Array 1 12972-11680 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOY01000023.1 Agrilactobacillus yilanensis strain 54-2 contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12971 36 100.0 30 .................................... CTCTGCAATGGATAATCAACACATTTGAAA 12905 36 100.0 30 .................................... GTGATGTCAACAAAGACAAATTTAAACGGC 12839 36 100.0 31 .................................... TCGGAAAGATGTACATGACGGAAGTTCTCAG 12772 36 100.0 30 .................................... AAGTACTCCACAGATTAATCGCGCAATCAA 12706 36 100.0 30 .................................... CAACATCTCGGATAAAGATGAAGACCCAGA 12640 36 100.0 30 .................................... TTAGCGAGCTACCCACAGAATTGGAAATGA 12574 36 100.0 30 .................................... TACTAGATCCATCTAGCTCACCGACCATTG 12508 36 100.0 30 .................................... TAACAACGCTAAGGAAGATGCAACTAAGAG 12442 36 100.0 30 .................................... TTGATTTTTTGATAAAGATAATCAGCTAGC 12376 36 100.0 30 .................................... AAAAAGGCAAGAAGATATTATTAGTCGTCC 12310 36 100.0 31 .................................... AGCGTTGACCGCTTCTTACAGCGCAAATTAG 12243 36 100.0 30 .................................... TACTATGAGTACCATTTCGATCTTAGCCAT 12177 36 100.0 30 .................................... GCTACCGTCTTCTTCAGCTGCTACTTTTTC 12111 36 100.0 30 .................................... TGAACGTGTCTAGGTCTTCACCGCCATAGT 12045 36 100.0 30 .................................... TCGGCGGCGAGCTAAGACGAAACTGGGAGT 11979 36 100.0 30 .................................... CTAAAATTAAGGGCCTAAAACAAGAATATA 11913 36 100.0 30 .................................... TGTTTTTAGATCACCAACAATCGTTGCCAT 11847 36 100.0 30 .................................... CGCCCGTCAGACTACTACTACTGTTTAGTT 11781 36 100.0 30 .................................... GGTCTTGCGGTTGTTGGTGGAAAGTTTGTG 11715 36 94.4 0 .......A..........................G. | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.7 30 GTTTCAGGCGTATGTCGTATCAAATAGGTTAAGCAC # Left flank : CGGTCGTCAAATTATTACGATGATTATGCACGAACTTGACGAGACTCAAAATCATCGACTTTATGATGCAAATTGTGTTATAAAGGACGTTGTAAATGAGGCTATTTTTGAAGCAAATTTACCAATTGATTTACCAACAGACTGGGATCTTCAAGCAATGTTAAAATATTTAAAACCACAATTAGAGTTGACAAATTTTAGATCTGCTTATGATATAATAGGATCATTGACAGATATTACCCAACGATTATCAGATAAACGATTGTTGATTTTTACGAATATCGGTCAGTATTTGACATCTGAACAAATTAAATTATTAGCACTTGATCTTAAAAGCCAGCACCAATCAGTTTTATTTTTAGAAAAAGTTAACACTAAGATCGAGGTATATCAAGGAAGTGAAGGTATTAAAATTGTTTATATCGACAATGATTTTGTTGAATTTGAAAATGGTTAGTCAGATTCAGATAATTTCTAGTCGTGATACGAACATGCTTTCT # Right flank : ACCATCACATCAATTAATGGTGGGTTAGTGTTCCAATGAACCAGTCTAAAAGATTAAATCACAGCTAAAATAAAGAAGAGAAGCCCAAATATAGGTTTCTCTTTTTTCACAACTAACAGTATTTTTAGTGGAGGAGATTAAAAATGAAGGTTTACGTTCAAAGTGCCACTAATTTTGAGTTACCCTATAGCACAAATGGGTTTATTGCAATGCGAGGCTTTCACGATATGGGCTTTGAAGTAAACACCTTTAAAAATATCGCTGAACTTGATAGTCAGTTGCATTCAGAGGATATTGTGGTTGGTGGTGTGGGTACTGTTCGGCAAAGATTATTTCAGCTTGGTTTCCCAGCAGAAGAGATTAATTATCCAGAAGAAATACAAAGTTATCTTGGTCGAAAACTATGGTTCAGCCATATTGACGAGGTGAATAGACATCCCGAATGGTGGCCGCTGTTTGTAAAACCAGTCACCGGTAAGAAATTCACTGGAAAGGTTATT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGGCGTATGTCGTATCAAATAGGTTAAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 119417-118240 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOY01000004.1 Agrilactobacillus yilanensis strain 54-2 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 119416 33 100.0 35 ................................. AAGACTGGGTCACATCGGAGGTCTTACCATCTATC 119348 33 100.0 35 ................................. GCCATTGATATGCATGAGCACAACGTCTTTGTCCC 119280 33 100.0 35 ................................. TGTAATGTCCCCAAACACGCCGTCTTTGTGATGGG 119212 33 100.0 33 ................................. TCTGTGTCTAATCTCAATAACTAGTTGATCAAC 119146 33 100.0 34 ................................. GCATAAAATCACTGAATGCCTTTGGCTCAAAACG 119079 33 100.0 34 ................................. GCACCAAAAAACTCGCAGAAGCCGCCGCCGTCGC 119012 33 100.0 36 ................................. CAAAAATTTTAAGGATTCTTTTTTGCCTGGATTACC 118943 33 100.0 36 ................................. GTATGAGGATTATCTGACTCCTTTAGTAATTCTGAT 118874 33 100.0 34 ................................. CTGTTACGATTGAGGTAATTATTTGTACAGCTGT 118807 33 100.0 34 ................................. TTTTGCAACCACCACAAAAAATGGTAAGGCTATT 118740 33 100.0 34 ................................. TCTAGTCCCACGTTCCCAAGTCCCTATTGTTTTA 118673 33 100.0 34 ................................. GCTTTGAGCAAGTCCAGACTAGATATCACTTAGC 118606 33 100.0 33 ................................. TTGCTGCAATCCCTTGACGCTGAGAAAGCATCA 118540 33 100.0 34 ................................. CACCCAAGCCGCGTACTCTGTCGGATTAAATATC 118473 33 93.9 33 ......T.........G................ TGTTAAAAACTTATCGTTTAGCTGCTCAACGTC 118407 33 97.0 33 ...............................G. AACAGATATAAATAACCCTAAGAAAGAAATTAA 118341 33 97.0 35 ................G................ CACATTTATTTGGATCTGTGGTACAACTTGTTTAT 118273 33 100.0 0 ................................. | C [118247] ========== ====== ====== ====== ================================= ==================================== ================== 18 33 99.3 34 GTCGCTCTCTGTATGGAGAGCGTGAATTGAAAT # Left flank : CATATTTGGTTATTCGCTGCACCACAGACGATCAGTGAGAATTTTAGAGTGATTGATAGTCAGACAACTTCGGTTATTGTGCCTTACAATGATAAAGGTAATAATATTATTACAACGCTTTTATCAGATAGTGCTTCTTTTGAAGAGATTTCAAATGCACTTAAAGAGGCTCAGAATTATTCAATACAGATTTATGGCAATTTGAGTAATTCAAATGGCTTTACAAAAGGTATATCCGCAGTTGAAACGTTTAGAGGCAGTTTGATATACTATGCAAATAGTGGTAGTTATGATGATAATGTTGGTTTCACCAATAGTCTATCATTGGCCATGTTTTAATTAAGCGCGAATGCCGGGTAAACATGAATTGACCGGGGGACTCGCGCGAGGTATTTCGAATATTGAGCAATTTTAAGTAAATATTATTAAAGTTAATAAGATTTAACATGTTCTAGCCGCAAGATATAGTTCTGGTTGATATTTTTTTACAATATATTGCG # Right flank : TACAAGAAACATGCATGGAAATAGACCAACAAAAAAAGTGCCGATACGTAAAAACGCATCAGCACTTTTTATCTTTATAGCCCGTACGGGAATTGAACCCGCAGCTCCGCCTTGAGAGGGCGACGTCTTAAACCATTTGACCAACGGGCAATAATGGCACAAAGACTATTGTAAACGAAAAGCTAAAAAGATGTCAAGAAAAAATTAATCAGACTTATCAAACCACCAAATAGCAATCATAACTACAAATAATATAGCACAATATAGAACACAAATATCAAAGGCAAGCACTAACCACTGATAAACAAATATTTGGCGTAAAATCAAAAGTAGTAATGAAAATAAGGCAAAAGTTAGAAGTTGATAGCGCAAATTTCTAAAAATTCGTAAATATGTCTTGTGTTTCATTATTCAAAAGACAGCTCGGCCAGCACTAAACTAGATGTTTCTAAATGTGCAGTCGTTAACCAGACACTAGTGAAACCGTTCTCATTTTTTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTGTATGGAGAGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 127933-128569 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHOY01000004.1 Agrilactobacillus yilanensis strain 54-2 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 127933 33 100.0 33 ................................. CAGAAGTTTTAGTATTAAATACGGATGGCAATT 127999 33 100.0 35 ................................. AATGTCGACAACTTTTAGCTTATCAGCCTCTTCCA 128067 33 100.0 34 ................................. TAACTCTATAGTACACTCACTCACCGTATGTGTC 128134 33 100.0 34 ................................. CGGCCCACCTTTGGATGTAATAATTGCTTCTTTT 128201 33 100.0 34 ................................. AAACATTACTGCGCAAAGCTTTTATCCGAAAACA 128268 33 100.0 35 ................................. TGACTGCAATCACCGTGATCATCGGTACCCAAATT 128336 33 100.0 33 ................................. AATTGATAAATAGTAATAATTATTCTACTACTC 128402 33 97.0 35 ......T.......................... GCTTCTTAAACTTTTCATGGTTTGGATGGGCTGTT 128470 33 100.0 34 ................................. TGACAAGTCATCGTAGCGTCGGCCGCTGACTGGA 128537 33 90.9 0 ..............A.............A...A | ========== ====== ====== ====== ================================= =================================== ================== 10 33 98.8 34 GTCGCTCTCTGTATGGAGAGCGTGAATTGAAAT # Left flank : CGAATTATCAGTTTGTCTCCTCGTTTCTCATGAAATTTCTCATCATCCGCTCGTTCATGGAACTGTCTGCCTTCATATGTGAGAATATTTTCTTGCCACTGTTGTTCAATATGTATCAATGCCCACTGACGTCTACAAAATAAAAAATGTTGAATTCCTGAAATTAACAAGTAATCAGATTCATCATACATCTCTTTATCTCTCCTTTCTCTAGTTACATATTAGTACTTTTTATGTAAGCATTATTTTTAATTTTTGAGTATTATTTATAATAATTTTAGTCACATTAATATTGATTACTCTGTTATACTAAAAAGATGATCTTTTTCAAAAAAAATTATAGCGCGCGAATCTAAGGTGACCATGTTTTTACCAGGGGATTCGCGCTAGTTACTTTTATAATTGCTTAAATTTTGATAAAATAATATTATATTTATGCTATTAACATGTTACAGCCGCAAAATATAGTTCTAATGAACATTTTTTTACAATATATTGCG # Right flank : AAACCCAAACAAAAAGACATTAAAGCCACCTCGTACTGCTTTAATGTCTATACACGCATTATTATTTTTATCATCACTATGCTTTGTGTTCCAAAGCTTTAATTGCAGCCTGGATTGTTATACCTGAGCCCGAATGCTGTTTTGTATCAATCACGGTAAAAATTTGTTTCTCTGTATCCAATAAAATTTTGTACTTCATAATAAAAGCCTCCTAAATAAATTCTTAGTGGTGCCTCCTAATGGAGTATCTTATATTTACGCCTAAATTAAAAAATTGTCAACTAAAACACTTTTTTTGCAATCGCATCCACAAAATTCTGCTAAACTTAGAGTAGATAAAACAAATGAGGTATTGTGATGCAACTAAACAATTTAAACGTTGCCGTTACTGGCAAATTGGAAACCATGACCCTCCAGCACTGTCTAACCCTGCTCAAAATTATCCATGCAAATCCCCAGTCCAACGTGAGCCAAACCACTGATTGCCTAATCGTGGGCAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTGTATGGAGAGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //