Array 1 41903-41743 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 41902 30 100.0 35 .............................. AGGAAAGCTCTTGCTGTCTCTTCATCTAACTTTAA 41837 30 100.0 35 .............................. AGCTATTTGCAACCTGGGAAAGTCAGGTGACTCAT 41772 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 98.9 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : AATATGATTATGAAAGGATATAGTGACTAAGAGATAGCAGATATAACTGGTCTTTCTCTTGAGAAGATACAAGAGATTCGTGCAAGGTTGAAAAATTAAAAAAGGCTTTTTTGAGAAAAAGGAAGCTGGCTTTTCTGATTGAGGCTGGCTTCCTTTTTTGTTTTTGCTGCAGGATAAAAACAAATACAAGAAAAGCTGCACAGAGAATTTTGGTTTTGAGAATTTATACAGCAAAATTGTATAAAGTCTACAATTTGACCGAAAGTCAAATCTGTCGACCTGAGGTAGCTAAATTTAGAGGTCTGGTTTGTATACGGTTTCAGATTTGAAGTACGTGGTTTTGCTTTAATCTCTGGCAGCAGCTGGATAGACGGAAAGGGTTGATAGGTTTTTATCGCTTGACTTTCCTTAGCTGATATTAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGGTGTGCATAAAGTTGATATAATAAAATCAAGCTCTTCAACGT # Right flank : TTTATTTTCTGCCTTTCAAACATATTTTTTCACAGTTGTAGCCCGCATTAATGTCTAAATTTCGCAAAAGATTTAACTTCAATTCCTGCTTTTCCAATTTTATTATTACAAGAGGAATATCTCTCTTATAAGAAGGGAGAGATAACATTTATCTTCTATTCCAAAAAGTTCAAAGGAAGTCTATGCCCAGATTTTACTTGAATATCAAGCCTAATTAGAGTTTAAAAAAAGAATAGAAGGAAAGTGTTACCTGTCACACGATCCCGAATATGTCCTTAACCTGTACTGCATTTCCACATTTAGTGAAAAATATAAAAAATGCTAAAAGGCAAACAGATTGAAAATTATATCGAACCGCAAACCGAAGAAGAAGTGGAAGAACACTTTTTTGAAGAAGATGAATATTTCAAAGAAGAATTGGAAGATGACTTTGACCTTTTCGATGCGGACTATGAGATGTCAAGCGAAATGGACGATATTGTTGACGACCCTGATTTTTG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 52952-53111 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 52952 30 100.0 36 .............................. TTAATGGTAGCCGATGGTTGTGTTCACGGCTGGCAG 53018 30 100.0 34 .............................. ATGTATATGAAGTAGGACAAGAATTGGAAAGAGA 53082 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAGTCCCCAAAGGGGAGGCTACAAAC # Left flank : TTCAATTCTGAAGAATGTGCAAAAATATGATGCAAACTCACCGCTTTTGTGCAGTTTTCTTGACATTGAAAAAGATGAGATAAGAATAAGGCTAAAAGAAGGTTCGCGAAAGCTTGATATAAAAGATATTCAAGATGGGAAAGTAAATGGCATAGAATCGTATTATGGACAGATTAGCTTCTACGATAGTAATAAAGATTTGTCTGAAAAATTTGATGGCTGGCTTGAGAAAAAGGTTTTGGAGTACCTGGAAAGGAGTAATCAAAGACATTGCTATTAATCGGACAAAATCAGGATAGCAAATTGCTAAAATAACTCAAAATTTAATAAATTTTTATTGTTTTCTGCCAGAACGTGAGACACCGCAAAGGTCTATACAGATTTATATAATGAGATAAGAAAGAGATTGAAGAAGACTTAAAAGGGAAGGCAAATATAAACATCGACAGGAAGAGAGGAACTAAAAAACCTCTCTTCCTGTTTTTTTATATAAAGCACCT # Right flank : CACGTTGAAGAGCTTGATTTTATTATATCAACTTTATGCACACCTGTCAATGTTTTTATATCAAAACATCTGTGGAAAACTAATATCAGCTAAGAAAAATCAAGCAATAAAACCCTATCAACCCTTTCCGTCTATCCAGCTGCTGCCAGAGATTAAAGCAAACTCACATTCTTAAAATCTGAAACCGTATACAAATCAAACATCAAAATTTAGCCACCTCAGGTCGACAGATTTGACTTTCGGTCAAATTGTAGACTTTATACAATTTTGCTGTATAAATTCTCAAAACCAAAATTCTCTGTGCAGCTTTTCTTGTATTTGTTTTTATCCTGCAGAAAAAACAAAAAAGGAAGCCAGCCTCAATCAGAAAAGCCAGCTTCCTTTTTCTCAAAAAAAGCCTTTTTTAATTTTTCAACCTTGCACGAATCTCTTGTATCTTCTTAAGAGAAAGACCAATTATATCTGCTATCTCTTAGTCACTATATCCTTTCATAATCATC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCAAAGGGGAGGCTACAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 62055-60110 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 62054 30 100.0 36 .............................. AACTTGCAATGAGTCAGGGACTCTGGGCAGTGCTAT 61988 30 100.0 36 .............................. TCTTTCTTATTAAAGAAAATATCAAATTCAACGTCA 61922 30 100.0 35 .............................. TTGGATACAATCATTTGGATGAGTTGATTAAAAAA 61857 30 100.0 36 .............................. GAAAATCAAAGTGAGGAGGATGATTTAAGATGACTG 61791 30 100.0 35 .............................. TTGGATACAATCATTTGGATGAGTTGATTAAAAAA 61726 30 100.0 36 .............................. GAAAATCAAAGTGAGGAGGATGATTTAAGATGACTG 61660 30 100.0 36 .............................. ACTTGAAGCGATTGTTAGATTGTGAAATTCTTATAA 61594 30 100.0 37 .............................. AGTTTTTAGAAAAAGCTGAAGTAACAGGTAAGGCAAA 61527 30 100.0 36 .............................. GAAAATTTCAGAAAGGAAAAAAAGCTTTCTAAGAAA 61461 30 100.0 37 .............................. ATGCAAGTAATCGTCATATCGCTCTTGTTGATTTTGA 61394 30 100.0 36 .............................. TCAAGCAGAAGGATACGCTGTGATAGCACTGTCAAA 61328 30 100.0 36 .............................. ACTTCAAGCTAGTACCTGCATCACTTCCTACAATGC 61262 30 100.0 36 .............................. TCTTGGGTCAAGCCCTATGCTGCTCAAGTATTCCTT 61196 30 100.0 36 .............................. ACTAAAAACGGCATACAGACAAGTGAGGCAGTTACA 61130 30 100.0 35 .............................. ACAGATGGGGTGCGATACAAATTACACAAGAGTTA 61065 30 100.0 36 .............................. ATGAAATGCGAGAAGAAATTTTAAAAATTATATCTG 60999 30 100.0 36 .............................. TTGAGGTAGAGGAGTAGGGCTTGCCCCTACTCCATA 60933 30 100.0 36 .............................. AAAAAATAAAAATGGAGGGTGGTTGTATGAACTGTT 60867 30 100.0 36 .............................. CGCATGTGCAATATCTCTTTGTCACCCTTTTTACCG 60801 30 100.0 37 .............................. TCTTCAACTGTCTTTTATAGAGAGCGCTATCATAACG 60734 30 100.0 36 .............................. TGTTTTCATCAACCAAAATTGCTTTCATCTTCCTCT 60668 30 100.0 35 .............................. CGATATCAACCGCTATAGTGTACTTATTATTTCTG 60603 30 100.0 36 .............................. AACCCTCCCTTTTTTTTATTTTTTCAACCCCAACGG 60537 30 100.0 36 .............................. CAGGCGAAGCTGGAGCTCTACAGGCGAAGCGCAACA 60471 30 100.0 36 .............................. GCTATGGCACAGACGATAGCGAATAAGCTTTTGCAG 60405 30 100.0 36 .............................. GCCATCTCTTCTTGTGTAAGTCCTTTAGCCTTCCTT 60339 30 100.0 36 .............................. AAAGAATTGAGAAAAGAACGTGGTTTGACACAGCAA 60273 30 96.7 35 .............................A TTTGCTCATCACCCATATTTGCATTTGCTTTGATA 60208 30 93.3 39 ...........C.........A........ TTGATATCAACAAGTGCTTGAATTCTGTGGAAACCATTG 60139 30 83.3 0 ...........A.......AA....A...A | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.1 36 GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : ATCTCTGGTCTCCTCCCATATATTTCAATTTCCTACATTACTTCTTGAGGATATTATGAAAAAAGTAGGCACCTTCTATTCTCTGTTCTGTAATAAATTTGGTGGTAAATATGTCTTCACCACGTACCATTTTGAACTTGCAATCCTCGTTACTTAGTACACTTTTTAATTTTACATACCATCATTTAATTATTAAGGTCAAATTTTATGCAAAGTTAATTAGCTTTATATGTCATTTTTTTCATTTTATATTATTTTTGCTTGTGCAAAAATTGCTATTTTTAATTATGTACTCTGAGATTTGTGATGTATTTTGACTTTTGCATTTACCAATTGCTGTCGACCTGTAATCCCCCCAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGCTTGTGGAGTATAATAGAAATAACCTACAGCAGCTTGAAAACTTAACCATTTGTTCCTTGTAAGATTTCTCAAGCCATCTACGG # Right flank : AATGAAACTGTGAGACCGCTTTTGTGGTATAATTAAATTGGACAAAAAATAAAACAAACTCAACATCTTTGGCTACAGAGTGTAGAATTTTGTTCTGAAAAAATCCATAAATCGGAGTGAAATTGCCTTGAGCTCTGAAATTCCACCAATGGAGCGTGATACCACTTTTAAGTTCTTGCTCAAAGACAAAAAAGAGCTACTTGTGCTTGTAAAAGACATTCTCAGATACAGCTGGGCAGATGAAATAGATGAGGAGTCTATAGAATTTGATGACAGCGAATTTGTAACACAGAAGCTATCCCAGCTCAGAGCTGATATTGTTGCAAAAGCAAAGCTAAAAGGAAGAGAAGTATATTTTTATATCCTGATAGAGAACCAGTCGACAGTGAAAAGGGATATGGCACAGAAGATACTGAAGTACATGGTAAGCCTGTGGTGGAAGGAACTTAGCAAAGGGGCAGAGAACCTTCCGCCTGTCATACCCATAGTTGTGTACAACT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 4 90832-90671 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 90831 31 96.8 33 T.............................. TTCTTCTTTGCTTTCCTCTTCAGCGTCTAAAAC 90767 31 100.0 35 ............................... AGGGCATCCAAAACCACCTCTTGTACGCAGAACAG 90701 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 98.9 34 CGTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Left flank : GCAGAATAGAGACAGCTGAGAGGATGATTTTAAAAGGTTACAAAGATGAGGAGATAGCAGAGATTACAGGGCTTTCGCTTGAGAGAATAAAAGAACTTCGTGCAAAGCATAGAAATTGATTGAAATTTTGAAAAATATCCTTTTGCCACAAGCATTTTTTGGTGCTGCTTGTGGCTTTTATTGTTTTAGCAAGCAGCAGAATAGAGATTTCAACTTTTGAGTTATTATTCGAAAGACAATTTATATTATTTCATTTTGACCAAAAGTCACATCTGTCGACCTCAGGTAGTAAAATTTTAAGGTTTGATTTGTATGCGGTTTCATAAAGATTTGACATGGTTTTTGCAAAGTTTCTGGCAGCAGCTGGATAGACGGAAGACTTTGAGGTGGCTATATAGCTTGATTTTTCTGGCTTGATGTGAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGGGATGCATAATCTTGATATAATAAAATCAAGCTTTTTTACG # Right flank : CACTCTATCAACAATAAAAAAAGCCCCTCAAATGTGGAGCTTTGTATTCGGTTTTGCTGCTGCACTGCGTCAGCGAATAACATCGCTGCGTGCAACGTAGCATATCAACACACTACTATGATATCATATAAAGCTAAAAAATTTTTCCTGAAATTTTTTAAAAGCCTATTGACACGTGTAATTAACACGTGTTATAATATAGCTGTAAGGAGGAGGTGAATTTGAAACCCAAAGAATTAATAAAAATACTTGAAGAAGACGGATGGTATGAAGTTAGACAAAAAGGTTCACACAAACAGTTTAGGCACCCTGTTAAAAAAGGATTAGTGACAGTTCCATATCACAACAAGGACCTTGACCCAAAGACACTAAACAGTATTCTTAAGCAAGCAGGGTTAAAATAAAACCCTGTTGCTTAAGATATTAACATAGAGTTTAACTTTCTGGAAGTTAACTGTTTTGAGGTACACCATAAAAGAAAGGAGGTTTATTATGGCAGA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTTGTAGCCTGCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 5 93317-93158 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 93316 30 100.0 33 .............................. ACGGAGACAAGAGGTTAATAAGCTTAAATTATG 93253 30 100.0 36 .............................. GCCGCCAACGTGTAACGCTCGCTTTTGGGGAACTGG 93187 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 35 GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Left flank : TTAAACTCAACACCTTTACAAATTTCTTCTTCATTTTCTCAACTCCCCTAAATTTTACCTACAATTTGTATTTTATCTATTATTTTGGCTTTTTCAGTTCAAAAAATATGCGAAGTTGATTTCATGTTAAATTCATTTACTGGGCTGCTTCAATTAAACTCATACTTGGTTACCTATAACTACTCCGCAAAATCACAAGATGGGTGATTAACAATTTGTATTTTTAAAACACACAAATAGAATATTATTTCATTTTGACCAAAAGTCACATCTGTCGACCTCAGGTAGTAAAATTTTAAGGTTTGATTTGTATGCGGTTTCAAGAAGATTTGACATGGTTTTTGCAAAGTTTCTGGCAGCAGCTGGATAGACGGAAGGCTTTGAGGTGGCTATATAGCTTGATTTTTCTGGCTTGATGTGAGTTTTCCACAGATGTTTTGATATAAAAACATTGACAGGGGTGTATAATCTTGATATAATAAAATCAAGCTTTTTGACGT # Right flank : GCTGTGGTTGAGATTGCAAAATTCCTGTATCTATAGTATCAATAAAATTAAGTGTTCTTCTTGGTTTGTTTGATTGAACACTTTTTTCCGATATGTTAAAATTTATTGTTAGAAGTAGTTTTATTAAAAGGTGACTAAAATGATAATTAGGAAAATAGTAAATGGCTATCAACTTGAGAAAATAGTGGACATTCCAGAAGCAGCAAAAAATATGCCTGTTGAACTGATAGTCAGAATACCTTCAAATAAAAGAAAAAAAAGTAAAAAAGGTGATGAAATTCTAAACGAATTGTCTGGTGTGTTTGGCAAATATAAAAACCCTAATTTAATCCCCAGTGAAGAAGAAGCATGGAAGAATACTGTGAGGGAAATATATGAGAAAGAACAAGAAGAAAATTTTAAAACTAATTGATGCCAATGTGATTCTGCGTTTTTTACTAAATGACATTGCTGAGCTTAATCAAATTGCCAAGGAAATTATCAAAAACAATGAAGTATTA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 6 344075-347921 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 344075 29 100.0 37 ............................. ATAGAGGTACCAGGACAAGCTTGGCTCGAAGGAGAAG 344141 29 100.0 38 ............................. TTCGACATCTCAGAAGATTACGGAGCTGGAGAAAATCC 344208 29 100.0 36 ............................. CACTTTTTATCTTTCTATAATCCGCTTCTTGCATGT 344273 29 100.0 37 ............................. AGATTTGAGACAGATCCAGGTGAGCAAGCGCAAGTTG 344339 29 100.0 37 ............................. GAAAGCTTTTGGGCGATGCTTTTATCGAGGTTGTCAA 344405 29 100.0 38 ............................. ACTGCATCTGTTACCTTGAATTTATTATGCTCTATAAA 344472 29 100.0 37 ............................. TGTGAAAGCAATTGAGCAGACGTTTGGGGCTGGACAA 344538 29 100.0 35 ............................. ATTCCTGAGTACACAACTCCTAAAACCTTAATGGC 344602 29 100.0 36 ............................. TATGAGTATAGACGCAGTGTAATAAAGTCAAAAATT 344667 29 100.0 38 ............................. TTCGGCAAAAACAGCATTCATGACATCTTATGCAATGA 344734 29 100.0 37 ............................. TTTTGCAAGGGATAGATACGACAGTGCATATTATAAG 344800 29 100.0 36 ............................. GGATATGGGTGTATTCGATTTTACTTACAAGCTCGG 344865 29 100.0 37 ............................. AGTAGATAGTCTGTTGTAACAGAAAAGTAATTCGCTA 344931 29 100.0 38 ............................. TGGGCTGTGGCCCGAATGATACTCAACCCCAACTGTCC 344998 29 100.0 38 ............................. CTTTCTTTCTCTTTTCTATTTCTTCAAGCTTAGGTCGC 345065 29 100.0 35 ............................. CTTCGCATTGTGCTTGCTTAACCTCTTCTGGAACA 345129 29 100.0 37 ............................. GCGCTTAGCCCGGGTAGTGGTAGTTCACCTTTTTCTG 345195 29 100.0 35 ............................. CTGCCCAAGGGGTGGCGGGCCGGCGGAGTAGATTG 345259 29 100.0 37 ............................. GTGGTTTAACAATGCTATCAACAACGTGAAGCAGGCC 345325 29 100.0 37 ............................. TGCAAACTATCTGTTATTGCCATTGCAACAATTTCGA 345391 29 100.0 37 ............................. CTTTGAAACTTGCCCAGGTAATAATTACCTGCTTTAA 345457 29 100.0 39 ............................. TTGCTGCAAGTCATAATCAGACTCCTTGATGTCGCCCCA 345525 29 100.0 36 ............................. TTAAGCCTTGTTAGCAGTAATTACAACCAAAGCCTC 345590 29 100.0 35 ............................. AGCTTTGCACAGCTGCACACAAGAGCAATTGAGGT 345654 29 100.0 37 ............................. GTGATTTGGGATAGTCTTAAAAGTTTAGTAAGAATAT 345720 29 100.0 36 ............................. TTCCACTTTCAGCTAAACCGCTTTTAAGCTGTCCAA 345785 29 100.0 38 ............................. CATCAATCAGCTGATAATTCAAAGCAAAATTGATGTGA 345852 29 100.0 37 ............................. TTCGCAGTTTTTGAAACGATACATAGCAATAGCTCTA 345918 29 100.0 37 ............................. TTATTACTCACCTTCCTTTATGATTTCAAAATTGCAA 345984 29 100.0 38 ............................. TTTTCATTGCTGGGTCTAATCTCATTCTGATTCTGTTT 346051 29 100.0 36 ............................. TTTATCGGGTAAGAGATAATCTCGTTGGTATATACA 346116 29 100.0 37 ............................. ATTACTACGTTCAAAAGGCAGTTTCCTTTAGTATTGT 346182 29 100.0 37 ............................. TGTGCGAGACAGACTTGAAAGAGAAAAGCCTTTAGAA 346248 29 100.0 37 ............................. CAAGCTGGCTTGCCAATCTCAAAACCTTTTTCATTGC 346314 29 100.0 37 ............................. ATTGTACCCGGTAACTAGTACTCTTCCGTCTTTCTCG 346380 29 100.0 37 ............................. TCTTTCAGAAGCAAAGAGAACTATTGGAGAAGTTTCA 346446 29 100.0 37 ............................. CGGTTAGAACCGTCGGGTCCAATCGGACGGTCATTAG 346512 29 100.0 38 ............................. ATACAACTCAAGCAGTTTTTCCTGCCTTTCCCACTCTT 346579 29 100.0 36 ............................. CCCCAGAGCTTTGATTTTAGTTCCGGGAAAGTTTGA 346644 29 100.0 36 ............................. GAAGAGGGACAGGCCAGGTTAGCTACAAGCCATACC 346709 29 100.0 36 ............................. AAATTCATCTATCGTTAAGCCCATCTTCAAACATTG 346774 29 100.0 35 ............................. ATTCTGTGTAAAGGATAGTGCCGTTTGCGTCGTAA 346838 29 100.0 37 ............................. AATCATAGGCTTTGATGAGACTTTTCCAGGAGCTACA 346904 29 100.0 37 ............................. CCTAAATATTTTCCCTGAGCGGCTATTTGCCATCAGG 346970 29 100.0 35 ............................. TTTCAGGAGGGCGTAGGCCTCTCTGCCCCTGCTGG 347034 29 100.0 38 ............................. CCGTGAGGTAAGGCAAGAGGTCGTCAAGTTTATAGATA 347101 29 100.0 37 ............................. TTATTTTTCGCAGCTTCCAGAACGGCCTGTGAGGAGA 347167 29 100.0 37 ............................. TATACATGTCGTACAGTTTTTGTGCGTCCAGCCCGGA 347233 29 100.0 38 ............................. GACAGTAAAGCTTGCAATTTCGCCACGATTGCAGACAA 347300 29 100.0 38 ............................. GATGTGGCAGGGAATCTCCTCTACAAGTGATGAGAGCA 347367 29 100.0 36 ............................. ATTGGAAGAAATCAACCGGCGGTTGACCTACACCCT 347432 29 100.0 38 ............................. ATTGATGTTCCAATTTCATATAATCCTCCGTATCAAGA 347499 29 100.0 37 ............................. TTGCGACTTTTATTATTCCATGCTCAAAAAGTTTTGA 347565 29 100.0 39 ............................. ATTACATTATATCAAAGTGGGAGGGGAAATGCAATGTTA 347633 29 100.0 36 ............................. AGAATAACAGCAGGGGAAACAGGAAGTAAAGAGCAA 347698 29 100.0 36 ............................. TCTTATTTTCTTTTGTTTGCTTTCCTGCAACAACTC 347763 29 100.0 36 ............................. GTATTGCTATCGAAAAAAAAACATATGAAAAATTAA 347828 29 100.0 36 ............................. CTTTTCAGTTCAAATAATATCTCGTTCGCAAGGAAA 347893 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 59 29 100.0 37 GTCTTATCTGAACTATGAGGGATGTAAAC # Left flank : TTATCTTCCTATGAGGGAGTGATGCAAAATATTTGTAATAGTTACATACGACGTTAATGAAAAACGTGTGAATAAAGTTCGAAAAATTTTGAAAAAGTACCTCACTTGGGTACAAAACTCTGTATTTGAGGGTGAAATAACATATGGCAAGCTTGAAAAATGCAAACGGGAACTTTTTTCTGTGATAGAAAAGGATGAGGATTCAGTGTATTTTTACGAGATGGAGTATAAAATTGTATGCAGCAAGAAGATACTTGGACAGGAGAAGAACTATGATTCTGTGATACTGTAAGTATTGCAAGAAACAACCAATTTGCAGCAAACCTAAAAAAGTAACAAGCTGAGCAACTAGCTTGTCAATTCTGCAAAAGAAGTCGATTTAGTATTTTATTCCAACAACCTATCACCCCTTTGCTGCAAATAATATTGATTGCAAAGTAATATGGGATAAGGTATAATTGTAGGTAGTAACTGAGTTACAAGGTTTTTTATAAAAGTGG # Right flank : CTTGCAGCTTCGCTGTTATTGTCAATACCTTTTCCCCACTTTTGATAATATTTTTTCCCCACCTGTTTTCAAAAAAAATTTAATTATCATTATTTAACTGATTTGAGTCATTCTTGGAATCATATGTTAAAGCTTTTATAGCACCCTCCCTTTGCTTCATCCTATAACTTTCACCTTTGATAACTACAAAATGACAGTGATGTACAAATCTATCTAAAATCGCTGTCGCTAAAACTGGATCATAAAATATCCTCGGCCACTCTTCAAATACTTTGTTTGTGGTTATTATTATCGATCCTCTCTCATACCTCTTTGATATTATCTCATAAAAATCATCTACACTGCTTTGATTAAATTTCCTTAAGCCCAGCTCATCTATTATTAACAAATCCACATTAACATAGTTTTTTAGCTTTTGTTGATACGAATTATCCGCTCTTGAAATATACAACTCTTCTAACATCTCATTTGCTGTGGTAAACAAAACTCTATATCCAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 7 351757-353159 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 351757 29 100.0 36 ............................. CTTTTTCTTTTTCAAAGACCTTGCACACAAAAAATC 351822 29 100.0 37 ............................. TGTGATATACCTTCACGTCTTCCTCGTATAAGTCATA 351888 29 100.0 37 ............................. AATTCACATGCGAATAGAGGTCCATAGTGATTGAGAT 351954 29 100.0 37 ............................. GAGACAAAATCAGCTTACAAATTCCCTCATCATGAGG 352020 29 100.0 38 ............................. AGCATCGATATTGCTTCTTTGAGCTGCTCAAATACCGA 352087 29 100.0 36 ............................. ATAGCTGCTCAAATACACTACGTGGGTATGTCGTAA 352152 29 100.0 36 ............................. TTCTTTTAGCTCTTCAAAAATTTCTAATGTGTTCAT 352217 29 100.0 37 ............................. AGTGTTCATGATGCTATCAAAGCTTTAGCCGAGTCAA 352283 29 100.0 36 ............................. AAAAATCATAGGTGGGTTGAGAAAGCTCCAATTGTA 352348 29 100.0 36 ............................. CACATAAGTGTTAGTTGGAAAAGCGTCGGCATAGGA 352413 29 100.0 36 ............................. CTGGTTTTCTTTTCTTTATGTGTAATCATATCCTGC 352478 29 100.0 36 ............................. TAAGTAGTGGACTTGCTTTATATTTGCTTATGGCAG 352543 29 100.0 36 ............................. TTTACTATGCATGAAAACAGATTTATATTTGAACAA 352608 29 100.0 36 ............................. GATATCATGATTTTGCAAAAGATTGTTGCAAGGATT 352673 29 100.0 33 ............................. GCTAATGCTGCTGCTGCATGTATACCATTGCGA 352735 29 100.0 37 ............................. GGGCAAAGTAGTCAAACTTGCTGTAATGCTTTAGAAG 352801 29 100.0 37 ............................. ATTTTGAAATGGGCACTTACTAATTTGCAAGTTGAAA 352867 29 100.0 37 ............................. GCTGCAGCTGCATAGAGCAATAAACGCAAAACAGCTT 352933 29 100.0 36 ............................. CTGTGCGGTGCGGCTGTGTTGATATGAGTGTTGAGG 352998 29 100.0 38 ............................. TGCTTTTATTCTTCTGTTTTGCTTCAAAAGCTGGTACA 353065 29 100.0 38 ............................. CATAGAAAGGCGGACTTTTTATTACTGGAAGGATGAAG 353132 28 72.4 0 ..................-.C..TCCTGT | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 98.7 37 GTCTTATCTGAACTATGAGGGATGTAAAC # Left flank : TGTTAAAACCATGTACACCTTTGAATTTGCTATCTTTTGTTTTACCTTTTGGACATATCTTCTTACATTCGAGTAGCTTCCTTCAAAACCAAATTCCGCTTTCAAGTCTTGATGTATTTTCTTTGCTGAAAGTCCTTTATTAACCTTTACCTCAATGAACTCCCTGTAATTATCTAATACAGAACCTTTTGATTTTCTCTCGACTTCTCCTTTCTGTTCAATGTCATGGATTACTTTTCTAACAGTTTTTCTATCCACGTCTAACAATCTTGCTATTTGACTTTTGTTGTATCCCCGTTTGAAAAGTGTGTAGATTGTTGTGTGCATTGCAACCCCCAACATTTTCTTGTTATCTTCTCCTTCTGTAGTTTTCCCATACTTTCCATTCTACACTACAGAAGGCTTCTTTTTAAGTGGCAGGTGGGGAATTTTTAGTGTCATTTCTGATGATTTTATTTTATCATTAACATGCTTCGCTGACGGTTACGACGTTTTGAAGG # Right flank : TAATGAACGAAAATGAGTGAAAATGAAGAGAAATGAGATTTGAAGAGATAAGGTACCTCCTGGTAAAATACAGAATGTAAGTTGTACAACTTACGACAAAACACAACAAAGGAGGTACCCTCTTTGAAGTATACACAAAATGAAAAGATATTACAAGTAACAGAGAGAACTTTAGTTGTAGGAGTAGATATAGCAAAGGAAAGGCATGTAGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGGAAAGAAGGTATGGAGAAATTTTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGACAACATGATAGTAGGGATAGAGCCTACAGGGCATTACTGGCTGTGCTTTGAGCAGTATCTGAGAGAGAATGGCATAAAAGTGGTTTTAGTGAATCCTTTTCACGTGAAGAGGAGCAAGGAGCTTGATGATAATACGCAAACTAAGAGCGATATAAAGGATCCGAAGAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 8 356504-357986 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 356504 29 100.0 37 ............................. TCAACTTTTCGGTTTCTCTTTCAGCTTGTTTGACTGC 356570 29 100.0 38 ............................. ATTGGCAAAATAATTTGAAAAATATTATCAAAATAATA 356637 29 100.0 36 ............................. TTATAAAAAGTAGGAGGGTTTAGAATGGCAGTCTTT 356702 29 100.0 35 ............................. TTGAATGAATTTAGCGGTATTGCTGTAGCGACTAT 356766 29 100.0 37 ............................. AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG 356832 29 100.0 37 ............................. AAGAAAGATAAAAAAGAAATGAAAGTTTGGACACTTG 356898 29 100.0 37 ............................. AGTGCAAGTTTAAGGTTTTGCAAAGATGCTATTAAAC 356964 29 100.0 37 ............................. AGTTACATTTTTTACGTCAGATGTTTTTTTAGTAATA 357030 29 100.0 36 ............................. ATTTTTTTGCACGTGATGTTAGGACTTTATACAGGA 357095 29 100.0 37 ............................. CTGTAACCACCATTGAAATATTTATAATGTGCTAAAG 357161 29 100.0 39 ............................. CTGAACACAGCTAAATCCTGATGTTGTGTTTTTCAAGTA 357229 29 100.0 36 ............................. GCAAAGCTCAGATTAGAAACTATCTTATCAATCCAC 357294 29 100.0 36 ............................. TGGGGAAGAAGAAGAAAAAGAAAAAGAAGAAGAAAA 357359 29 100.0 37 ............................. CAAACAACACAATGTCATTGCGCCACATGTAATAGGT 357425 29 100.0 36 ............................. TGAAAACAAGAAAGATTTTAATATCAAGCCTCTGGA 357490 29 100.0 37 ............................. TGACTTCTGCGACTTGGGCAAGCGGATTCATCGGGAA 357556 29 100.0 39 ............................. GGGTTTGACGAATTCCAAAACGCCCACAATACAAGAGAA 357624 29 100.0 35 ............................. CCTCACAGAGTACCCCCCCTCAACAGACCCTTCTA 357688 29 100.0 36 ............................. ATAATGCCAGTCTGTTGGGTTAGTGAGAGCATTTGC 357753 29 100.0 38 ............................. CTCTCGATAAAGCTCAATCCAGTCCTCAAGCCTCAGTC 357820 29 100.0 38 ............................. TGTTTTGAATCGGCTTCGATTAAAGCATTTGCTTTAAG 357887 29 100.0 39 ............................. ATTTCCAATGTTGCACATATAGGCAAATATCCGCTGCTA 357955 29 89.7 0 ...................T.....C..T | TT,T [357976,357979] ========== ====== ====== ====== ============================= ======================================= ================== 23 29 99.6 37 GTCTTATCTGAACTATGAGGGATGTAAAC # Left flank : CGAGTAGCAAAGCGCCCCTTTTGGTAGGAGTTCACATCTTAAACAATGTATAGAGAGTAACAAGTGAAGAAAGAAGGATAAAATGATTCTTTATAAAAAGTAAGTAGATTGGAAAATGTGAGCGGGTGGTCAGAGTACATCCCCATACGGGCGAAGACCCTGCATACGAGCATAACTGACGTCCACGCCATGGTAGATGGGACGAGGGAATTGAGGGCAAGTGAGAAAAGACCCTGAGAGACATGAGAGGGTAAACGCCATGGTTATTGTGGATAAATACCCGCCGTAATATGGTAGAATAACAAGATAAATACAAGATGGAGGCCAATTCTAAGTTGGGCATGGTAGAATAAAGCAATAATAACAATATCAAGAACAAAATTGTTTGTTTCGATAACGAAATTTAAAGAAACCGTGAGATATTTTGAGAAAATCAAAGGTATATTGAGAGAGGGATGTAAACAAAAAATTGCAAGGTTCTTTGGAACAAATATTGATGA # Right flank : TACCTTTTCCCCACTTTTGATAATATTTTTTCCCCATCTGTTTTCAAAAAAATTTAATTATCATTATTTAACTGATTTGACTCATTCTTGGAATCATATGTTAAAGCTTTTATAGCACCCTCCCTTTGCTTCATCCTATAACTTTCACCTTTGATAACCACAAAATGACAGTGATGTACAAATCTATCTAAAATTGCTGTCGCTAAAACTGGATCATAAAATATCCTCGGCCACTCTTCAAATACCTTGTTTGTGGTTATTATTATCGATCCTCTCTCATATCTCTTTGATATTATCTCATAAAAATCATCTACACTGCTTTGATTGAATTTCCTTAAGCCCAGCTCATCTATTATTAACAAATCCACATTAACCCTCCATGCTTAGGGAAGCACAACCATTGATGAAAATAGACTTAAGAAAAGGTTGCAAATAATAAAATTTTTGTTAAACTAAAGTTAACAGGGCAAAGGTTGATTTTATTGTTGATGGATATAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 9 539731-541402 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 539731 29 100.0 38 ............................. TTGCATAACTAGTGGGATCATTAATCGGCTCTATAATA 539798 29 100.0 36 ............................. GGCAATGTGGTCCAAGGTAGAAAGGCGGAAGCTGGG 539863 29 100.0 37 ............................. GTTTTAAAACTGTTAGTGCTTCTTCAATGTCTTTTAA 539929 29 100.0 35 ............................. CATGCCCAAAGAATTTATAAAGACATCAAAGAACA 539993 29 100.0 37 ............................. CTTTGCCCCGCTACTGTAGTCCACGTGGGTGTTGCCT 540059 29 100.0 36 ............................. TCAACAAGTATTACATAGCCAGCTTCTCTTATTTCT 540124 29 100.0 36 ............................. TCTATGATATAAACTCCATCTTCTTTAAGTCTCCAT 540189 29 100.0 37 ............................. TTTGGCCGATGGTGTAGCAACTTGGGCGGAGTTGGTG 540255 29 100.0 38 ............................. AAGAAGAGATAAAAGATTAAGCAGTAAGAACTCTTGTT 540322 29 100.0 39 ............................. GAAGCAAGGGAAAATATAAGGCGTTCTTGGGAATACATG 540390 29 100.0 36 ............................. TATTGACAATGTGCTAAAAGCTGTGCTGGATGCTTT 540455 29 100.0 37 ............................. GAAGCAGTTAAAGTTTTACAAATGGCTTTATAGAGAG 540521 29 100.0 36 ............................. ATTTTTTCAGCCATTCTCATTTTCAATCCCTCCTCC 540586 29 100.0 36 ............................. GACTGGTATTAGTGACAATGACTATATTGGTAGTTC 540651 29 100.0 37 ............................. GTTCTTGTCACAAATTGGACTGAGTTTGTAAATACTT 540717 29 100.0 35 ............................. AAGAGTCTATAAAATCAGATTTTCCAAACACTCCA 540781 29 100.0 36 ............................. TCTGACATGATTATTAATTACTCATGGTACGCTAAA 540846 29 100.0 40 ............................. ATCGGTTGGGCAATTTTAGGTTTGACGACAGTTGCAACTT 540915 29 100.0 36 ............................. ATGACGCCCTGTGCGTGAAGAATTAACTCTGTGCGG 540980 29 100.0 37 ............................. TATGGTTATTGGGCTTGGGTATGTTTTGTTGTAAGTA 541046 29 100.0 37 ............................. GTGCAATTTGATAAGCTTTCATGTTTTGCTCTGGGTT 541112 29 100.0 36 ............................. GTCTAACACGTCTGCAACAGAACAGAGCTGAAACGC 541177 29 100.0 36 ............................. TGCTAAATACTGCTGTGCCAAGCTTTTGCAGCCTTC 541242 29 96.6 38 ..................A.......... TCTGGAGGAGCTCGTCCCTCACAAGATCGTATGCCTGG 541309 29 100.0 36 ............................. AAGGGGGTGTTGGAAAAACTACTATTGCACTTGCAC 541374 29 93.1 0 ..T......A................... | ========== ====== ====== ====== ============================= ======================================== ================== 26 29 99.6 37 GTCTTATCTGAACTATGAGGGATGTAAAC # Left flank : CGAGTAGCAAAGCGCCCCTTTTGGTAGGAGTTCACATCTTAAACAATGTATAGAGAGTAACAAGTGAAGAAAGAAGGATAAAATGATTCTTTATAAAAAGTAAGTAGATTGGAAAATGTGAGCGGGTGGTCAGAGTACATCCCCATACGGGCGAAGACCCTGCATACGAGCATAACTGACGTCCACGCCATGGTAGATGGGACGAGGGAATTGAGGGCAAGTGAGAAAAGACCCTGAGAGACATGAGAGGGTAAACGCCATGGTTATTGTGGATAAATACCCGCCGTAATATGGTAGAATAACAAGATAAATACAAGATGGAGGCCAATTCTAAGTTGGGCATGGTAGAATAAAGCAATAATAACAATATCAAGAACAAAATTGTTTGTTTCGATAACGAAATTTAAAGAAACCGTGAGATATTTTGAGAAAATCAAAGGTATATTGAGAGAGGGATGTAAACATTGTTTGGGTCCTCCGATTTAGAGCCGATTGAGCCG # Right flank : CGTAGCGAACAGCTGTTAATGATAAAATAAAATCATCAGAAATGACATCAAAAATTCCCCACCTGCTACTTAATGTGAAGCCTTATGTAATAGTATAGAATAAAAAATTAGGTATATAGGAATTTTTATACTTTTTGCAAAGGAACTTTTGATTGAAGGAATCAAGGGCAATGGTATCAAACTCTCTAACAAGCAGTTTAGTGAAGTTTATGAAGCATATAAACAATTAGCAAAGCAGATGGGATTTGAAAATGTACCTGAAATATAGGTAATTGAGTCAGGTGGATTTTTGAATGCCTTTGCTATGCGGTTTATTGGAAGAGATTTTGTAGTTGTTTATTCTGGTATTCTGGAGCTTGCATATAAGGGAAGTCTTGATGAAGTAAAGTTCATACTTGCACATGAACTTGGGCATCTTAAAGCAAACCATCTTAAGCATAGGCTGATACAATTTGGTTTAATGTTACCTTTTTTAGGTCAAGCATGTTTGAGAGCTTGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 10 2513322-2519967 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2513322 29 100.0 36 ............................. TAAAGTTATTAATCCTCTTTCAGCCCACTTGTCGTA 2513387 29 100.0 38 ............................. TTGTTCCATTTCTTTGACAATCCGCTTGAATTCTTTTT 2513454 29 100.0 36 ............................. GAAGGAGCTTATACAATACAGCGAGGATATCTTAGC 2513519 29 100.0 36 ............................. CAAGGGCAAAGATTGCAATACCCAGACAGGGAAAGA 2513584 29 100.0 36 ............................. GAACTGAAGAGTTCCCTTTTGTTTTTGATGAAGCAA 2513649 29 100.0 36 ............................. TCTTGAATCTGAGATTGTGATAGTAACAAATCAGGA 2513714 29 100.0 36 ............................. AAGTAATGATAAATGTTGTCTTTAAGCACCTTTAAC 2513779 29 100.0 37 ............................. GAGATTGCAGAACTTAAAGCAATGATGACAAAGCAAA 2513845 29 100.0 36 ............................. AGACGGAGGTTGTATCCTGTCCGTCGGATACCCTTC 2513910 29 100.0 36 ............................. CAACGCCCTTCCTCACATGCCTTATAATATCTTTTA 2513975 29 100.0 36 ............................. TTTGATTTGATGTTGAAATAGTTGAACATTTTTAAG 2514040 29 100.0 36 ............................. TGCAGAGCAGCAACTAAGTTTTGATTTTCAAGAAAA 2514105 29 100.0 36 ............................. CTGCTGCTGCTCCATCCTCGAATGTTGTAATTGCAA 2514170 29 100.0 37 ............................. TTTCTTTGCTGACTAATAATTTGTATTTACTTGAAGT 2514236 29 100.0 35 ............................. TATGCAGCCTCTTGCATAGCTGCATCCATCAACTT 2514300 29 100.0 37 ............................. GAATTACAAACTCTATTGCTTTTGAAGGAACTTACGA 2514366 29 100.0 35 ............................. TTCCATTTCTTTGACAATCCGCTTGAATCCTTTTT 2514430 29 100.0 36 ............................. TTCAACAAGCATTTCAATAATTAATTCATTCACGGC 2514495 29 100.0 36 ............................. TCGCTGTGTAATGCGTATCTCAAAGCATCCATGCAG 2514560 29 100.0 36 ............................. GTAGATTGGATAATCAATGAAGGTGTGGAATATCCG 2514625 29 100.0 38 ............................. CAAAACTGCAATTGACACACTTAATGACATTGCAAAAA 2514692 29 100.0 39 ............................. CAGCAGTGAATAAATCTCCGCCTGCTCTTTATCATCCTG 2514760 29 100.0 37 ............................. AGGTAAAGCTGTCTTCACCAAGATATTGCTCGATAAT 2514826 29 100.0 38 ............................. TTGATGAGAAAGTGCATGTGGTTAGTACACTACCAGAG 2514893 29 100.0 36 ............................. TAAGTTGCGAGGAACGTTCGTCTGCAGGGTATATGA 2514958 29 100.0 36 ............................. CTGCTACCGAAATCGCCAAGTTTTGCTGTTGCAGCT 2515023 29 100.0 36 ............................. ACCAGAGTACATTGAGTTTATCAAGAAGACATACAC 2515088 29 100.0 36 ............................. CTGGCTAAATTGAGCATGTTAGATAGCAATATCTAC 2515153 29 100.0 38 ............................. CCTTCGGGCTGCGGAACGCTAAGCTTGCTTCTTGCCGA 2515220 29 100.0 36 ............................. ATCAGAGAACTACATATAGAGAAATCGACCTTTTAT 2515285 29 100.0 38 ............................. GTGTGTTGGCATTGAAATGAACTGGGAAGATTACAGAA 2515352 29 100.0 36 ............................. GAACGAAGAAAAAATTGAAATATCTTTCTTGCGTGA 2515417 29 100.0 38 ............................. CCCAGCACCGGGCTGCCCAGAAAGCTAAGATGTGAGGG 2515484 29 100.0 38 ............................. CCACTGCACCGTTTACTTGGGTATCGAACAATTTAAAT 2515551 29 100.0 36 ............................. ACTCCACATGACTATCATCCCACGAAACAAAACACG 2515616 29 100.0 37 ............................. TGTGCCGTCTGGCATCGCATATACACATATAAGATCA 2515682 29 100.0 39 ............................. GGATAGTAGTCACACAAGAGCTTGGGCGACAGTTTGAAC 2515750 29 100.0 37 ............................. AAAAGTGAAGCTGTAGCGTTTTTGATGAAACATTTTA 2515816 29 100.0 35 ............................. TTTGGAACATGATAAAGAGCATCATTACAACAACA 2515880 29 100.0 38 ............................. CGATGATAACGTTCAGCAAGAAGCAGAAGGAGTTTGCA 2515947 29 100.0 36 ............................. TGACCCAAGCAGAGTAACTACCCCCATTCATCTTAT 2516012 29 100.0 36 ............................. ATATTTCAATATGTCCTGTTCCGTCCAAAATCCCAG 2516077 29 100.0 35 ............................. TGGTAATGCTGAAGAGTTTTTAAACAAATCACTCA 2516141 29 100.0 36 ............................. GTATACAACGAGGACTGAAACATATTATAAAGAAGA 2516206 29 100.0 36 ............................. CTATCCTGTGGAGTCGAGCTTTGGCTTGTTCGTAAT 2516271 29 100.0 37 ............................. TTTCCTTGAGCTTTTGAAAGAGTTCTTTTTTGCTTTC 2516337 29 100.0 36 ............................. CCATGATTTTCTTTGCTATCTCTTCTTTCTTTTGTA 2516402 29 100.0 37 ............................. TTAGTGAATATTACCAAGCAATACTTATAACAAAGTA 2516468 29 100.0 36 ............................. GTTAAGTGTTCAACAAATAATTTACAAAACGTTAGA 2516533 29 100.0 35 ............................. CTTGCATTGATTTGAAAATACCCAGAAAAATCCAA 2516597 29 100.0 35 ............................. TACTTTTGTAGCGTTAAAACTAACCATCAAGTTTT 2516661 29 100.0 37 ............................. CAACCTTGAGATAGTTTTTCATCTCGCTAAGAGTTAC 2516727 29 100.0 37 ............................. CAAATAGGGAACTCTGGGATACTCTTGCTACTTCAAT 2516793 29 100.0 38 ............................. CTAAAGCTAAAAGCATTTGTGAATATTTAACCAAATCT 2516860 29 100.0 35 ............................. TAATTTTGAACTGGCACAAAAGGTTAAGCACATTA 2516924 29 100.0 36 ............................. CGGCACAGCGTATGTTGTCAAAGAGTATTATCACGA 2516989 29 100.0 36 ............................. AATCCATAGTCAGCAAGCTGTGTTATTGTTCTTGTT 2517054 29 100.0 37 ............................. AATCAGAGAACTACATATAGAGAAATCGACCTTTTAT 2517120 29 100.0 38 ............................. CCAGCGGTATGTATCCAAGCACATCTTGGGTCTGTGGT 2517187 29 100.0 36 ............................. AGCAAGATAAAATCTGAATAAATAATTACTACGATA 2517252 29 100.0 37 ............................. ATATGAGGCTTGTGGTTGATATCGCTAAGCGTTATAA 2517318 29 100.0 36 ............................. CAATAGCTGGTTATCAATATACAGTTGGTGGTGTAA 2517383 29 100.0 36 ............................. TTGCTCTTTTTTCTTTCTCTCTATCTCTTCAAGTTT 2517448 29 100.0 37 ............................. TGATGCCAGCTAATATGATGCCGTTGGCAACAATGAA 2517514 29 100.0 35 ............................. GCGCCGTGCTTGCTATTGTGTCCCAAGTGTTTTGC 2517578 29 100.0 36 ............................. GGTCTGCTTTTATTCCGGCGTTGCCCAAGATAGCCA 2517643 29 100.0 36 ............................. CGTCGGTAATCTGTATGCCTAGTTGCTTCAACATTT 2517708 29 100.0 37 ............................. CGAGGCATTAGCCGCACTTGCCAGCACGTCCGCAATG 2517774 29 100.0 36 ............................. TGGTTGTCCATTATCCTTGGTGCCAGTATCACCCAT 2517839 29 100.0 38 ............................. CAGCATACCGGACATAGCCTCGGCGCCAAAAATCGTAG 2517906 29 100.0 36 ............................. TAAAAGGAGTGATTACTTTGGATTTGAACTATGAAC 2517971 29 100.0 36 ............................. ACTATTGACAAGGTCAGAGAAATAGCGAATTACTTT 2518036 29 100.0 34 ............................. TATGCCCCGATATAAAGGTGAGCCTACAAGTATG 2518099 29 100.0 35 ............................. GCAGTTTACGGTAGGTATGGCGGGCTTCGAAGGCG 2518163 29 100.0 37 ............................. CAACATATTCCCTACCGTTGTAAACAACCCTATCATC 2518229 29 100.0 37 ............................. CATACCAGCAAGGTATTTGACAGGACAACTAATTTCA 2518295 29 100.0 38 ............................. CTCTGAACTTGCGTTGTCGTCACCAGCTGGCTGCCCGC 2518362 29 100.0 35 ............................. CTTGAAAGAGAATTAAACAAAACAATAGACTACAA 2518426 29 100.0 35 ............................. GATAAAGGCAATGAATGCAATGCTTGGTGGAAAAG 2518490 29 100.0 39 ............................. TGTCGTCCTTGAAAGGTAACCAAGACTCTCGATATAAAT 2518558 29 100.0 36 ............................. TCTCACCTCAGGGTCTCTGGGCACTTGCTGCAAGTT 2518623 29 100.0 38 ............................. TAATACGCAAGAGTGTTTATAAGCTTTATGACAGCTAT 2518690 29 100.0 36 ............................. TTGTAGATGCAGAAAATAAAAAAGTATATCTGCAAA 2518755 29 100.0 37 ............................. AACCGTTTATGCCGCGAAAGCCCTTGACTTGGTGGAA 2518821 29 100.0 37 ............................. CACGGGTCAAATCTTAAGTTTTACAGATACAATATAT 2518887 29 100.0 36 ............................. TTTCACATCACTACCCATGAATTCGAAATCAAACTT 2518952 29 100.0 38 ............................. GGCAATATTATGCAAGCTGTTGCGACCATTGCAATGCT 2519019 29 100.0 34 ............................. TTGCCTCCTCCAACGTCACCGGCTCCACCAGCGG 2519082 29 100.0 36 ............................. CTGTGCCCGGATATACTCAAAGCCTCTGCTGTACCC 2519147 29 100.0 37 ............................. GAAGAATGGCAAAAGGACAAAAAGTAGTAGGATATGA 2519213 29 100.0 37 ............................. TAACTGCCCATATAGTGCCAAATATTGCTAATCCTAT 2519279 29 100.0 38 ............................. CTGAAAGAGAAGGGTGGCGAAGGGCGGCTGTGTATAAC 2519346 29 100.0 37 ............................. TGCGAAATAAATATGTCTCTGACGAGACATTGTCAAC 2519412 29 100.0 36 ............................. CAATACTAAAGGAAACTGCCTTTTGAACGTAGTAAT 2519477 29 100.0 38 ............................. TTGGTGATGTTAGTTGATGGTAAAGAATCTAAAAATAA 2519544 29 100.0 37 ............................. TATTTAGGGGTGGTGGCAAGTATTTCCCACTTGAGCA 2519610 29 100.0 37 ............................. TTGTAACAGGGCTCACAGATTTATATGCTGTGAGGAT 2519676 29 100.0 36 ............................. CAAGGAATAGTGTAAGTTGCCGATTCGAGAACCTGA 2519741 29 100.0 37 ............................. TCTTTGAGCCGTGATGGTTTACGTATAAAACTTTCTT 2519807 29 100.0 37 ............................. TGATAGATAGCTTAAAAATTAATGATAGCTTAAAATT 2519873 29 100.0 37 ............................. GCAGGATAGAAAAGAAAAAGAGTTATATGTACCAGAA 2519939 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 102 29 100.0 37 GTTTACATCCCTCATAGTTCAGATAAGAC # Left flank : GCAGGCAGTGTTGTTAAAACCATGTACACTTTTGAATTTGCTATCTTTTGTTTTACCTTTTGGACATATCTTCTTACATTCGAGTAGCTTCCTTCAAAACCAAATTCCGCTTTCAAGTCTTGATGTATTTTCTTTGCTGAAAGTCCTTTATTAACCTTTACCTCAATGAACTCCCTGTAATTATCTAATACAGAACCTTTTGATTTTCTCTCGACTTCTCCTTTCTGTTCAATGTCATGGATTACTTTTCTAACAGTTTTTCTATCCACGTCTAACAATCTTGCTATTTGACTTTTGTTGTATCCCCGTTTGAAAAGTGTGTAGATTGTTGTGTGCATTGCAACCCCCAACATTTTCTTGTTATCTTCTCCTTCTGTAGTTTTCCCATACTTTCCATTCTACACTACAGAAGGCTTCTTTTTAAGTGGCAGGTGGGGAATTTTTAGTGTCATTTCTGATGATTTTATTTTATCATTAACAATCAATGCAGTTTGGAGCAG # Right flank : CAGCTTTTTGGAACGACTAATCCAGATAGCCCTTATCATGTTTACATCCCTCTCTCAATATACCTTTGATTTTCTCAAAATATCTCACGGTTTCTTTAAATTTCGTTATCGAAACAAACAATTTTGTTCTTGATATTGTTATTATTGCTTTATTCTACCATGCCCAACTTAGAATTGGCCTCCATCTTGTATTTATCTTGTTATTCTACCATATTACGGCGGGTATTTATCCACAATAACCATGGCGTTTACCCTCTCATGTCTCTCAGGGTCTTTTCTCACTTGCCCTCAATTCCCTCGTCCCATCTACCATGGCGTGGACGTCAGTTATGCTCGTATGCAGGGTCTTCGCCCGTATGGGGATGTACTCTGACCACCCGCTCACATTTTCCAATCTACTTACTTTTTATAAAGAATCATTTTATCCTTCTTTCTTCACTTGTTACTCTCTATACATTGTTTAAGATGTGAACTCCTACCAAAAGGGGCGCTTTGCTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACATCCCTCATAGTTCAGATAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 11 2524602-2521996 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2524601 29 96.6 36 ..................A.......... TTTTTTATATCTGTATGTTGTTGGTAATAATCATCA 2524536 29 96.6 38 ..................A.......... TATATACCGTATGAACTGAGAAAAGCAATAGAAGAAAC 2524469 29 96.6 36 ..................A.......... TGCATTCAATATATCTCTTTTCTGCTTTTCATATAT 2524404 29 96.6 36 ..................A.......... TTTTTCTCAAGAAATTTTGCTGTGTCTCTAAATAAC 2524339 29 96.6 37 ..................A.......... GCACAAGTTTATAGAATAATCAAAGGAAATAGCAAAG 2524273 29 100.0 36 ............................. CCATATTGATTTATCACAATAGCCTTTTCTAAATAA 2524208 29 100.0 36 ............................. GTATCCAAATTGTGATATTCTACCCTGAATGACCAG 2524143 29 100.0 37 ............................. GGTTTTAACAAGGTTGGCTTCTCACCAGTTCCCGGTA 2524077 29 100.0 37 ............................. TAAAAATGTACAAGCTGCCGACTTTGTATCGCTCGGT 2524011 29 100.0 37 ............................. TATAGTTGCTCAGCAATAGCTGAGCTTATTTTTTTTG 2523945 29 100.0 37 ............................. GTTTTAAATGTGTAATTAGAAAAGCCAAAACTGGCAC 2523879 29 100.0 36 ............................. GGTCCAAGTATACGCTTTCGCAGGTAGAAGCTTCTA 2523814 29 100.0 37 ............................. GTCTCTCGTGTTGCACTATCGCATAAGGCAAATCGTA 2523748 29 100.0 36 ............................. AGGTAAAATATGCAACCCAGCAGCGGCAACACCAGC 2523683 29 100.0 36 ............................. ACATTGTAAACATACAGCGTCAAGTTGCACGTTGCA 2523618 29 100.0 38 ............................. TCATCAACCTTCTTAGTGCTGTGCCACTCTCAGCTAAT 2523551 29 100.0 37 ............................. TCGGATTATGTTTAATTTCCCAATAATCGCTGACCTT 2523485 29 100.0 37 ............................. CAGCTACCACTAAGGGGGTGCCGAATTTGTCCAGGGC 2523419 29 100.0 37 ............................. GAAGCAGTGGAGGTCGGGAGCTGCAAGGATTTTCATG 2523353 29 100.0 38 ............................. CCTGGGCGATAACATCAAGGGGAATGCCGCGTACGCAG 2523286 29 100.0 38 ............................. TTTATCAGGGTGAGCATCGTCTGCCCCGCTTCCGCGCC 2523219 29 100.0 37 ............................. GCGGTAACTTTGGGGCCGCCCAGTAGACAGCTTCCAG 2523153 29 100.0 37 ............................. TTTCGGCCTCTACGCTTCCGCCAGGGTCTTGACCCGC 2523087 29 100.0 38 ............................. GCGCATTACGAAAGCTCGCTTGTTTCACGGCCTCACGA 2523020 29 100.0 37 ............................. AGCTCATGTGAACACACGATGAGCTTCATCGCTTCGT 2522954 29 100.0 36 ............................. TTAAAAGTAGCCGACCATTGTATGGATGCTTTGCGA 2522889 29 100.0 38 ............................. ACTCTACAAAGGCGACACACTTATTACTGAAGGAGTTG 2522822 29 100.0 39 ............................. AAGATGCGGTCGGCTAAGGTTAATGGCAAGCCCATCTCG 2522754 29 100.0 38 ............................. ACTAAACTACTATTATGTAACCGCTACCCTCCTTTCTG 2522687 29 100.0 38 ............................. CAGCCAGTGCCCGAGGGACATGTAGCCCAGAGGTGATG 2522620 29 100.0 36 ............................. CAGGGCAAAAAGTACTTATTGAACATGCAATTAGCC 2522555 29 100.0 38 ............................. AAACTCATCAATTACCTGCTGGTCAACCTTGTTTGGCA 2522488 29 100.0 36 ............................. ATGTCATTATTCATTACCTGCCTGTTCTGGGTTCTG 2522423 29 100.0 37 ............................. GAAGGGGAATTAGAACGCTTACAACGATACAATGCTA 2522357 29 100.0 37 ............................. GTTGTGCTCACCGAAAATGGTGATATCAAAATCTATG 2522291 29 100.0 38 ............................. CAACTTTTGTCTTTCGAGTTTGTTGTTGACGACGACGG 2522224 29 100.0 38 ............................. ATTGCGACCTAATCGGTCCTTAAAGCCTGTAATGTTTA 2522157 29 100.0 38 ............................. TTATCAACGCTTTTTCTTTTGTTGCCGTGTCTGCGTTA 2522090 29 100.0 38 ............................. TGATGACCAACATAACAGCTTTTGGTTCAATGTTGATA 2522023 28 72.4 0 ...................C-..TCCTGT | ========== ====== ====== ====== ============================= ======================================= ================== 40 29 98.9 37 GTCTTATCTGAACTATGAGGGATGTAAAC # Left flank : TTATCTTCCTATGAGGGAGTGATGCAAAATATTTGTAATAGTTACATACGACGTTAATGAAAAACGTGTGAATAAAGTTCGAAAAATTTTGAAAAAGTACCTCACTTGGGTACAAAACTCTGTATTTGAGGGTGAAATAACATATGGCAAGCTTGAAAAATGCAAACGGGAACTTTTTTCTGTGATAGAAAAGGATGAGGATTCAGTGTATTTTTACGAGATGGAGTATAAAATTGTATGCAGCAAGAAGATACTTGGACAGGAGAAGAACTATGATTCTGTGATACTGTAAGTATTGCAAGAAACAACCAATTTGCAGCAAACCTAAAAAAGTAACAAGCTGAGCAACTAGCTTGTCAATTCTGCAAAAGAAGTCGATTTAGTATTTTATTCCAACAACCTATCACCCCTTTGCTGCAAATAATATTGATTGCAAAGTAATATGGGATAAGGTATAATTGTAGGTAGTAACTGAGTTACAAGGTTTTTTATAAAAGTGG # Right flank : AATGAACGAAAATGAGTGAAAATGAAGAGAAATGAGATTTGAAGAGATAAGGTACCTCCTGGTAAAATACAGAATGTAAGTTGTACAACTTACGACAAAACACAACAAAGGAGGTACCCTCTTTGAAGTATACACAAAATGAAAAGATATTACAAGTAACAGAGAGAACTTTAGTTGTAGGAGTAGATATAGCAAAGGAAAGGCATGTAGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGGAAAGAAGGTATGGAGAAATTTTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGACAACATGATAGTAGGGATAGAGCCTACAGGGCATTACTGGCTGTGCTTTGAGCAGTATCTGAGAGAGAATGGCATAAAAGTGGTTTTAGTGAATCCTTTTCACGTGAAGAGGAGCAAGGAGCTTGATGATAATACGCAAACTAAGAGCGATATAAAGGATCCGAAGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 12 2533847-2533554 **** Predicted by CRISPRDetect 2.4 *** >NC_009437.1 Caldicellulosiruptor saccharolyticus DSM 8903, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 2533846 26 100.0 39 .......................... ACAATCACTGGGCAATTGAAGATATTAAGTGGGTAAATT 2533781 26 100.0 41 .......................... TTAACCTTTTCAGCTTTTGAGTATTTAGATTCATATTCAAC 2533714 26 100.0 40 .......................... TTAACCCTTCAAGTCCGCCTCGCCTCGATATCGACCTGTT 2533648 26 88.5 42 T...............C.A....... GATTGATACTATTTTTAGAACTTTCATTGTTTTTATACAGTC 2533580 26 76.9 0 T......G........CT..TG.... | G [2533566] ========== ====== ====== ====== ========================== ========================================== ================== 5 26 93.1 41 GTATCTGAACTATGAGGGGTGTAAAC # Left flank : TGGTATGTATTTCCTTCCTTTCTTGGGCTTCCATTAAATGCAACCACCTTCATCAATGTTCACCTCACAAGGTTTTTTAAATATTGTTGCTTAAGAATGAGGATAGACTTTTGAGGAGCTTTTGTCAAGACATAGCTTTATACTTTGCATGCTGGTGCTTTTGTTGGGATAGTCTTTTTAGAGGTTTTTGTAAAGTTTTTTGTAAAGTAAAATAGGAAATTTTTATATGGAGTGTTGAATGAAAAATAAACAGCTTGCATTGTGAGGGATGGTCAAAGGTTTAAAAGGCTTCATAACCAGTTTTATCCTTTTTGCAGCAAACCTATAAATTTAAGCTCAGCCTAAAAAAGACTTTTCTCTCAATGGATAAAGCGTATTTTTCAAAATATCCTAAAAACTTAACTCCCACCTTGCTGCAAAATACTCCTCTTGAAGAGACTTATGAAATAAGCTATAATGAAAGCAACATCAATTTCTTCCGCCAACTTTTAAAAAGAATT # Right flank : AAATCAAATTTTCTTAGTCTTCTTCTATAACGTTTCTTCTAAGTTAGTATTTCAATAATCTTTTTTATCACGTAAATACAACTTTAAAAATTTCTTATTTTGAGCTTGGATAGTTTTGATCATATTCTTTGTTCTCCTTTAAAAATTTTATTTGAAAAAGAAGGATTTTTACAGTTAATGTCGAAATATAATAAACAATACAGTTTAACGCAAGAATTTGTTAAAAAAGGAGAGATTGTTTGAGATGAGAGCAAAATTTATATTTGAAGTACACAATGGGTTTAACGAAACCAAGGAACTCCCAGTTTATTATAGAACCTTATTTATGGCTTTTTTAAAAAAAGCACTATCATCATACAATGAGGAGTATTTCAAAAGACTTTATTGGTGGGAGGATAAAAAGAATAAGTGGCAAAAGCCGTTTGTTTATGCGGTAAATTTGCCCAACATGAATTTTTCAGACGATAAAGTGCTGTTCAGAGGAGATATAGTTTTAAACC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTGAACTATGAGGGGTGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //