Array 1 253356-251736 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRG01000007.1 Neisseria meningitidis 2006087 NM2006087.contig.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 253355 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 253289 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 253223 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 253157 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 253091 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 253025 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 252959 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 252893 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 252827 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 252761 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 252695 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 252629 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 252563 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 252497 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 252431 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 252365 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 252299 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 252233 36 100.0 30 .................................... AAATGACGATGCGGAACGATTCAGGCAGAG 252167 36 100.0 30 .................................... GTGTGCCTCACTGTGCGCATTAAGTTGGTC 252101 36 100.0 30 .................................... AATGACGAGGCTTTGGATTGCGAGGATTTA 252035 36 100.0 30 .................................... TTGAGAGCAATATTTGTTCTCTCAGCATCG 251969 36 100.0 30 .................................... GCATTCTCCAACACTCGCGATACGGTGTTC 251903 36 100.0 30 .................................... TCATCAGACCTTTACTGTTCAGACGAGACA 251837 36 100.0 30 .................................... CAGACGCGGCATCAAATGGGGCATCATCAC 251771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //