Array 1 63941-62387 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMIL01000015.1 Escherichia coli strain MOD1-EC6367 MOD1-EC6367_15_length_89431_cov_31.9641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63940 29 96.6 32 ............................C CGAGGAATCGCGCCAGCACGTCGTCCGGAATC 63879 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 63818 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 63757 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 63696 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 63635 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 63574 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 63513 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 63452 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 63391 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 63330 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 63269 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 63208 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 63147 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 63086 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 63025 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 62964 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 62903 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 62842 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 62781 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 62720 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 62659 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 62598 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 62537 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 62476 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 62415 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1021-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMIL01000017.1 Escherichia coli strain MOD1-EC6367 MOD1-EC6367_17_length_87433_cov_31.1505, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1020 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 959 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 898 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 837 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 776 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 715 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 654 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 593 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 532 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 471 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 410 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 349 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 288 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 227 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTTCCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //