Array 1 48203-47587 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBE01000023.1 Pseudonocardia oroxyli strain CGMCC 4.3143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 48202 37 100.0 35 ..................................... GGAGTCGCTCCACAGTGTCGATGCTGAACGGCTTG 48130 37 100.0 35 ..................................... GTACCGACGTGGTAGCCCTCGTGGCGGACGATCTC 48058 37 100.0 40 ..................................... CGACGAATGACGCGAACAGCATTCGGCGGGACTTCCTGCC 47981 37 100.0 36 ..................................... CCGAGCTGCCAGCTCTCGAACTGGATGAGTCCGGCC 47908 37 100.0 31 ..................................... GCAACTGCCCGGTCGGTGCCGTAGTAGTCCA 47840 37 100.0 39 ..................................... CGTAGGTGACCTCCAGGTACTGAGTGGGCTCGGGCTCGC 47764 37 89.2 33 ...G...C.....A........G.............. GCCAGACGACCGCGCTTGGTCTCGGGGTGGACC 47694 37 89.2 34 ...G...C..............G...C.......... GGTTCTCCACCACGTGCTGAATCTCCTTGTTGAG 47623 37 91.9 0 ...G...C...................A......... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 96.7 36 GTCACAAGGGATAGCCCGCTCAATAGGGCATAGCAAC # Left flank : GTCCCGCAAGCCGGCTCCGACCCTCGACGAGATCTTCGCCAATGCGAAGGCGGTCGACAGCATCGACGAACTCGCCCAGGACGGGATCTTCGAGGACGACGCCGAGCTCGACGAGTTGCTCGCCGACGTCCACCGGATGCGCCGCTCCAGCGTCGCTGGACGTGCGCCGGATAGTCATAAGCTCCGCTCGAGAGCACCTGCGCTCTCGCAAAATCGGGACGACGCCACCTCCGCAACCGCCGATGGCCTGACATGACGCAACACACATTGTTGACAGCGATCCACAGTCCGCCGCTGGTCAGAACCCTGATGATCAAGCCTGAACAGATCAACTTCTAGAGAGCAGAAACGGCGAGGTGCTCGCAACCTCCGTTTCCGCAGGTCGCGAGCCTGCGGCCCGCCACGCTCACAGCGCCAAAGCTCGGCTCGAGCTTCCCGAGACCACGGTGCTCGCAACGATCTTCATCGGCCCTGGTCAGAGGCCCCGAATTCGAGGTAGG # Right flank : GGAACTTGCACAGTGCCTCGGCCATCGTGTCGCCAACGGTCGCAAGCAACAGCACCGCTCAGTAAACGCGTCGGAGAGCTGGTCCTGTCATCGCGCGGGTCGTGGACCTGTGCACGACACAGCACGCTGCCCCGACCCGCGAATCGCGGGCCGGGGCAGCGCTGGGTGGGTCAGACCTTGTCCGGCGCCACCCACCCCGCCGGGGTCCCCCACGTCCCGACGGGAACTCGGGCGATCGGGCGCGACGGGTCGTTGAGGCCCTGGGTGCTCAGGGCGTACCCGTTGCCCGCGTAGATCGCGGTGTGACCGTAGGGGGCGGCGACGGTGGGCCAGAAGAGCATCGCTCCCACCGGCACGTTCGCGGCGTCGGTCCAGCCGGTGACCAGCCCGGCACGCTGGTAGGCGTAGAAGCGCGGGGCGGCGTTGCCCGCGATCCGCGGCGTCGACCCCGACCCGAAGAGGTAGGAGCCGTAGGTGAAGGCGGCGCACCAGCCGGACCA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAGGGATAGCCCGCTCAATAGGGCATAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 453731-454196 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBE01000002.1 Pseudonocardia oroxyli strain CGMCC 4.3143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================== ================== 453731 27 77.8 35 G..........A.........G.TCC. ACATTCCGCCGTTCGTTGCAACCTGAAGGACCGAG C [453752] 453794 27 74.1 34 .....T..T............G.GCCC TGATCGTCGTCCCTGCGACCGAAAGAGGTGCCTG 453855 27 92.6 36 .....................GC.... ACGTCCGCCGCCCGTACCGACCCGAGAGGACCCGCA 453918 27 100.0 34 ........................... CCCCCCGACGACCCGACAGCCGAAGGAGTGCCCG 453979 27 100.0 37 ........................... CCCCCCGACGACCCCAGCGACCTGAGAGGACCCCGCA 454043 27 100.0 37 ........................... CCGTCCGACGACCCCACGGACCCGAGAGGACCCCGCA 454107 27 100.0 36 ........................... CCCCCCACGACCCCGCCGATCCGAGAGGACCCCGCA 454170 27 92.6 0 ........................CC. | ========== ====== ====== ====== =========================== ===================================== ================== 8 27 92.1 36 ATGCGCAACCGCGCCTGGTGACACGAG # Left flank : CCGATGAGGATCAGCGCGAGCATCTCGACGACACCGAGGACAGCGATCACCCGGGTGGGCTGGGCCCACACCGCCCATCGGGTGACGCTGCACCTCCGTCGAGGTGACTCTGCCACGAGATGCTCTCCCGTCCGGTCAGACTGATGTCGTGATGATCCGAGCGTAGTCATCGGGTCACTCGACCCGGATGCCCCGAACCGGTACCGAATCGAGTTTCTCGACTACTCTGGGTGACACATGCCTCGGAGATCCACTTCCGAGGCGGAGGAACACGCGTTCGTGGGGCGCCGTACCCGTCCGAGTCGGCCGTCGTTGCCAGCTGTACCGGGTGCGACGTCCGCCACTCCTGGGACTGCCGGCGCTCATGTGATCGGGGATGGGCGAGCGTGTGTTACGGCGGGAAGGAGGCAGGTGTGTGCCGCGGCCTCATCGAACCCTCTCTCGCCTTGCGTCGTGTACTGCGACGACAGCGTCGAATCCCCGGTGCGAGAGGAGACGTC # Right flank : GCGTTCCGCCGGTACGACACACCGCAGGCCCACGCCCCCGCTCCCGAACCCGGGCGGCGTCGACGGCCCGCCGCACGCCTCGTCCCACCACCCGCACGGGTGGCTCCGGACGCCCACACCGGCGGATTCCCTACCCACGGCACACCGGCCGGCGCCGTGCGCCGACCGTCCGGCGAGACGTATGCCTAGACTCTCGGAGACTGATCGGTCACTTTCCGTATCGATCGGGTGACCCGGCACCGCCGGGTTGTTCGCCGGAGACCGCGTCGGGGGAGCAGTGCCGGAAGCTGAGTCCAGACCGGGTGCGAGCGTGTTCCGCGTCCCCGAGTTCCGCGCCCTGTGGGCGGCGGAGCTCGTGTCGATCTGCGGGGACCAGCTCGCCCGCGTCGCCTTCTCCGTCCTCGTCTACGGGCGCACCGGCTCGGCCGCCTGGGCCGCGGTCGTCTACGCGCTGACCTTCCTGCCCGCCCTGCTCGGCGGGGTGCTCCTCGGCTGGGTCG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCGCAACCGCGCCTGGTGACACGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 31756-33125 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBE01000020.1 Pseudonocardia oroxyli strain CGMCC 4.3143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 31756 28 100.0 33 ............................ CCCGGCTTCGCGGAGGACCTCGGCGGTGGCGTC 31817 28 100.0 33 ............................ CACCTTCGGGACCACCCCGACGGGCTGGACCAA 31878 28 100.0 33 ............................ GAACTGATCGACGAGCACGGCAAAGCTCTCCTG 31939 28 100.0 33 ............................ CCGCCACTGCAGCACCCGCAGCTTGTCGAACCC 32000 28 100.0 33 ............................ CCGGCGCATCACCGCCCCGGACTTCTCGACGTG 32061 28 100.0 33 ............................ CGAGCCGCGGTCCACGTCGAGGCCGACACCGAC 32122 28 100.0 33 ............................ CGACACGCAGGACGAGGTCACCGCGCCCGGGTC 32183 28 100.0 33 ............................ CAAGAAGATCATCATGGTGTTTCTCGCGGGGTG 32244 28 100.0 33 ............................ CGAGCCGCCGGGTCCGGCGGCGGTGAGCACCTG 32305 28 100.0 33 ............................ CGGCCTGCTCGGAGGCGAACGAGCCTCGGGTTG 32366 28 100.0 34 ............................ CCCGTACAGGTAGTCGCGCTGGTCACGGTCTGTG 32428 28 100.0 33 ............................ CGTGTTGCTGTCCACCTCGACCTGTTCGAGCAC 32489 28 100.0 33 ............................ CTGATCCCCTCCTACGTGCAGTTGGAGTCCCCG 32550 28 100.0 31 ............................ GACCCGCTGGAACGTGTCCGGCGGCAGCATG 32610 28 100.0 33 ............................ CGTGCCGAACGTGACCCGCAGCAGGGAGAGCTG 32671 28 100.0 33 ............................ CTCCATCTGCCCGTAGGCGATGAGGGAGCCGCG 32732 28 100.0 33 ............................ CGTGCCCCCGGTAGCGGGGCTGCCGGTTCCCGC 32793 28 100.0 33 ............................ CCAGACCGGTACCGGCGGAATCTTCCTGTGGGA 32854 28 100.0 33 ............................ CCCCCATGAGCGCCTTCGACCGCCAGAACCGCG 32915 28 100.0 33 ............................ CGTCCTCCAGTACAAGGGCGGCTCCACGTGGAA 32976 28 100.0 33 ............................ CGACCGGACGTTGACGTCGATCACGACGTCGAT 33037 28 100.0 33 ............................ CTCCCGAGCCTGCGAACCTGACCTCCCCGGCGT 33098 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 23 28 100.0 33 GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Left flank : GCCGCTGGCACCTCCTACTCGACCCCGGACGGCTATGTGGAGTCCGACCGCTCCTACGCCGAGCTCGCCGAGTGGATGGATGAGGATACATGACGGTCATCGTCGTGGCGGCCTGTCCGGTCGGACTTCGTGGCCATCTCACGCGATGGCTACTGGAGATCTCGGCAGGCGTTTTCGTCGGACGGGTCTCCTCTCGGGTCCGAGATCTCCTCTGGGAGCGCACCGTCGACATGGTCAAGTCCGGTCGAGCGATCATGGTGTTCGCCGCGAACAACGAACAAGGCCTCGACTTCAAGGTCCACAAACATGAGTGGACGCCGGTCGACATCGACGGCGTAACGCTCATGCTCCGGCCCAATGACACCGAAGGGCCCTCGGACGAGAACGCGCTCAGAACTCAGGGGTGGAGCAGCGCCAGCCGCCGGCGCCGGTTCAGGAAGCACTGAGCAAAGTCGAACTTCGTTCGCCCAGTAGGCTGGCATCCCTGCAGGTCAGTAAGT # Right flank : CCACCCGCGCGGTCACGAAGTACGACCAGGCGCTGTCGTCCCCGCGAGCGCGGGGGTGGTCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTGCGGGGCGTCGTCCCCGCGAGCGCGGGGGTGGTCCCTGCTGTTCATCGACAGACCTCGCTCGCCCGGTGTCGTCCCCGCGAGCGCGGGGGTGGTCCCTGGTTGTCCGACTTCCACGCCACCGGGACCGAGTCGTCCCCGCGAGCGCGGGGGTGGTCCCGCCCCGCCAGCTCGGCTCGAGCGGGGCTACGTGTCGTCCCCGCGAGCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33423-34610 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBE01000020.1 Pseudonocardia oroxyli strain CGMCC 4.3143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 33423 28 100.0 33 ............................ CTGCTGTTCATCGACAGACCTCGCTCGCCCGGT 33484 28 100.0 33 ............................ CTGGTTGTCCGACTTCCACGCCACCGGGACCGA 33545 28 100.0 33 ............................ CGCCCCGCCAGCTCGGCTCGAGCGGGGCTACGT 33606 28 100.0 34 ............................ CTGGTAGCGCAGGTAGTCAGTGAGTGGCCCGTTG 33668 28 100.0 33 ............................ CCTTGCCTACCGCAGCACCGGTCGTGGCGACGT 33729 28 100.0 33 ............................ CGTCCGGCGGGGGATCGCGGAAGGTGTACCCGT 33790 28 100.0 33 ............................ CTCCTCCCGTGAAATCGACCACCCCCATTCCGC 33851 28 100.0 33 ............................ CTCCGGGAACACGAGCACGGTCAACAACCCGGC 33912 28 100.0 33 ............................ CGTCCTGGCCCCGGCGCCCCCGGCCCCGCTCGT 33973 28 100.0 33 ............................ CGCCCCCTCAGCGGCCTTGATGAACGCCTCGCG 34034 28 100.0 33 ............................ CGGATCCCAGCTCGTGCGGTCGATCTCAGGCAT 34095 28 100.0 33 ............................ CATCACGGGCACGCTGACGATCCCCCGCGGGGT 34156 28 100.0 33 ............................ CCCGGGCACCGTCGTCCCGTCCGGGGGAGGCCA 34217 28 100.0 33 ............................ CTACAGCGGCCCGCCGGACCCGACCCGTTGGGG 34278 28 100.0 33 ............................ CACCAGCGGATCCCCGGACCCCGTGGAGGCCCA 34339 28 100.0 33 ............................ CACCGCGGCCAACGTGCTCTCCGGCTCGATCAC 34400 28 100.0 33 ............................ CTGAACTCCGACCTCGTCCGCATCGTCACCCCG 34461 28 100.0 33 ............................ CCGGGTGTCTCCTGCCAGGTCGAGCCCGTTCGC 34522 28 100.0 33 ............................ CTGTGGGAACCGCGCCTACCGCAGTACCGGTGG 34583 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 100.0 33 GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Left flank : CGCGAGCGCGGGGGTGGTCCCGTCCTCCAGTACAAGGGCGGCTCCACGTGGAAGTCGTCCCCGCGAGCGCGGGGGTGGTCCCGACCGGACGTTGACGTCGATCACGACGTCGATGTCGTCCCCGCGAGCGCGGGGGTGGTCCCTCCCGAGCCTGCGAACCTGACCTCCCCGGCGTGTCGTCCCCGCGAGCGCGGGGGTGGTCCCACCCGCGCGGTCACGAAGTACGACCAGGCGCTGTCGTCCCCGCGAGCGCGGGGGTGGTCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTGCGGGGC # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 35573-36268 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBE01000020.1 Pseudonocardia oroxyli strain CGMCC 4.3143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35573 28 100.0 30 ............................ TCTTCGAGTTGGGGGACCCGCCCCCGGAGC 35631 28 100.0 33 ............................ GGCGAAGGCGTCGACTCGACGTCCTCCGAGGGG 35692 28 100.0 33 ............................ CTCCGCGTGATCGTCGAAGATTTTCCGGGACAA 35753 28 100.0 33 ............................ CTGACGAGTGGCTAGCGGTCTGGGGAGACGCTG 35814 28 100.0 33 ............................ CCAGGATCGACCCCGGAGAGTCGCCGGGGGCAA 35875 28 100.0 33 ............................ CTCGAAGAAGATCCGTGCCGTCGTACTGGGCGA 35936 28 100.0 33 ............................ CAGCACCGTGGACCTGCGGGAGTTCCTCACCAC 35997 28 100.0 33 ............................ CGGCGCAGACGCCCGGGGTGACTCCATGAGGAG 36058 28 96.4 33 ........................A... CCCGATGGACACCGGCTGGAACGCCGTCATCTA 36119 28 100.0 33 ............................ CGCGGGCGAGGACGTCGACGTCGAGCTGGACGT 36180 28 100.0 33 ............................ CAGTTCTCCGTGCTCCTGATGTGGGGCACCGTG 36241 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCCCCGCGAGCGCGGGGGTGGTCCCGGGGCGCGGACCCGTCCGTCCGCGACGCGGTA # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCCCCGCGAGCGCGGGGGTGGTCCCACCCGGTTCGTCGGCTACGCGGACGGCTGGCAGGTCGTCCCCGCGAGCGCGGGGGTGGTCCCTCCTCGGAGACCGTGACGATCACAGCGAGCTTGTCGTCCCCGCGAGCGCGGGGGTGGTCCCACCCGCACCGTCAAGTTCACGGGTGCGCTGCCGTCGTCCCCGCGAGCGCGGGGGTGGTCCCAGCCCGCAGGTTCGTTGAAAAAAGGAGGGCCGGTCGTCCCCGCGAGCGCGGGGGTGGTCCCGGGACCACCGGCGGAGCGGCCTTCAACCGCTCGTCGTCCCCGCGAGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGTCCCTACCGCGAGGACGTCGACACGGCTTGCGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 36374-36980 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBE01000020.1 Pseudonocardia oroxyli strain CGMCC 4.3143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================== ================== 36374 28 100.0 34 ............................ CACCCGGTTCGTCGGCTACGCGGACGGCTGGCAG 36436 28 100.0 33 ............................ CTCCTCGGAGACCGTGACGATCACAGCGAGCTT 36497 28 100.0 33 ............................ CACCCGCACCGTCAAGTTCACGGGTGCGCTGCC 36558 28 100.0 33 ............................ CAGCCCGCAGGTTCGTTGAAAAAAGGAGGGCCG 36619 28 100.0 33 ............................ CGGGACCACCGGCGGAGCGGCCTTCAACCGCTC 36680 28 85.7 62 ......................G..GGG GGGGGGGGGGGGGGGGGGGGGGGTGGTCCCTACCGCGAGGACGTCGACACGGCTTGCGACGG 36770 28 100.0 33 ............................ CGAGGCCCGGTTGTGCGACGAGCACCGCGGGTG 36831 28 100.0 33 ............................ CCCCAGCGAGGCGGTCGCAGGGAGGCTGGACCC 36892 28 100.0 33 ............................ CCCGAAGGTGGTCACCTATAACGGTCAGCCCCC 36953 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================== ================== 10 28 98.6 36 GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Left flank : AGTCGTCCCCGCGAGCGCGGGGGTGGTCCCTCGAAGAAGATCCGTGCCGTCGTACTGGGCGAGTCGTCCCCGCGAGCGCGGGGGTGGTCCCAGCACCGTGGACCTGCGGGAGTTCCTCACCACGTCGTCCCCGCGAGCGCGGGGGTGGTCCCGGCGCAGACGCCCGGGGTGACTCCATGAGGAGGTCGTCCCCGCGAGCGCGGGGGTGATCCCCCGATGGACACCGGCTGGAACGCCGTCATCTAGTCGTCCCCGCGAGCGCGGGGGTGGTCCCGCGGGCGAGGACGTCGACGTCGAGCTGGACGTGTCGTCCCCGCGAGCGCGGGGGTGGTCCCAGTTCTCCGTGCTCCTGATGTGGGGCACCGTGGTCGTCCCCGCGAGCGCGGGGGTGGTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCATGCACGGCCGCTACACCGGCAACGGCGCCGGGTCGTCCCCGCGAGCGCGGGGGTGGTCCCTGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 38202-40302 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNBE01000020.1 Pseudonocardia oroxyli strain CGMCC 4.3143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 38202 28 100.0 33 ............................ CGCATCGCCGAATGGGCAGCCGGGAACGCGAAA 38263 28 100.0 33 ............................ CGATCGGGCGGTCGGCCTAGACGGCAGGATGAT 38324 28 100.0 33 ............................ CCCCGACAATGACGTCTCCGGCAGGACCCCGAA 38385 28 100.0 33 ............................ CACGTGCTCCACGTCGGGGGTGACCGCGCCGTG 38446 28 100.0 33 ............................ CTGGACGGCGCTGCACACCGGTGAGGCGCCGGC 38507 28 100.0 33 ............................ CAGCGTCAACGGCGCGATCAACGCGGTGGAGAC 38568 28 100.0 33 ............................ CTGGTTGACCTCCAGCTGTGACAGCCCGTCGTT 38629 28 100.0 33 ............................ CTCGTCGCGGGACTGCTCGACGCCGCGGGCCAT 38690 28 100.0 33 ............................ CCCGAGGACACGGCGTTTGTCGCTGTCGAGCTC 38751 28 100.0 33 ............................ CGGCACGGCCGCGCTCGTGAACGCGTCGACCGG 38812 28 100.0 34 ............................ CGCGCCGGACGAGCGCGGCGACATCACCCATCGG 38874 28 100.0 33 ............................ CCCGGCGTCCTGCCCATCTCGCTCCTCGCACCG 38935 28 100.0 33 ............................ CGAGGGCATCGTCCGGCTGTGGAACGGCATCGC 38996 28 100.0 34 ............................ CGAGGTGCGGGAGGGCTCCCGAAGTGGTGCCAGC 39058 28 100.0 33 ............................ CAAGGAGCTGGTCGCCCAGCAGAAGGCGGCCCC 39119 28 100.0 33 ............................ CGAGCAGCTCGCCGCGCGCGGGCAGGCCCCGGT 39180 28 100.0 33 ............................ CGCGGGGTGTGCACCTCGTGTGGCGAGGTGTGG 39241 28 96.4 33 .G.......................... CATTCGGCACGTCGAGCACGGCGAGTCCGCCCG 39302 28 96.4 33 .........................C.. CGGGCCGAGGGCGCCGCCGGGGGAGACCGCCTC 39363 27 92.9 33 .....-..........T........... CTACTGCATCCAGGGCACCGCCCGCGAGCTGCT 39423 28 96.4 33 ...A........................ CGGTGAGCAGAATCTGCAGGTCAGCGAGCGGTT 39484 28 96.4 33 ........................C... CCGGACCTCGGCGTCGGCGCGGGCCGCGGCCTC 39545 28 100.0 33 ............................ CAGGCTCATCGAGCGGGGCAGCCCGGTCACCCG 39606 28 92.9 33 ....................A.C..... CGGGTTCGAGGTCGACTGGTTCCGGGCCGCCCG 39667 28 92.9 34 ..T.............T........... CTGGGCCTGGCGCATGTCCAGCGCGTTGCTGTCC 39729 28 96.4 33 .......................A.... CTGGACCCTCAACAACGGCACCGGCGAGCGCGA 39790 28 100.0 33 ............................ CGCCAGCGCGGCCAGGGTGAGCACAAGCGCGGT 39851 27 92.9 33 A................-.......... CGGGTACACGATGCCGGACCCGGCGGGCACGTA 39911 28 100.0 33 ............................ CCGGGGCATCCAGGGCTCCGATGCGGGCACCCT 39972 28 96.4 33 ...A........................ CCGTCGGCGACTCGCGGGACAAGACCGCCAACT 40033 27 96.4 33 .................-.......... CTCCATCGTTCGGCGGGTCACCACGGGGTCCTC 40093 28 96.4 33 ...A........................ CGACACGAGCCAGTACGGCACCGGCGCCCGCCA 40154 28 96.4 33 ...................A........ CGATTGTCGGGGTCGAGCAGCCGTGCTTAGGTG 40215 28 96.4 33 ...........................T CAGAGCCGCGGGCAGCCTCGTCGGCTGGTGGTG 40276 27 92.9 0 .......................-.C.. | ========== ====== ====== ====== ============================ ================================== ================== 35 28 98.0 33 GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCC # Right flank : CCTAGCGTGGGGCGATGGTGGTCGACGGACTCCTGCCGTTCCCGCGGCCGGACGAGTGGCCCCGGGCGCACCGACACTTCCCCAACAGACTGGGGCACGGTTTGAGGCACGCTTACGGCTGATCACGGGGTCGGAGGCTGACCATGGCTGATTAGCAAAAGCAGCTCTGACCAGCAGGGAAGACTCTCGGCGAACATGGCTGGCGGTGTCACGGAGGACCCGTCAGGTCGTGGGTTCGAGCCCCACCTGCCCCACAGCGTGTGCTGTTTCTCCAGGTCAGGGCGTTGACTGGTGGCGAGTGCAGCCGTTCTCAAGATCAATGTGCACGGAAACTCTCTTCGTGATGAGCGAGCCATGGGTGCTGACCTGCGAAGATGGCGGATACGAAGATCGCTGGCATGTGCTTGGCCGCTGGACCGCAATCGACGGGCGGCCTCCCAGTTGTGTGGCCGGTGGCCCGGCGCCGGGGGTGTCAGGGGTGACACGTCCGACTGATCGGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGAGCGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGAGCGCGGGGCTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //