Array 1 306206-307210 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTZ01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3296 NODE_1_length_433225_cov_2.38238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 306206 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 306267 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 306328 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 306389 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 306450 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 306511 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 306572 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 306634 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 306695 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 306756 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 306817 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 306878 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 306939 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 307000 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 307061 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 307122 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 307183 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 323775-325146 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTZ01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3296 NODE_1_length_433225_cov_2.38238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 323775 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 323836 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 323897 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 323958 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 324019 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 324080 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 324141 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 324202 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 324263 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 324324 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 324385 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 324446 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 324507 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 324568 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 324629 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 324690 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 324751 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 324812 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 324873 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 324934 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 324995 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 325056 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 325117 29 100.0 0 ............................. | A [325144] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //