTCGAGGA 4524081 37 100.0 36 ..................................... TTGTTGAGGCACGCGCCCGGGATCCGCAGTCGCGAG 4524154 37 100.0 39 ..................................... AGCGGGATTGGCACACCAGGCGGGAAATCGACGATCGAG 4524230 37 100.0 38 ..................................... TGGTGACGCAGTGAGCGCGCTCGACCTCTTCGATCGGA 4524305 37 100.0 36 ..................................... GAATAGTAGGTGATGGTTCGTCGCTCATCCCGTTCC 4524378 37 100.0 38 ..................................... CGTGTCATGCGGTCCACGTCTTCGGCAGCCCCGAAGGC 4524453 37 100.0 37 ..................................... GAATGCCAACGAAACCCTGGCACAACCCCTAGATTAA 4524527 37 100.0 36 ..................................... TCAGAGCTTCCGAGCTGAGCACGAAGTACTCGTTTG 4524600 37 100.0 40 ..................................... AAAAGAGCACTATCGAATCTGACAACTGAGTGGTGTCAGC 4524677 37 100.0 37 ..................................... GAGGGCGTCGAGCACGATCAGGCTGACGATGTAGCCG 4524751 37 100.0 37 ..................................... AGGGAGACGGTAGGGAGACAGCCCACGGCCCCCGGAC 4524825 37 97.3 0 .................................G... | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 99.8 37 CCCGCAGTCCGCTCCCCGCTGATGAGGGGATTGAAAC # Left flank : AAGACGGGACCCCCATGCCGCCCTATCCACCCGGGCTGCCCGAGCGCGTGGGGTCCGTGGGTCCGCTGGCGTCCGTCCGTGGCAGCAGGCGGCGACCTTCCGAGCAAGGTGGGCGACGGAGGTGTCCACCGGCGGAGGTTCGCTCTCGTGGGCTGGACGCCAGACGCCCTGCTCCGCGTCGGCACCCTGGCCGTCGATGGAGACGGGACGTACGCTGTGAGGCCCGAAGACGCGAGCGTTCGGCGTGTCGCACCCCGGCACCTGGAGGACACCGCGCTGCCCGAAGGCGTGGTCCCCACGCTCGCTCCCTGGTGGAATCAGCGTACCGTGGACGGAGAAGGAGCCGAGGGGTCCGTGAGCACGATGTGGCTGTACGACCGGCTGGCCATCTGGCAAAATTCTGAGAACCGGAGGGGGTTTTGAGCAGGTTTGAGGTTCTCAGAAAAACGGCGCCCGCGACCCAGCACCGACTGACGTGATTTCAAGCACTTAGCGGAGCG # Right flank : CGAGCGCAGGCGATTGCCAGACGTTGCGTCGAATCGCTCTGCGGTGCGGGATGGCAGAAGAGGTAATTCCCTCTCGCTGGATGTAAGCGCGAGCGTCGCCTGGCTCGCACCCTTCTGCACGTACAGAGGGGATAGCCGAGGGCGCGTAGCGTGGTAGAGCGGCCGTACACGAGCTGCCTGCGGTGCATCCCGGATCATGAGCGTGATCACGATGGCAGGGGCGTGGTGTGTCATTGCCGCGCTGCGGCGCCGAGCGGAGCAATCAGGAGCCTGTGACAGCCATGTTGCCGCCATTTGCTGCCGAGAAGCGCGGTCGGTTTCGCCGCCTCTGGGATCGACTGCGCTCGCTGGAGGGGGCGCTGTTGCCGCCGTTTCTCCTGGTGGCGGCGTTGATGGCCTGCAAGACAGGGCGCATCGACATCTACACGTGTCCCGATCCTTGCGAGGAGTGCGAGGAGCCTTGTGCGTGTGCGGAGGGGACGTGTGTGCCCGTGCCTCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAGTCCGCTCCCCGCTGATGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 3 7099261-7095638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012159.1 Chondromyces crocatus strain Cm c5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 7099260 36 97.2 36 ....T............................... ACTTGGTGGACCTCGCCAACCTGCTCCGACGTCGGG 7099188 36 100.0 38 .................................... TGGATTGAGCTGCCCGAAGGGGGCGGGGCTCGTATCGA 7099114 36 100.0 34 .................................... CCGTGTTGGGTGGCGTTGGTGTCGCAAGGGGTGA 7099044 36 100.0 34 .................................... GACGCGCAGACGGATAAGGCACGCGCCGTGGTGG 7098974 36 100.0 34 .................................... CACTGGGTCCCCGGCGGCGCGCTCCCAGTTCTGG 7098904 36 100.0 36 .................................... TTATCGTTGCCGCACGCCGGACAGTCGCCGCCCTCC 7098832 36 100.0 36 .................................... AACACGACGCCACCCTCGGCTAGGTCCAGGGTCCAC 7098760 36 100.0 37 .................................... TCGAAGCCCCAGAAGATCCCGGCGATCGACCTCGTGC 7098687 36 100.0 37 .................................... ATTGTGGAGCTGTTGCTCATGCTCGTGCGGATAGGGG 7098614 36 100.0 34 .................................... AGATCCTTGATTGGAAATTCACGGTCGATCTGAA 7098544 36 100.0 37 .................................... GTTCCAGCGACTTCACCGGCCAAGCCGGCCGCTGCAT 7098471 36 100.0 37 .................................... AACAGACAGCAACGGCGAGCAGCTCGGCGCCGCGCGC 7098398 36 100.0 37 .................................... GCCAAGGGTCGCGCAAGCGCCGTCTCTTATCAGTTCA 7098325 36 100.0 34 .................................... GATGTTATGCGCGAGGCCACGCGATCCCGGGAGA 7098255 36 100.0 34 .................................... ATGCCACTGAGCTTCGGCGCCGCTTTCGCCGAAT 7098185 36 100.0 38 .................................... CAAAAGGCGCGCGAAGCAATCGGTCGCAACATTCGCCG 7098111 36 100.0 35 .................................... CTAGACTGTGGGCTGGGGTTCCAATGCCCTTCCTT 7098040 36 100.0 36 .................................... CCGATCCAGCAGGCGAGACACCAGGGCAACGTCACT 7097968 36 100.0 37 .................................... CGTCCCGTGGTGCCGCCGCTCGGCGCGCCCCGAATCC 7097895 36 100.0 37 .................................... TTCGCCGAGCCCGCTGTGACACCCACCCTGCGGACGA 7097822 36 100.0 35 .................................... AACTACGCGGCCAAAGGTCAGTGCGGGGCTGGTCT 7097751 36 100.0 39 .................................... ACCCTCTTCTGCGAGTCGGCGAGACGGCACTTCTCAGCG 7097676 36 97.2 36 ...........................A........ TGCCATTTCGACTGGAAAAGCGGGGGCAAGGGACCT 7097604 36 100.0 34 .................................... GGGAGTGCGGCGACGCCAGCGAGGAGCGCGTCTG 7097534 36 100.0 35 .................................... ACGCGCCAGCGTATCTGTACCTCCAAAAGACCTCC 7097463 36 97.2 37 .......................G............ CGCTCAAACCAGCGCGCCCTGCACCCGCTATCACGAC 7097390 36 100.0 34 .................................... GTGAATTTGCGCCCTTTCAAGAGCTTCGTCGGCA 7097320 36 100.0 34 .................................... GGGGAGTAGGGCACGTCCTTGACTACGCGGGAGA 7097250 36 100.0 36 .................................... GCGCTCAGAGACCGGGACGTGTTCCGCCAGAGCTAC 7097178 36 100.0 36 .................................... GTGACGGTGGTGTGGAGCGACTGGCCGGCCTCCGGG 7097106 36 100.0 34 .................................... ATCTTCTCCGAAGTTCATCGGGCACCTCCGTCCA 7097036 36 100.0 35 .................................... TTCTCCGTACTCGTTGAGTTAGTCGGTGACTGAGT 7096965 36 100.0 34 .................................... AGGAACAGCTTCGCTACCCGGTTGTCCTCTGCGG 7096895 36 100.0 34 .................................... CCAACAATGGCGGTCTCAGAACTACAGATGACAG 7096825 36 100.0 37 .................................... AAGACGGTAATGGTGAACCCCAGCACGGGCGGGAAGC 7096752 36 100.0 36 .................................... CCGGCCCGCTCGTGCAGTTGCCGCCTGGCATCAGTG 7096680 36 100.0 35 .................................... CCCCCTGCTGCGCGCCACGCTTCCTCCGGGATGGA 7096609 36 100.0 35 .................................... ACCAAGATCACCCACCCAACCCCAGCCACATCGCC 7096538 36 100.0 35 .................................... TTGTCGATCCTGCGCCAGGCACTCTGCGCATTCTC 7096467 36 100.0 35 .................................... TCGGAGGCGAGCCGCACGGGGCGAGGGGTGGTGCT 7096396 36 100.0 38 .................................... GGCGAATGCGTTCAGGATAAGGGCCGCCGCGAGAGGGA 7096322 36 100.0 34 .................................... TTGCGGTACCATCCGTGCTGGCGAAGGCTCTCCG 7096252 36 100.0 37 .................................... TCCAGCGACGGAGCGTGGCTCCTGCGCAGGCGAAGTC 7096179 36 100.0 37 .................................... AGATGTCGCATATGGTTGTCAACGGCGCGTCCGTCTT 7096106 36 100.0 36 .................................... AGTAACGGATTCCCGGGTCCCGAGGCCACTTACGAC 7096034 36 100.0 37 .................................... GTGACGCTGACAGTGTTGGCCACGTCGGCTGTCAACA 7095961 36 97.2 36 ....T............................... GTGCGAGCGCAGGTGCGGTGCGTGCCGCCCAGCCCG 7095889 36 97.2 35 ....T............................... GTTCCTGACCGACGGCGGCGGTTCTGCAAGTCCAG 7095818 36 94.4 38 ....T......................T........ ATCTCGGTCAGCATGTGATCTGGCGCGCGAACATGGCC 7095744 36 97.2 35 ....T............................... CCCGGGGCGCCTGGGGCGATCGTGGGGCTACCGGA 7095673 36 86.1 0 ....T....................A..CC.....T | ========== ====== ====== ====== ==================================== ======================================= ================== 51 36 99.3 36 GTGACGCTCGCTGTGATGCCGTAAGGCGTTGAGCAC # Left flank : GTCGGAGCCGAGTACGCTGCGGAAGGTTCACAAGACGCTGAGCGCCTGGGGAAAGCCAATGCAGTACTCGGCCTTCCGGGTGCGAGGGACGGCGCGCGAGCTGGCACGGTTGCGGTTCGAGCTGTCCGCGATGATCGATGGGAAGGATCGGTTGATGGTGATCCGGTTGTGCTCGGGCTGCGCCGCCCGGGTGAGCGTGCAAGGAGAGGCGCTGGCTCCTCTGGAAGCCGACCCGCCGCCGTTCCGGATGGTGTGAGGATCATGGATGTGGGCGCGTCCAGGGAGATGCGGTCGTTCTTTGACAAGTTGTGGCGTGATTTCAGGGGGTTGGGGGGTGAGTGGGGAGGGGGGAGGTGCGTGATCGGGGGAAAATCCGCGGGGTTGCTGGGGAGGGGGAGGGTGGGTAGAAGGGGAGGAGAGGGCGTTGGAGGGAGGGGAGAGGAGGAGCTTGAAAGAGGTGGTGGAAAGAGGTGTGATTTCAAGTGGTTATCTGTGGCGGG # Right flank : GTTGGGGTGAGCGAACCTCGTCTCGGCGATCGTCGCGTCCCGGTCGGGTTGTCTGGTCGCTGATGGCGTCGTTGCCGCAGGACGAGTTCCCAGCACGAATCACGGCATGAGGTTGTGCCGGGTCGTCCTCGTCGTCGCCGACGTCTGGCTTATGGATCAGGTCGAGACCCAGAGCGCGTGCGTTCCGGATCCGCAGCTCGGTTGGTTAGGCTCCGTCCTCGTGTGGGCAGCACCGGCGCTCAAGCTCCTGATCCGACCTCCGCGGCCATGCCTGCGCGGCGCGCTCGCCCCAGGGCAGCCTGCAGCGCCTCCTGGAAGGCTGGGAACCGCGCGGCACGCAGGCGCAGACCTTCGGCCCACCGCGTGGTCTCTCCGGCGCCCCACGGACCGTCGGAGAGCTCCACGCAGCAGGCGATCAGGCGCGCGGCGTGGTCGTAGGTCCGTCGTCGCTTTTCCCCGAGGACGCCTTCGGTCCGCTGGACCGCGGCGGCTTTCAGGGC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACGCTCGCTGTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 7114399-7109204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012159.1 Chondromyces crocatus strain Cm c5 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 7114398 36 100.0 36 .................................... ATCTCAAAGTTGAAGTGTCTCGCCCGCTCCGTGGAA 7114326 36 100.0 36 .................................... CGGCTGTACGCGCCGCACCCGTCGCACGCCACGACG 7114254 36 100.0 36 .................................... CAGGTGGTCGATCGTAGAGCCCAAAGCGGCTGCTCA 7114182 36 100.0 37 .................................... GCGAATGCGCCGATGGCGGGAGGCGGGGACTTCTACT 7114109 36 100.0 37 .................................... GTCGAAAGGGCGCGTCAGGGGGACGTCGCCGCCATCG 7114036 36 100.0 34 .................................... GGCAGCACGGCGTTCGCGGAGTCCGCCATTTCGG 7113966 36 100.0 35 .................................... AAGGGCATCCGCCGGATCTGCGCGTACCCCAGGTC 7113895 36 100.0 36 .................................... AACGCCTCCACGAACTCGGAGGTCTCGGCCTCCGAG 7113823 36 100.0 33 .................................... ATCTTCGCGACGCGGTGGAAACGTTGGCTCCAA 7113754 36 100.0 36 .................................... CGTGCTGTTCGCCATCTACCCGTTCTGGCGCTCGTA 7113682 36 100.0 36 .................................... AGCTGGGCGCAGAGGCCCCCCGAGCACGTCAGCCAG 7113610 36 100.0 34 .................................... TGGTTGCTGGGACTCTTTGTGTTGCTGATGGCGT 7113540 36 100.0 35 .................................... ACTTCGCGGCCTTGGCAATCCGCTTGCGAAGGGAC 7113469 36 100.0 39 .................................... AGTACGGCAACGTCATCGCCATCGGAGCGCACCGTGGCG 7113394 36 100.0 38 .................................... TGGCTGCACGAGGCGGCACACGTGCTGAACCGCCACGG 7113320 36 100.0 35 .................................... ACATGTTGATTGCGCCCACCGCGAGCGGAATTCTC 7113249 36 100.0 34 .................................... ATGACGAGCATGTCGAGCTTGTAGTCCTTGAATA 7113179 36 100.0 35 .................................... ACATGTTGACCGGACCGGTGTCGCGCGCGACCTGA 7113108 36 100.0 37 .................................... TGGGCGTTGCATGATGCCGAAGTTTCCCTCACGCCCT 7113035 36 100.0 34 .................................... GGCAGGCGCCGCACGGATTGGACGCAGCGCTCGC 7112965 36 100.0 36 .................................... ATGAAGGCCTTGTCCGAGCGCGGGACTTTCCCGTGG 7112893 36 100.0 37 .................................... TCCTACGCCGTCCCTGGCACTGGCGTCACCTTCGCCT 7112820 36 100.0 36 .................................... CCCATAATCACCTCAAAATGCGAAACGCCACCAGCG 7112748 36 100.0 38 .................................... ACTATGGCCGCGAATCCTGGCGGCGTGGGGATCCTGAT 7112674 36 100.0 37 .................................... CATCTCACTTCGTACGCAAACCTGCCGCGAGTGGCTG 7112601 36 100.0 35 .................................... AGGTTAAGCAGGGTCTTAACTACCAACACGCTCGT 7112530 36 100.0 38 .................................... AGTTACGCGACGATCAGCGACGTGCGCCTCAAGGGGGT 7112456 36 100.0 35 .................................... GCAGCAGCCATCGCCCCCGTCACGGGGCCGACCAC 7112385 36 100.0 34 .................................... TTCACTGCGCCCGCTGTGACACCCACCCTGCGGA 7112315 36 100.0 36 .................................... GAGCTAACCGCTCCTGCAATGAAGCCCATTCCTGGC 7112243 36 100.0 35 .................................... CCGAAGACGGTGTTGATCCCCCAGGCCATGACCTT 7112172 36 100.0 37 .................................... TACCAGCGGCGCACCACGATCGCCGGGCCCCCAAAGG 7112099 36 100.0 37 .................................... ACAGACTTGTGATCTACAAGCTGTCGCAGGTTGAGCA 7112026 36 100.0 36 .................................... ATGCGCTCACTGGTTGAGCTGTAGGCGGAGGAGTCG 7111954 36 100.0 38 .................................... CTCATCGGGTGCACGACCACGCTCAAGGAAGCGCGTGA 7111880 36 100.0 36 .................................... ACGAAAGCCGCGTCGCCGAGCGGATTGTGATGCTCC 7111808 36 100.0 38 .................................... GGAAGAACTAGCTGTGAAGCTGGAGGGGCTCACGGGCG 7111734 36 100.0 38 .................................... CGTGCGGGTGCCTGGACCCATCCCCCGTTGTCGCAACG 7111660 36 100.0 36 .................................... CGGTGGTTGTCCCGATCCCTGGGGCTCACTGTCGAG 7111588 36 100.0 35 .................................... TTCGGAGACGACCGCGGATCATCGCCGGTCGCGAC 7111517 36 100.0 35 .................................... ACAGGGATGCTCGACAAGAGCACGGTCACTGGCAA 7111446 36 100.0 39 .................................... CTCTGGAGGAACACGTCGGTGTCCCACTCGTCCATGAGC 7111371 36 100.0 36 .................................... GGCTCCCGAAGCACCCCATGGCCTTCCCGCTGGAGC 7111299 36 100.0 34 .................................... AAGAGCGTTGGTGAACTGGCGGAGGCGGTGCAGG 7111229 36 100.0 37 .................................... GGGGAAAAGGTGTGGTCTGGCGCAGTGCAGGACAATA 7111156 36 100.0 38 .................................... TCTGCACGAGGTGGTCGGATTCGTCCGATACCATCGAT 7111082 36 100.0 38 .................................... ACGAAGCTGTACTTTGCAATCGCTGCCGCGACCCTCTC 7111008 36 100.0 35 .................................... ACGTAATCGCTGGGCACAATTGCCCCGACGCGGTG 7110937 36 100.0 35 .................................... ACGTAATCGCTGGGCACAATTGCCCCGACGCGGTG 7110866 36 100.0 35 .................................... CCTGTATTCAAGGTTGCCGGCGGGGATGACGCCAA 7110795 36 100.0 37 .................................... GCTCTGGAAGCGTCTGGACGGGTGTCAGGCTCCGGCA 7110722 36 100.0 35 .................................... GGTGGCGAGCTGTTCGAGGTGCTCTGCGACCTGGC 7110651 36 100.0 36 .................................... ATTTACGTTCTACTTGCGGACGAGATGACCATTGAC 7110579 36 100.0 35 .................................... ATCACGATCCACGACACCGGCCGCGTTCCCTTCCC 7110508 36 100.0 36 .................................... TTCTTCTCCCCTGGCCAGGAGCCCATGCCGCTTGAC 7110436 36 100.0 35 .................................... TCCAGTGCCCGGAGCGGGCCGACCAGAGCCTCCCT 7110365 36 100.0 35 .................................... GACGCCACCGCCGCCTACGCCACCCTCGAGACGCT 7110294 36 100.0 35 .................................... GTCCAGGCGCGCGACGGTGGCGTGAGCGTCGCGAA 7110223 36 100.0 35 .................................... ATCGTTAACATGGCGCAATGGTGGAAGAGCCAAAG 7110152 36 100.0 35 .................................... CCGCCGGGACAGGTCGCCAAGTGGGCTTCCGTGGG 7110081 36 100.0 36 .................................... TCGGGAAGCTCAGGCAGCGTCACGGTCTGCCTCCTC 7110009 36 100.0 38 .................................... TGCGTGGGATTGAGTCGGTGGTCTCCTTTTCAGCGGCG 7109935 36 100.0 33 .................................... TGTTTGCTGCTGTTGGGGGCATGCTCGATGGAG 7109866 36 100.0 34 .................................... ACCGGGCCGACGAACGGCCGCGCTGGGATCCGGA 7109796 36 100.0 36 .................................... GCGGCGAAGCGGTCGAGGCCCGCAGCCACCGAGAAG 7109724 36 100.0 36 .................................... TAGCGCTGACGCTTCTCGCGCAGGCGCTTCTCGCCA 7109652 36 97.2 19 ...........A........................ CCAGTCGGTCCGCATCGGG Deletion [7109598] 7109597 36 83.3 35 CCCGC..C............................ ATGCAGCGGCTGCACGAGGCCGATCCTGCTGGTCA GA,AA,T [7109580,7109584,7109587] 7109521 36 100.0 35 .................................... TGCTCGGACAGCCACGGCGCTCTCATCGCGGACCC 7109450 36 94.4 25 ...................T...............T CACCGCGATCTGGAGCTTGAGCCAG AATTAAG [7109422] Deletion [7109390] 7109382 35 91.7 35 .C...-...C.......................... TGACGGTGAGCGACTGGAGGTGCGGTCGCAAGCGG 7109312 36 94.4 36 .....................C....T......... TCTGACAACGAGAACTGCGGCAGGTGTGGTCCACGG 7109240 36 91.7 0 ...........A..........G.....C....... | A [7109233] ========== ====== ====== ====== ==================================== ======================================= ================== 73 36 99.4 36 GTGATGCTCGCGGTGATGCCGTAAGGCGTTGAGCAC # Left flank : GTTCCGGAGCCGAGCACGCTGCGGAAGGTTCACAAGTCGCTGACCACCCGGGGGAAGCCAATGCAGCCTCAGCCTTCCGTAGGCGAGGGACGGCGCGCGAGCTGGCACGGTCGCAGTTCGCGCCGTCCGCGAGGATCGATGGGAAGGATCGGTCGATGGTGACCCGGCTGCGCTCAGGCGGTGCACCTTCGGCGAGCTTGCAAGGAGAAGCGCTGGCTTCGCGCGAAGCCGATCCGCCGCCGGGTCAGATGGTGTGACGATCATGGACCTGGGCGTGTCCAGAGGCGACGCGGTCGTTCTTTGACAAGTTGTCGTGTGATTTCAGAGGGTTGGCCCGTGGGCAAGCAGGGGTGAGGTGCGTGATCGGGGAAAAGCCGCCGGGTTGCTGGGGAGGGGAAGGGGGGGTAGAAGGGAAGAAGATGGGTCACGGCGATGGGAGAGGAGGACCTTGAAAACGGCGGAGAATATGCGAGTGATTTCATGTGGTTACGAGTGGCGGG # Right flank : GCTCCACGGTGCGGATTGTCGGGGTGGCGTCGGAGGTTGTGGCCCCTCGTGCGTGGGAACATCTCTCGTCAATCAGGAAGGGAGCTGTCGTCGGCCTGCCTGGAGGTCGGGTTCTTTCTGGCGGGAGCCCGACGGATCGCGGTTCGGCGGTCGACAGTCGGCCACGGGGAGGCCGATTGTGGCCTGGCCGCGGGCCAGAGGTGACCCGTCCCCAGGTCGGCCTTGGTCTGAGCGGCTTTGCCGACATCCACCGTTGCCAGGTGCCTCGCCAGGCCGCGAAGACGCCCGACCCGCCGCGCACCTGAAGGGCGAACGATCACACAGGCGCGCCGCGAGAGGGCTGCAAATGCCTCGCATGAGGCCGGCGGCGTGGGGCGGAAGCTCGCGCTGGGGGCTGGGCGCGGATCCAGAGGACGAGGCCCCGCTGAAGGGCCGCAGAGGTGGCTGGCGGCAGAGGAGACGCCAGGCATCACCGCAAGAGGCGGCTGGCAAGGCAGTTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATGCTCGCGGTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 5 7819768-7820446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012159.1 Chondromyces crocatus strain Cm c5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 7819768 37 100.0 34 ..................................... CAAGTGACGCCGTAGTCGTCGTCGTGTCGCGTCA 7819839 37 100.0 34 ..................................... GGCGCCGGCGCTCTGGCGTCCGCGAGAGGTAGGT 7819910 37 100.0 35 ..................................... AACACCGTCTGGTCGACGATGGCGTCGTACAAGGG 7819982 37 100.0 34 ..................................... CACTCACCCGTGTGGATCGTGGTCACGATGGCGG 7820053 37 100.0 35 ..................................... ATCAATTGTCAGCGCACGGGACGAGAGGTGACCGT 7820125 37 100.0 35 ..................................... ATATCCTCGTACAGCGGCGCATTGGTGAGCGGGAC 7820197 37 100.0 33 ..................................... GATGACAAGCCCAGCGACCCCTGGTTTATCCGT 7820267 37 100.0 35 ..................................... GTTTACGACGAGCTAGACCCAGGGGGACACGATGG 7820339 37 100.0 34 ..................................... GTCGACATGTTGGTGTGCAACTGCGACGCCACCC 7820410 37 75.7 0 ........................A...CAGC.CCTT | ========== ====== ====== ====== ===================================== =================================== ================== 10 37 97.6 34 GTCGCCCTCCTCGCCTGAGGGGGGCGTGGGTTGAAAC # Left flank : AGGTCCCCTCCACGGCGGCCGTCGAGAAGGCCGACGCGCGAGGCGGGGACGTTGGCGCCCGACGAAGACGTGGCCCACCGTCCCGCCAGGGCGCTACCATGGCCTCGGTGGGGCATCCGGCAGGCAGTCCATCGGGCGGCGTCCCCGACGCCCCACGGCAAGCGACCTCCCCCCTCACCCCCGGAAAACCCGCCGCAGGTCCCCGCGACCGGGCCGCACGCCCAGCCTCATCCCCAGCCCGAACTCGCCCTCCCCATGCCCAGCGCGCCACCTCCTCGAACCCAGCCCCCGAGGAGCCCCCACCCCTCCCCTCGACACCGCGCGCGAACCTCGCCCGACGCGAAAACCCTGGGAGGTTCGCGCTACCCCCGCTCTTTGACATTCCGCAGGGTTACGGGCGCGCACTGGGCCAGGCACGGCGAAGTCGGGTATGCTGGGACGAGGTTCGCGAAAACAGCGCGAATTTCCCTGGATATTCCGCCACTTGGGGATGCCAGGGG # Right flank : TGCCTGGCTGGAAACCATGCAGATCGTTCTTTCGTGAGAGAACGCAGCTCGGACGTCACTCACCGTGCGCGCAACAGAACGTGGTGGTCTGGGTCGGCTCGAAGCCGCCCAGGAATTCGCCGCCCTGAGGCGTGCATGTCCCCGGGTCGAGGCGCCTGAACTCTGCGTTCATGCTTGCGAACTGGAGTGGGATTGAGGTGAGGAGACAGCCTCCGTGATTGTAGCCCACGGTCGTCGCGAGGCTGCGTAGGTTGCATTCGCTTTGCTCATTCAGCCGGAAAAAGACGTGGCAACCGCTCGTCTCTGGGGGCGAACAGCGACATGGACTGCACGACGAACGATCCTCGGCCATGCCGTGGAAGCGATGCATTTCTGGATGGTCGGGTGGGCAACTCGTGACCTCCGCGGCGCTGAACATGCAGCGCTCGAATCCGGGCGGCGGAAGTGGGTTGCAGTCTTCTGCGTGGTCGCTGCATTCCTCGCGCTTCTCGAAGGTCGAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCTCGCCTGAGGGGGGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 8802990-8803833 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012159.1 Chondromyces crocatus strain Cm c5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8802990 37 100.0 38 ..................................... AGGCTTTGGAGCGCCTGAAGGCGCCCGGCGCTACCCCG 8803065 37 100.0 38 ..................................... CGCACCTCGTCCCTGCGCAGGAGTGGCGCCTCGTCCTC 8803140 37 100.0 40 ..................................... CACAATGCGCAACGTACCCTCACTGTCGATCTCGATCTGA 8803217 37 100.0 39 ..................................... GCTACTGGTGTCACCACCCTCCCGTGAAGGTCAGCCACT 8803293 37 100.0 39 ..................................... TCGCATCGACCGCGTGGAGGGCTTTCGTCGCAGCCTTGA 8803369 37 100.0 22 ..................................... CTGGAGGTGCCGCTCCTGGAGG Deletion [8803428] 8803428 37 100.0 37 ..................................... GTGAACTGGGGTAGCTGGCCGTTCCAGCGACGCTGCG 8803502 37 100.0 37 ..................................... ACTTGACGGATGCGATCCCTGATGGGGTCTTCGGCGA 8803576 37 100.0 35 ..................................... TGCTCAGGCATCTGCGACTGGGAGGTGCTTTCCGC 8803648 37 100.0 37 ..................................... TTGTTGTCGAAGTACCCCTGGACCGCAGCCGCCGAGT 8803722 37 100.0 38 ..................................... CAAGCGGATACGTGCCGGTGCCGGTTGAGCTGTATTGC 8803797 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 12 37 100.0 36 CCCGCAGTCCGCTCCCCGCTGATGAGGGGATTGAAAC # Left flank : GCTGGTGTCCATCGGGGAACCCCGAGCGTGTGGCGAGACGGCAGGATGAGGGTGGGCCTTCGCCGTTCGTCCGTGGGGTTGGAGCGATGGCGTTCCGCTCACGATGGATGAGGAAGGTCAAGGCGGGGAGGTTCGCTCGGGCGCGGAGGTGGTCGGGCGATGCGTGATGAGGAGGGAGAAGGGAGAGGGAGGTGAGGGCGCGACCAGGTAGCGGCGGGCGGAGAGATGCTCGGGCGGAGATGACGAGCGCAGGCGTCGTGTGCCCGGCGGGGGTGGGAGCGTCCAGTGTCCCCGCAGTAGCGTTTCCACTCTCGACACACGGGATTGCCCGGACGAGGGTGGATGAGGAGGCCGGGAGGGCGATGGCGCTGTACGACCGGCGCGGCGTCAGGCAAAATTCTGAGAACCGAAGGGGGTTTTGAGCAGGTTTGAGGTTCTCAGAAAAACGATGCCTCCAAGCCAGCACCGACCAACGTGATTTCAAGCACTTAGCGGAGCGC # Right flank : CCCGAGGGGAAGCGAATCGAAGCCGAGCCCCATCGGTACCCCTTCCTGGCTCCAGACGGCATGGCCAAGCTCGCTGCGCCTCGACCGCAGCCACGCTGCTGAGCCGCGCATCGTCCAGAAATGCGCTAGGATCGCCGGGATGGGAGACCCCGCGGAGCAGCGGCCCGCGCCGGCCACGTACGCCGATCTCGAGGCGGTACCAGCGCACCTGGTTGCTGAGATCCTGGCTGGCGTGCTCCACACCTTCCCTCGGCCCGGACCTCGGCACGCCAGCGTCGCATCGCGTCTCGGCATCGATCTAGGTGGCCCATTCGACCGGGGGCGCGGAGGACCAGGCGGCTGGTGGATCCTCTTTGAGCCCGAGCTGCATCTCGGCGGTGACGTGCTCGTCCCCGATCTTGCCGGCTGGCGCGTGGAACGCATGCCGGACCTCCCGGATGCGGCCTTCTTCGTCTTGCCGCCGGACTGGATCTGCGAGGTCCTGTCCCCGTCGACCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAGTCCGCTCCCCGCTGATGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : NA //