Array 1 69579-70705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUHM010000014.1 Escherichia coli strain Br1 14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69579 29 100.0 32 ............................. CGTCTGAACGCGTGGCCGGTGCTGTTCCGCCA 69640 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 69701 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 69762 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 69823 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 69884 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 69945 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 70006 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 70067 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 70128 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 70189 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 70250 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 70311 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 70372 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 70433 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 70494 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 70555 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 70616 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 70677 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96406-97898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUHM010000014.1 Escherichia coli strain Br1 14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96406 29 93.1 32 ............C...............T TAACAATATCCTGCCACTTTTCGTCAGAATCC 96467 29 96.6 32 ............C................ TTGGTGAGGTCCAGCCCAGGAGCGAGAGCGTT 96528 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 96589 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 96650 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 96711 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 96772 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 96833 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 96894 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 96955 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 97016 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 97077 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 97138 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 97199 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 97260 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 97321 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 97382 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 97443 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 97504 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 97565 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 97626 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 97687 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 97748 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 97809 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 97870 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.8 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //