Array 1 186442-183481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCM010000005.1 Salmonella enterica strain LB18 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186441 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 186380 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 186319 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 186258 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186197 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 186136 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 186075 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 186014 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 185953 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 185892 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 185831 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 185770 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 185709 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 185648 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 185587 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 185526 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 185465 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 185404 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 185343 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 185282 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 185221 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 185160 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 185098 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 185037 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 184976 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 184915 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 184854 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 184793 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 184732 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 184671 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 184610 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 184549 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 184488 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 184427 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 184366 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 184305 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 184244 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 184182 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 184121 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 184060 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 183999 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 183938 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 183877 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 183816 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 183755 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 183694 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 183632 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 183571 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 183510 29 96.6 0 ............T................ | A [183483] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204074-202701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXCM010000005.1 Salmonella enterica strain LB18 contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204073 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 204012 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 203951 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 203890 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 203829 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 203768 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 203706 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 203645 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 203584 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 203523 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 203462 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 203401 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 203340 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 203278 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 203217 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 203156 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 203094 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 203033 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 202972 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 202911 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 202850 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 202789 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 202728 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //