Array 1 96381-96230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000006.1 Saccharomonospora sp. NB11 NODE_6_length_315250_cov_60.5485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96380 29 100.0 32 ............................. CCTGACATCCAGGTTGTCAGGGTTTCCTGACA 96319 29 96.6 32 ............................G GCAGGCGCTGGCGAATCACGCCCTCTCCTACG 96258 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCGGCCCCGCACGCGCGGGGATGGACCC # Left flank : CGAACGCGGCGATCACGTCGCCGCCGCTGCCCTCACCGACCGCATCGAACCCGACCAGCTCCCCAATCCCACGCGGCGCGTCGCGTACCACCTCGCGCGGGCTCGCGCCTGCACACGCATCCGACACCGCCGCTCGGACGCCGTCGACGCCCTTCGAGCAGCCGAGCGCATCGCACCCGCGCGAGTCCACGGCTCGCGGGTCGCCCGGGGCCTGGTGTGCGAGTTGATCGAGCGTTCACGTGCCGACGCCACCGGGACCGAGCTGCGCGGCCTCGCCTCCCGCGCCGGACTGGACCTTTAGCCCGGGTGGTCACGCGGGGACCTTGCCACGGTGGCAACGATTTCCCGCCCGCGTGCCCGAACCTTCCGGCATGACCACGGAACCAGGTCCATACCTTCTCGTTCGGCACGATCCCTCGCGCCTGCCCTCGCCGGTTTCCGCGGGCTCTAGACTGAATGAAAACCGCCCATTGACCGAGCAAAGTCGCAGGTCAGGAAGT # Right flank : ACTGCGCTGTTGCCTCACCGACCTCCGCCACCCCGCCCCCACGTCGCCATCCGTCACACCTCCACCTCCTCGGGCCACTGCGGCCACCGGGCCGGTGGACGTCGCTCGCCGGGGCTTCCGCGACGCTCGGTGGCCGTGACCTCGCTGTTCTCACCCGGGCGGACGGTCGACAGTCCGTTCGGAGGGTCCTGCGCCGGGGAGGCAACCTCGCGGGTCGGTACCCGCGTCTTGTGGTGTGGACCCGGAAGAAGGGGGTGGCGACGATGAAACGCATCAACACGGCACACGCGCTGCTGGCCACGACGGGCATCGTGCTCGCTTTGGCCGGATGCAGTTCCGGCAGCGACGAGGCGGGTGGTCCCTCACCGGACGCGCCGGCCACGTCGGAGACCACGTCGGCCGCCCCGCCGACCTCGGAGCAGACCGACGCTCCCGCCGACGCGTCGAGTGCGGCCGACAGCGCCCACGCGGCGCCGAAGCCTCAGGCACAGCAGCCGCCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87682-87894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000015.1 Saccharomonospora sp. NB11 NODE_15_length_126394_cov_66.3364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 87682 30 100.0 32 .............................. CACGCCGCAGCTCACGGGCCTTCGGGTCGATG 87744 30 100.0 31 .............................. TGGAGGGGCACTACGTCGAGCGGGTCCCCGG 87805 30 96.7 31 ............................C. ACGTCCAGTGGACGTTCGTCGAGGGCAACTC 87866 29 90.0 0 .......................-...TT. | ========== ====== ====== ====== ============================== ================================ ================== 4 30 96.7 32 GTCGGCCCCGCACGCGCGGGGATGGACCGC # Left flank : GCGGGCGATGACATCACTCCGACCGAGTCGAATGGCATCGACCGTGGTGATCACTGGTGTCCCTCGACGCCTTGCAGGCCAGTCCCGGACGGGAACGACCTCGTGTCGGTTGGTCGAGACTCTCCGGTCCCACGCTCGCCTGATCCGACGTCACGTCCGCTCAAGTGTTCGCACCTGGGCCGTACACCAGTGCTGCAGCACTTGGCGGAGCTCGTCGGCATGGAATAGCTATCGGTCGAAGCTAAGCCTCCGGTCTCTGGATTTGGGTCGACGGCGAACACGGGTCTCTCGCAAGCGGTGCTGCCGGATCGCCTTGCCGTTCACGCGGTGGTCCGGTCGCCGATGCCCACACCACACCGGCCGGTTCACGTAGGCGCCCCGACTCGCGAAGCTGCTGCGGGTGTCGTCCCTGACCGACCGGGCACCCGACAGCCCATCGACGCTGTGTCAGACTGAATGAAAATCGCTCGTTGGCCGAGTAAACGCGCAGGTCAACAAGT # Right flank : CCGATCAACGGCTCGCCATCTCTGGTGGCATGACGAGGTCACGGACAGCCGATGAGCACTGCGCCGGTGCGCGAACCGTCTTCTCAAGCGGTTGATCGCGCCCTGCGGTCGAGTACTCCTGCGGTCATGACGTCTGCAGAGCCAACCAACAGGCGAGATGACTCGGGAGCGGAACGCCGGCTGGGCCGGAGATCTGCCGAGCGATACCGTCCGCTCCTTCCTTCTCTTCCATTGCCCTTGCGACGAGCTGTCGCTCTGCGACGGTCGGCCTTCGGTCACCACAGCAGCCGCGCGGTCTCGGGAAATGTCGAGCGTTCGCCGGACACCACTGCCCCGGCGCACTGAATAACGTTCCGATGTGACAGCCGCCGGACCGCGTCGACCGACACACCGGCGGACTTCCACGAGAACAGGGGGAGAAATGAGGAACGACACGAAGCGGTGGACGATGCTGGGAGGCGTTCTCAGCGCGGTGCTCGGCATGTCGTTGTTCGCCGCAC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 89628-89847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000015.1 Saccharomonospora sp. NB11 NODE_15_length_126394_cov_66.3364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 89628 29 100.0 32 ............................. TTGATGACCACGTGGGTCTTGTTCTTCGGGAT 89689 29 96.6 40 ............................T GTCGCAATAGGTGATGTCAACGGATTCCGAAACACTCTCA 89758 29 96.6 32 ............................C GGTTGGCGCAAGTCCAGCTTCTCCGGCGAGGA 89819 29 79.3 0 ...........A.G.........TTG.G. | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 93.1 35 GTCGGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGCCACGATGGAGGCCACCGTGTCGAGGTCGGACTGCGTGGGGTGCTTCAGCCACGGGCCGAGCAGTGTGACGTGGGCGTGCACGAACGCGGGATCGGCCGACAGGAACGACAGGTCGTAGTGGGCGGTGCGGCGACGGACGTAGTCGTCGAGAGCGGGCACCGGAACAACGAGAACCGAATGCCCGGTGGACCACGCGGACATCTCGATCCCTTCATGTCGTCGACCCCGGCGGGCGAAGCGTAGAGCACGGTGATGTGGCAGCGGGTGCGAGAGGCGTGTCGATGTGACTGAGACAGGACATGGATAGGGCGCGTTCGCCGGTGTCCCACTCGAGGTGCGGCTGGTCGAGCGCGGCGAGCCCCGCTTGCACGTCTGTTGCGCGAGGCCGGTCGGGGCAGAGACGCCTTCCCGGAGAACAGGTGCGCACCCCTCGTCGACGCTGTGTCAGACTGAATGAAAATCGCTCGTTGGCCGAGTAAACACGCAGGTCAACAAGT # Right flank : GCATCCGCCGTGCGTCGTCAGCGGCCGCGCCAGCGTGGTGGGCGTTTCTCCGCGAACGCTCGCGCGCCCTCGCGGGCGTCGTCGGAGTCGAACACGGGCGCGACCACGGCCGCTTGACGGCGGAAGGCTTCGTCGCTGGTCCAGTCCGCGGACCGGTGGACGATCTCCTTGGTGGCCCGTCAGGCGAGTGGTGCGCCGGTGGCGATTCGTTCGGCGAGGGCGAGGGCGGCCTGGGCCAGTGACAACGCCAGGGCGCCACAGGGATGCGTTCGGCGTCGAGCACTTCCAGGAACTAGCGGAGTTCGTTGCCTTCCTCGCCGACGAGGTGGTCGGGGATTCAGTAGTCGCGGAACACCAGCTCGCGGGTGTCGAGGGCGTGCCAGCCCGGTTCGTCACGACGGGGGTTGGGCGTGCGCGGGCAGCGTCCGCATCGCGCTCGTCAGCCCGTCGCCTGCCCGACCCTGCATCCGCCGCGTCCGGCTCACTCCGCGAACACCGTG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5363-5029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000008.1 Saccharomonospora sp. NB11 NODE_8_length_273423_cov_58.3722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5362 29 96.6 32 ............................T CGCTCCTGCCCGGCACGGCGTCCCGGCGCGGA 5301 29 100.0 32 ............................. ACGCTCATCTGATCGTCACGCCAGTTCACACG 5240 29 100.0 32 ............................. ACGCTCATCTGATCGTCACGCCAGTTCACACG 5179 29 96.6 32 ............................G CGCGAAGCGCCGCCGCGACCCATCCCTGGCCC 5118 29 96.6 32 ...............A............. TCCAGCGGATGTCGGCGCGGACTTCGCCGTTG 5057 29 93.1 0 .C........G.................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 GTCGGCCCCGCGCACGCGGGGATAGTCCC # Left flank : GCCGCCACGTTCGCCACCACCTTTCGGCACAGCATCGTGTGCGCGGTGGAACGTGGCGTTGTTCGGTCCTGGATTCGGCAGCAACGTAGCGCGTCGAAGTCCCGCTCCGGACGGAGCGACCTCCACAGCCTTTGCGGTCGGTGGCCTGCTGCCCCCTCAGCATCTCGGCTTGCACAACTCGGGCTCTCAGTTGGCGGTTCAGACGCCGGATGAGGTTGAGACGTTGCCTCAGGCAAGTCGATCATTTCGGTACCACGCGCGCTGAGGTTCGCGATACCGTCGGCTGCATGCAAGTCGGGGGAAGAGCTCCGGGAATGTGTCAGCCCCGCATGCTAACGATCTCGTTGCACCAAGCCCTTGCCCAGACGGTCGATCCCGCCCACATGCCCCGCCATCCAACGACTACCTCCGCTGGAGAACCGACGACCAGCCCCTACCCGCCCTGTGGCAGACTGAATGAAAATCGTTCCTTGGCCGAGTAAACGCCCAGGTCAACAAGT # Right flank : TCCCCGGCAGCAACCCGCGGCCAAGGGATCGTGAGACCGCGAAATCACCCGTCAGGAGTAGTAACCGTTGGTAGGAGCGGTGCCCGTTGACTGCCGTGAGGCTCTGGAGGCAGCGAACGGCAAGGGTTCATGGACGAAACCATGGACAGCCAGCCAGCCTCATCTATCGAGCCGCTCCGGGACCGGGGAGCGCAAGCTTGGCAAACGCTCGCACTGCGGCCGGCCACCTCAAGCCGATGGAGGCGGGACGTTGCTGGTGGAGAGCCCGCACCGTCAACCACTCAAGAAATGTCTACCCTTCACATTTCTGACCCCTATTTGCATACTACTTGAAATGGGGGCAACGGGGGCGATCGAGCTGAATTAAGGAATCAACGACAAGGATGTCTCGCATCCCTGATCGGAATATCAAACCATACTCGCCAGCCTTCGCCATTGCCGTGCTGACCCTAGCTCGTTCACTAGAACAGATGCGCGTTCGTACTGTCGACGAGCATCTA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9125-8731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000008.1 Saccharomonospora sp. NB11 NODE_8_length_273423_cov_58.3722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9124 29 96.6 32 ............................C TGGCCATCTACCGGGATGAGGAGTTCGTGTGG 9063 29 100.0 32 ............................. CTCGGCCGTGGCTGATGTGCCTGAGCCTCGGC 9002 29 96.6 32 ............................C AGAAACCCGGCCGTGGCCATCCCCACGACCGA 8941 29 100.0 32 ............................. TCGCGTTCGGGCTGGTCCACACCAGCCGGGCA 8880 29 96.6 32 ............................C ACCTACATCACCACGCGCTTCTGCTGGATCAC 8819 29 100.0 32 ............................. GCCCGGGCCGACGACGTCGGTGTCATGAAGGC 8758 28 89.7 0 ...............C........-...T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : GGCTGAGCTTCGCGAAGTCGGCCGGGCATTGCGGACTCTCGCCGAAGACATGATCGTTCGCGCCGACGAACTCGACACCACGGCGGTGGTCGGTGCTCAGTGATGCCCCGACCGCTCCGAAGCCGCCGTGGTCGATGACCGTCCGACGCGGCCTCTCGGTGACCTGCTGCATCCGCCGATATCTCGGCCTGCACAACTCGGGCTCTCAGTTGGCGGTTCAGACGCCGGATGAGGTTGAGACGTTGCCTCAGGACATCGATCATTTCGGTACCACGCGCGCTGACGTTCGCGATACCGTCGGCTGCATGCAAGTCGGGGCTACGGGAACGTGTCAGCCCCGCGTGCTCACTGCACCGAGCCCTTGCCCAGGCGATCGACCTCCGCCCATGCCCCGCCAACCAACGACTACCTCCGCCGGAGAACGGATGAGCCCCTACCCGTCCCATGACAGACTGAATGAAAATCGTTCCTTGGCCGAGTAAACGCCCAGGTCAACAAGT # Right flank : GACGCAGTGCGCTTCGATCCCTGATCGCCACGGCCACTCTGGGACGTGCTCGTTCCACTGGAGCACTGAGAGCACACTCCACACCCACTCCGGAAGCGAAACGGAAGGCGCTGCTCAACATCATCGGAAACGGGCTGTACCTGCTCGTGATCGCCGCTGCCGTCGTGTTCCTGGTCGTCGTCGCGATCAACAGTGATGGCAGTTACTCGCTCGGTCCGCTGCTCGGGCGTGTCGCGCTCGTGCTCGCCGTGATTTACCTGCTCATGCGGTTCGTCAAGTGGGCGACACGAAGATGGCAACCGCGCTCGCCGAAGCGGCCCCGGACACCACACGGTGCCGGGGCCGCTTGCTGTTCGGGGTGACGTACCGATCGGCTCCTGGCTCCGCTGTGCGGCGGACCCTTCGCGTGATGCGCCCCGCATGAGGAACCCTGGGGCGACGCGGAGGAGTCCCGGCCACGCGACGAAGGGGGCACCCCCATGCAGGAGATCGGCGCACGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 12446-11682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000008.1 Saccharomonospora sp. NB11 NODE_8_length_273423_cov_58.3722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12445 29 96.6 32 ............................G GTGATGTGACCCCAGCAGCGGGCGAGCTCACG 12384 29 100.0 32 ............................. TTCGTGATCATTCTCCCGCGGTGGATCAGGGG 12323 29 100.0 32 ............................. GCCCCGCCCCGGTGGGCGGGTGCCCGTCGAGA 12262 29 96.6 32 ............................T CCGGTACCCGCCGGGGCGGCGTGGCACCCGCG 12201 29 100.0 32 ............................. TCGAGGGCCGCCTCCGTCACCGACAGCGGAGC 12140 29 96.6 32 ............................G GTCGCGGGCGAGTTGGCGCGAGTCCTCGGCGG 12079 29 96.6 32 ............................A GTTGCCGGGTCATCTCCGACGGGTCTCCATCC 12018 29 96.6 32 ............................G CGATTCGTTTTCGCCGTCCGCGTCGACGCCGA 11957 29 100.0 32 ............................. GTCTTGGGATCGTGCTTCGCTGCGTCGTGGTG 11896 29 96.6 32 ............................T GTGACGTCGTAGAACCCGACGCCGCCACGGCC 11835 29 96.6 32 ............................A CTGTCGAGCTTGTTCCGGATCGTTCGTCAGCA GC [11826] 11772 29 96.6 33 ............................A GCGACAGGCCTGCTCACGGTCGCGCCGCTGGCC 11710 29 93.1 0 .........................T..A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 ATCGGCCCCGCGCACGCGGGGATGGACCC # Left flank : TCGGCAGCGATACCAGGTCGGCCCCGCGAAGGATGCCGAGCTGCGCGTCGGCCGCGTGCATGGAGGACACCGCTGGCGGATTCGGGTGAAACCGAGGCCGAGGTAGAGCAGACCACTCAACTACACCTACGGGACGCGTGGCAGTGGCCCGACCTCCCGCGCGACGACGTGATCGCGCAAGCACAAGCGGCATTGCACCAGAACGACGAGCCGACACTGCCGATCCTGCGGTCCGTACTCACCGAACTCCAACGACTGACCACAGACACCCGAGCCAGCTAGGGAAACCCACAAACGCCCGATAGCCCTTCTCACCGCCGCAAGAGAACACGAACTGGCCCCCTGCGACGCCACACCGCGGACATCGGGCACCGTAGAGAGCAACAAGCCCCGACCATGGGGGTTGACCTCTCGGAGAACACGTGCACAACCCACGCCCACGCTGTGTCAGACTGAATGAAAACCGTTCCTTGGCCGAGTAAACCCGCAGGTCAACAAGT # Right flank : GCGCGTCGTACACGCTGACTCCCTTGGAGGAATCGGCCCCGCGGCCCCGAAATACTCGGTGCTCGCGGCTTCGAGGTCGGCGGCTACCGCGTCAGACCCACACACGAGGGCTGTTTACGAACTACCGACTCGTCACAAACGCTCTCGGCGAACCCAACGCAGACCGTTGCTCCCCTGACTGTGCGCCGGTGGACTAGACCCACCGCCAAGGGTCGCTCGCGCAATCAGCTGCGTGCTTCCCAACGCAATAACGCTTGTCATGGCGGCTGGTTGCTCGGGCGTATCGCACTCGCGCTCGCCGTCTACTTACGCAGCCCGTCAAACGGGCGGCACGAGACCAGCGATTGTGCTCGTCGCCGCAGCCCCGGAGATGGGGGGCCGCTTTACGTGCCCAATCAAGTACCGACCGCTAACCTGACGAGTGATTCTCTTCGCAGAGTGCCCGCAGCCTGGCCAGGGGTTTCGCGAAGAGGACACGACTACGCGAACGAGGTGATCCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 13230-12956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000008.1 Saccharomonospora sp. NB11 NODE_8_length_273423_cov_58.3722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13229 29 100.0 32 ............................. GTCGGCGCCTCCAGCGTCTCCGAGAGCGGGTC 13168 29 100.0 32 ............................. CGCCCTTGATCACCACGTCCTGCTCCGCGTAC 13107 29 100.0 32 ............................. CGCAGTGGTGCGGCCCCGATGGCCAGTGGCTC 13046 29 96.6 33 ............................A CCAGGAGAGGTTCCGGTCGAGGTGTGGCGGGCA 12984 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.6 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : AGTTCGAGCACAAGCTCAATGACGGGGAATTGCAGCAGATCAACGGTTGCCGTGCGACGGGCCGTTATGTCGACGGGCTACGGGTGCGCGACCGTGAGGATGCCGCCGGCCGCCGCTGGGACCGCGCCGACGGCCACGTGATCTGGTCGGCCGAGGGCAGCCTCACCGAGGTGATCGACGCGCTGATGTCGCTGCCGGAACCTCCCACGCGCTCACCGAACAGCTGACCGACGCTGGAAACCCTGCGAACCGTCCAGCTCGCCCGAGGTCCGATGGAACGCTTTCCATTTGCCGCCCATGCGCTCCACCCTGATCACCACCGAGAACGAACGCTGCTTATTCGCCCCCTCGTCGTCTTCCGACGAATATCAGGCACCGTTGAGGCAACACCGAGGGACCCCGGACTATGCGGCGGAGGACGGATGCACGGCCCTCACCCACGCTGTGTCAGACTGAATGAAAACGACCGGTTGGCCGGATAAAGGCCCAGGTCAAGAAGT # Right flank : GTCCGCCCTTTCGGCAGCGATACCAGGTCGGCCCCGCGAAGGATGCCGAGCTGCGCGTCGGCCGCGTGCATGGAGGACACCGCTGGCGGATTCGGGTGAAACCGAGGCCGAGGTAGAGCAGACCACTCAACTACACCTACGGGACGCGTGGCAGTGGCCCGACCTCCCGCGCGACGACGTGATCGCGCAAGCACAAGCGGCATTGCACCAGAACGACGAGCCGACACTGCCGATCCTGCGGTCCGTACTCACCGAACTCCAACGACTGACCACAGACACCCGAGCCAGCTAGGGAAACCCACAAACGCCCGATAGCCCTTCTCACCGCCGCAAGAGAACACGAACTGGCCCCCTGCGACGCCACACCGCGGACATCGGGCACCGTAGAGAGCAACAAGCCCCGACCATGGGGGTTGACCTCTCGGAGAACACGTGCACAACCCACGCCCACGCTGTGTCAGACTGAATGAAAACCGTTCCTTGGCCGAGTAAACCCGCAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 16177-15538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000008.1 Saccharomonospora sp. NB11 NODE_8_length_273423_cov_58.3722, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16176 29 96.6 32 ............................C GGTGGTGGCGGAGGTCTCGTCTCCCTGGGCGC 16115 29 100.0 32 ............................. GCGACCGGCAAGGACGGCTTCGCGCGCCTCGG 16054 29 96.6 32 ............................C TCGCGGGCGGCAGCGTCGACCGCTTCCTCGCC 15993 29 96.6 32 ............................A GTTCCAACGCGAGCAGTTCAGTGTGCGGGTCG 15932 29 96.6 32 ............................C GTGGTGCGTTCGTGCCTGCGCGGTGACGATGC 15871 29 96.6 32 ............................T CGGGGTCGGTGGCGTCGACGAACAGGGTGACG 15810 29 100.0 32 ............................. TCAACCGGCGAGATCGCGGCAGGGCGCGCGCC 15749 29 100.0 32 ............................. ACGTACTCATTGCGGCCGGTGTCAAGGGCGTG 15688 29 100.0 32 ............................. TACTCGAACGCGGAGTTCATCCAGTCCGAGTC 15627 29 100.0 32 ............................. GTGCCCCTGTGGTCTGCCGACATGTGGAGTCA 15566 29 82.8 0 ...........A............T.TTA | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.9 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : AACGACGACCGAGTCAAGCAGTACAGGGGAACGGCGAACGTCCTCGGCCGCCGCGAGCACGTACGCCTGCTGCCGCACCTGCCACTGTGCGCGCCGTTCGTCGGACACAAGGACGACCTGCCGTCGGAGTTGTTGCCGGACCCCGTGGTCACCCCCATGCCCGACGACGAAGTAGAGGACGCGGCGACGGGAGGCTGACACAGCATGGCGACGTCATCGCTGCGCTACGCCCGATCGCGCGCCGACGGGGATCACGCTCGCAGCGCTGCTCTGGACGGCAGGGAGGCAAGGCATCGGTGATTGAGGCTCCGCTAGGGCACGATGACAACGGCGATGCAACGCGCTCCCTGAGGGTCAGCCGGGACATCACCGAGGGAACTCACCATGGGAAGACTGACCTTGTCTCCTTCCGGAGAGAACGGATGACCACGCCCTACCGACCCTGTGTCAGACTGAATGAAAATCGCTCGTTGGCCGAGTAAACGCCCAGGTCAACAAGT # Right flank : TGAAGTTGTGACTGTTCGCCGGACGCGGTGAATGTCGGCCCGCCGCCTCCCCACCTGCCATGCCCGCCTCCACTGGGAGGCCCAGAATCAGCCCGTCGACAAAGCCTGCAACCGCCGTCCCACAACTGCGCGCGACAACCACGGACGCACACCTGGCCCCCGAGCCGGTTGTGCGACCGATCACACGATGTCCGCTACTCTCTGAGTCACTCTCTTCGCGGAGCCGAAGACCCCGGGCAAACCCCGGCTCTTGCGAAGGGAACGCGACTCCGCGAAGGGTGTGGGTGCGATGACGCCGCAGCCGGACGCCGACTTCCCGATCGGTCGGCGGATTCAGCGATACCGCGAACGCGTTGGCATGTCCCGTCCGGTGCTGGCGGGGCTTGTCGGCCGCTCTGCTGAGTGGGTCAAGGCGGTCGAGACTGGACGGTTGCAGGTGCCGAAGCTGCCGATGCTGCTCAAGCTCGCCCAGGCTCTCGGTCTTGAGGACCTCGCTGATC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 25329-25926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000008.1 Saccharomonospora sp. NB11 NODE_8_length_273423_cov_58.3722, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 25329 37 100.0 35 ..................................... ATGTTTTCCGGTAGGCAATCCACTTTCTGCTCGTT 25401 37 100.0 37 ..................................... GTTCCACGACATGTGCATGAACAGCGCGATCACGGCG 25475 37 100.0 36 ..................................... TAGGAATCCCTGGAGCTCTTTATACAGTCTGTTAGA 25548 37 100.0 39 ..................................... TCATGTTCATGATTCGGAGGAGATAACCTCTTGAGTGAA 25624 37 100.0 16 ..................................... TCTTCAGCTCCTTGGC Deletion [25677] 25677 37 100.0 33 ..................................... GGTAGAATCCTGCTGTGTCAGTCAGTGGGTTTC 25747 37 100.0 35 ..................................... CTTTTATTCGGGAAGACGAAGATACGTCTCAGCAG 25819 37 97.3 34 ...................T................. GTTCACATCATGCGGAGTCAGGTTGACGATATGC 25890 37 89.2 0 ...................T.............CTT. | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 98.5 33 GTCGCAAAGCCTCGCCCGACCTGAAGGGCATAGAAAC # Left flank : CGAAATGTTCACCATCGCCGACAAGCAAATCCGAGCGGTGACCGGCACGGTGTTCCTGCACGACATGGAAGGCGAGACGGTACGCACCCCGGTATCGGCGACCATGCACCAGACGGGCTTCCTCGGCTCCGTGAGGCTCGGACTGACCAAGTCCGCCGACCACGCCGCCCGCATGGTGTTCGCCGCGCTCCTGCGCTTCGCCGCCCTGGCCGGTGTCGGGGCCCAAACCACTCACGGCTTCGGCAGCATCCAACTGGAAGAGCTCTCCGCGTGATCTCCGGCAGTTGCAGGACGTCGCAACCGCCCAGTCAGAGGCCGGTACAGATCAACGACGAATCGCCGGAAAACCCGCCGGTCCTCGCAACCGGCATCGCCGCAGGTCAACGCCCTGTGGAAGGCGGAGGGAAGGCTGCCGCCGGACGGCATGTGGATCTTGCTTGTCCCGGTCCTCGCGACCGGCTACCATTTCCGCAGGTCACAAGGGGTGCCAAACCCGACCA # Right flank : CACAGTTGAATAGACGGGACGACATCTGACGCGTATCTGGGGGTGCCATGGGGGTGTTGTATTCTCGGGCTTTCACGCAGCAGGCGTTATTGGATGCGTGGGATCAGGTCCGGGATTCGGCGTTGGAGGATGGGCGTCCGGATTTCGAGGTGGAGCGGTTCGAGGCGGACGCCGCCCGGCTGATCAGTAAGTTAGCGGCCGAATTGCGGGAAGGCACGTGGCGGCCCTCGCCCGTGCGGCGGGTGGAGATCCCGAAACCGTCGGGTGGGGTGCGGCGGCTGGGAGTACCCGTCCTGGCGGATCGGATCGTGGAGCGCGCCTTGCTGGCGGTACTGGATCCCGAGATCGACCCGTTGCTGTTGCCGTGGAGCTTCGCCTACCGGCGGGGCCTCGGGCCGCGCGATGCGGTGGCGGCGTTGACCGAAGTCCGCGATACCGGCGCGACATGGGTAGCTCGTGCCGACATCAAGGACTGCTTCGAGCGCATTCCTCAGTGGGAA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGCCTCGCCCGACCTGAAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 28321-28653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBJG010000008.1 Saccharomonospora sp. NB11 NODE_8_length_273423_cov_58.3722, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 28321 37 100.0 36 ..................................... GCTCGAGCTCAGCCGGAGTCAAGCTCACTCCGTCCT 28394 37 100.0 41 ..................................... ACCTCCTCGCGCATTTCCCCTTGTAGGAATCCCTGGAGCTC 28472 37 97.3 36 ..................A.................. GTCCTTCGCACCTGGTGCAGGTGCAGCAGCCCGGGT 28545 37 97.3 35 ..................A.................. GGTAGACCTCGTCAAACTTCTCTACGAGTTTTCGG 28617 37 89.2 0 ...................C.............GGT. | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 96.8 37 GTCGCAAAGCCTCGCCCGGTTTGAAGGGCATAGAAAC # Left flank : TACCGGGCGCTGCGATGGAAATGAGGAAACAGTGATCGTGGTCGTGGCCTACGACATCGTCGACGACCGGCGTCGCGAGGACGTCGCGATGCTGCTGTCGGGATACGGGCCCCGGGTGCAACTGTCAGTGTTCGAATGCGAGGTGCGCGACCGCGACGAACTCCGTGCCCTGCGCGCCGCGCTCAGAGAATGCATCGACCCCCTGGAAGACCAGGTACGCCTGTATCCCACCACCGCACGAAGCTTCGAAGAGCGCTACATCATCGGAGCTCGCACCGTCGAAGAACGAGCCGACTACTGGATCGTCCGATGAGGTGGTACAGGCTGCCCCGTGGAGGCCGGGATTCGCGTCGGTCCTCGCAAAAGCGTCTGCGCAGGTCAAGCCCGATGAGAACAGTGAGTACGGGGTGGTGGAGTGCGATCCGCCAACCACCGTTGGAGCGGTCCTCGCAACCCGCTACCATCACCGCAGGTCAACACCCGCGCCGGACCCCCCATCC # Right flank : CTTGTCGAAATCGGTGTCGCATCCGGTGCTTTCCTTTGTTGTAAACTTTGCTGAGGATGAAACTCGCGTGCCCCGGTTTGTGTGTGCAAAAATCCAGGAAGGCCTGATGTGGAAGTGGCTTGCAGCGGCTGGATAGGCACTTGTAGGAGTATCGAAACGATATATTGCTGACAAGTCGTAGTCCGCGTGACTTCTTACCGTAAAGGCGTGTGAACAGCGGCTGCTGCACTGTGTACGGAACCCTCGATGGATCGGGTTCTGGCTTGCCACGCTGGGGGCACTCGACGTGTGAACTGCTGGCACGAAGTGCTTCACAAGGGCGGACAGGTGCAGGTTGTCAGCGCGAAGACGACCTGGCGGGCCGGCCCGCGGGCACCGACAGGGAGCACAGACAGGCCGGACGGTGCATCACCGTGATGCAGGCGGGCAACGCCTTCCGATGTCACTGCTCTCGCCGCAGCCATCCCACTCGACGGAACCGTGACTCGAAACGCACATCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGCCTCGCCCGGTTTGAAGGGCATAGAAAC # Alternate repeat : GTCGCAAAGCCTCGCCCGATTTGAAGGGCATAGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //