Array 1 10176-9718 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ627131.1 Rothia sp. HMSC069C03 Scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 10175 29 100.0 32 ............................. CGGAGCTGGTTGCCTTCGGTGCCGTCGGTGCG 10114 29 100.0 32 ............................. AAAATGACAGGCGAAGCGTTCAACTTCCCCGT 10053 29 100.0 34 ............................. CACCAGGCGCCAAGACGCCCAAGGGCAAGAAGGG 9990 29 100.0 32 ............................. CGTCCGACGCGGGCAAACCAGCGATACCCAGA 9929 29 100.0 32 ............................. GCTAAGAAGCGCGTCCGCAAGTACGAGAAGAA 9868 29 100.0 32 ............................. CGGTCGCGGCGGCAGCCATAGTGAGTGAAGTG 9807 29 100.0 32 ............................. ACGGTCACGGCCAGGGGTAAGCGCAAAGGCCT 9746 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTTCCCCGCGCGAGCGGGGATGAGCCGAGCACCATCATGTGCAGGTAGAGCTTAATGAAGTGTTCCCCGCGCGAGCGGGGATGAGCCTACAGCACAGAGCCCAATGTTTACCGTAGTTTGGTGTTCCCCGCGCGAGCGGGGATGAGCCGGAAGCCCTACAAAACACCCAAACCGAAAGGAAGTGTTCCCCGCGCGAGCGGGGATGAGCCGACATGAAAACCAAGATCGGCTCCGCGCTACTGGTGTTCCCCGCGCGAGCGGGGATGAGCCTGCCCCCCGGAAAACCGGAGGGCAAATTCAATAGTGTTCCCCGCGCGAGCGGGGATGAGCCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCCCCGCGCGAGCGGGGATGAGCCGCCCAGGCGTACTTCTTAGCGTTGCGTTCCTCAGTGTCCCCCGCGCGAGCGGGGATGAGCCGCTAGGCAGGGTGCTGAGGAAGGTCAAGAATCAGTGTTCCCCGCGCGAGCGGGGATGAGCCCCGACACCACTCTCACCCTTCGTCCCTCAGAGTGTGCTCCCCGCGCGAGCGGGGATGAGCCTACGCTGAGTGGTGTGCAGCAGCTGACGGTTCAGTGTTCCCCGCGCAAGCGGGGATGAGCCCTATATCAAGGGCAACAATGAAAGAAACTCAACGTATTCCCCGCACTCGCGAGGCACAGGTAAGGCCCCTCGACCCGCAGCAATAAACTGCAGGTCGAGGGGCCTCCTCATGCATTAGCGTTAGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11720-10714 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ627131.1 Rothia sp. HMSC069C03 Scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11719 29 100.0 32 ............................. CGGCGCACATCTCAAACGTGATTCTCTCCGTA 11658 29 100.0 32 ............................. ACATGAAAACCAAGATCGGCTCCGCGCTACTG 11597 29 100.0 32 ............................. CTTCTCTAGACGCTTAGCGCGTTCTTGTGCCA 11536 29 100.0 32 ............................. CAACGGATTAGACTTCATGACATCGTCGTCAT 11475 29 100.0 32 ............................. CCCGCATCCTTGCCGTCATAGAACTTCTCACG 11414 29 96.6 33 ............................A GGGCGGCGGGGGTGCGCCCTTATATATATGGTG 11352 29 100.0 32 ............................. TCAGGCCGCCCTTATCCTTGGCAGTCGCGCCC 11291 29 100.0 32 ............................. GTGCTGGCCGAGTCATGGATTTCATGAAGGGT 11230 29 100.0 32 ............................. GCATAACAACACGGCAATACCGCCACATTACC 11169 29 100.0 32 ............................. TCATTGCGGGTGCGCTCTTCATGCACACTGTA 11108 29 100.0 32 ............................. GCACCAATACGGCGCATTGAAAGCGATTCTGT 11047 29 100.0 32 ............................. TCAGTAGGAGCCTGAAAGAACAGCGCCCCACC 10986 29 96.6 32 ........T.................... GGTGTGCTGGTCCAGGAGGAAGGAAGGCAGCG 10925 29 100.0 32 ............................. ACGTAGCGGACTTCCTCGCCGCGCTGGCTCCA 10864 29 100.0 32 ............................. TGAAGCTGCCATCTTCACGCTTGTGCGACGTC 10803 29 100.0 32 ............................. AAGCTGCGGGGGCGGTGGCTTGTTATCTGTGG 10742 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : | # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTTCCCCGCGCGAGCGGGGATGAGCCGAGCACCATCATGTGCAGGTAGAGCTTAATGAAGTGTTCCCCGCGCGAGCGGGGATGAGCCTACAGCACAGAGCCCAATGTTTACCGTAGTTTGGTGTTCCCCGCGCGAGCGGGGATGAGCCGGAAGCCCTACAAAACACCCAAACCGAAAGGAAGTGTTCCCCGCGCGAGCGGGGATGAGCCGACATGAAAACCAAGATCGGCTCCGCGCTACTGGTGTTCCCCGCGCGAGCGGGGATGAGCCTGCCCCCCGGAAAACCGGAGGGCAAATTCAATAGTGTTCCCCGCGCGAGCGGGGATGAGCCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13193-13526 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ627134.1 Rothia sp. HMSC069C03 Scaffold59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13193 29 100.0 32 ............................. GGTCAAGACACCGTGCAGCTTGTAGTAACAGA 13254 29 100.0 32 ............................. ACTTGAAACATGATTTTCTCCTGACTGATTTG 13315 29 100.0 32 ............................. GGGGTGAGCTTTCATTGAGGCGTTCGCTGAAA 13376 29 100.0 32 ............................. GATACGGTAAGGCTGTGTAAGACTATCCCCGA 13437 29 96.6 32 ............................T TCAATACCTAAACCCAGGTTTCCACATGTTAA 13498 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CCCACGTGTTCCCCGCGCGAGCGGGGATGAGCCACCCCACCCATCGCGTAGAGAAAGTGCGTGGCAGTGTTCCCCGCGCGAGCGGGGATGAGCCGGCTACATCGAGAACGAAACGCCGATTCGGTTCGTGTTCCCCGCGCGAGCGGGGATGAGCCGAGTTCCTCCTGATGGGGGTATGAGTATTGTCAGTGTTCCCCGCGCGAGCGGGGATGAGCCGGGCGGCGGGGCTTCTCAGAGTTTTCTCTGAGAGTGTTCCCCGCGCGAGCGGGGATGAGCCGGAATTGGTCAAGTATGCCGCAAAGCGGGAAAAGTGTTCCCCGCGCGAGCGGGGATGAGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCCCCGCGCGAGCGGGGATGAGCCGCGGCACCCTCAGCGGGGGAGCGGTACCTCTCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCGCGCGAGCGGGGATGAGCCGCGTGAGACCGGCGCGGGCGACAATATCCTAGAGTGTTCCCCGCGCGAGCGGGGATGAGCCGCAGTACACCTATAACACTTTTGAATCTTCTATGTGTTCCCCGCGCGAGCGGGGATGAGCCGCCAGGAAGTCGATAGCGGTACGTAGATGCGGCGTGTTCCCCGCGCGAGCGGGGATGAGCCGTCGGTTACCGACGCTATCGGTTCCGTATTCAAGTGTTCCCCGCGCGAGCGGGGATGAGCCGACCTGCTAGGCTCGCGATGGAAAACCCTTAGCGTGTTCCCCGCGCGAGCGGGGATGAGCCGTACACGAGCATTTCGCGCGCGGCGGTCTCTCAGTGTTCCCCGCGCGAGCGGGGATGAGCCGGCCACCGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13683-14870 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ627134.1 Rothia sp. HMSC069C03 Scaffold59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13683 29 100.0 32 ............................. CAGTACACCTATAACACTTTTGAATCTTCTAT 13744 29 100.0 32 ............................. CCAGGAAGTCGATAGCGGTACGTAGATGCGGC 13805 29 100.0 32 ............................. TCGGTTACCGACGCTATCGGTTCCGTATTCAA 13866 29 100.0 32 ............................. ACCTGCTAGGCTCGCGATGGAAAACCCTTAGC 13927 29 100.0 32 ............................. TACACGAGCATTTCGCGCGCGGCGGTCTCTCA 13988 29 100.0 32 ............................. GCCACCGAAGCGCCCACCCCCCAGACCCTGCC 14049 29 100.0 32 ............................. GAACCGTCCGCGGCAGAATGAATCGCCAGCAT 14110 29 100.0 32 ............................. TTGCCGCCGCCCGGCGGGTCTATCGGTGTTTC 14171 29 100.0 32 ............................. GCGCGCATCAAGGAAGCAATGAGGAACCTGTG 14232 29 100.0 32 ............................. CCACAGCAAACGACGATTACAGACAAGAGCAC 14293 29 100.0 32 ............................. AAACGCACGAGTGCTACCCGTCGATTGAAACC 14354 29 100.0 32 ............................. CCCGCGCCGTTCTTGATAGCCGCGTGCGGGTG 14415 29 100.0 32 ............................. GAGATTACCGGCTTTGAAATCACCATCGAGGC 14476 29 100.0 32 ............................. GGCGTAACTTTCGCCGTGGAATTTGATTACGA 14537 29 100.0 32 ............................. TTCACAACCCTGAACGGGTAAATTTCCCGACC 14598 29 100.0 32 ............................. TGGAACGCCACGCGGTAATTTCGGGGCGTTAT 14659 29 96.6 32 ...........................G. GTCTACAACCCCTCGTGGGATTCTAGGAAGGG 14720 29 100.0 32 ............................. GAATAATCGTTTTACTTCAAGGTGAGCTTGCC 14781 29 100.0 32 ............................. CACAAGGCTGCTATCGGTCTTGGCTCGCACTC 14842 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : GTACCTCTCCGTGTTCCCCGCGCGAGCGGGGATGAGCCGGGTCAAGACACCGTGCAGCTTGTAGTAACAGAGTGTTCCCCGCGCGAGCGGGGATGAGCCGACTTGAAACATGATTTTCTCCTGACTGATTTGGTGTTCCCCGCGCGAGCGGGGATGAGCCGGGGGTGAGCTTTCATTGAGGCGTTCGCTGAAAGTGTTCCCCGCGCGAGCGGGGATGAGCCGGATACGGTAAGGCTGTGTAAGACTATCCCCGAGTGTTCCCCGCGCGAGCGGGGATGAGCCTTCAATACCTAAACCCAGGTTTCCACATGTTAAGTGTTCCCCGCGCGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCGCGCGAGCGGGGATGAGCCGCGTGAGACCGGCGCGGGCGACAATATCCTAGA # Right flank : AG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14728-15366 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ627141.1 Rothia sp. HMSC069C03 Scaffold96, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14728 29 100.0 32 ............................. CGTTTTCGTCACCAGCGAGTTTTCACCTTATC 14789 29 100.0 32 ............................. TTTACTATTACCGCACAGTACAGCCCCAGCCC 14850 29 100.0 32 ............................. GATTATTCCTACACCACGACTGAGATTTGGCA 14911 29 100.0 32 ............................. AAGGTACCCGCCGCCACCATCGCAGCAGCAGT 14972 29 100.0 32 ............................. TATTCGATCTATTTGAAAGAGAGAACTTCATG 15033 29 100.0 32 ............................. TCACCTTGTACATATCCTGCTTCTTCGCCTTC 15094 29 100.0 32 ............................. GAACCCACCCGACAGGCCATACACCCACCCCC 15155 29 100.0 32 ............................. CCAGATACACCCACACCCCCGCCACCCTCCAT 15216 29 100.0 32 ............................. CATCAAAGCCTTTGACCAAGCACAGCAGGCAC 15277 29 100.0 32 ............................. ATGACGCGCGATGCAACAAGCTAGAAGCCACC 15338 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTATTCCCCGTATGCACGGGGATGAGCCG # Left flank : CTGGGCTTAACCGGTCCATTCTGGATGCCGCTTTTGGTACGCTACGCCGTCAGCTGGAGTATAAGGCCAGCTGGTACGGCTCGCAGGTACAGATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGGACTCCATGTGCGTGTCTTTGAGTGCGCAGCCTGCGGTGCGCGGATTGATCGTGACGTGAACGCGGCACGAAATATTCGCGCGGAGGCTGTACGGATGTATGAGGCGCAACTCGCCCCCGGCACGGGGGAGAGTCTAAACGGACGCGGAGCTACTGACTCTGATGCTGCCGGTTCGGTGGTATTGGGGGATGTGGCGTTGGATGTGTCAAGGCCCGCCGCTTCTGGCGGCGGGTCACCGTAGGCGAGTAATCGTCTACTCATCCCCTTTATATGTGTATACGTGTGGAAACTGAATATTTTTTGGTCTTTGGCTGGGTATCGTGCCTTGTGGCTAAGT # Right flank : GTTAGGCGTCACAATGAGTGATTTTAGCACCACGTATTTCCCGTATGCACGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATTCCCCGTATGCACGGGGATGAGCCGAGACTGGTTGCACGTTGCATCGCACCGTGACGGTATTCCCCGTATGCACGGGGATGAGCCGCCTCCTATGGGCTTTCCTCCTGCCTCTCCAATGTATTCCCCGTATGCACGGGGATGAGCCGAGTGCGCCGACGAAGTTTGCGTCTCTGGTGGGGTATTCCCCGTATGCACGGGGATGAGCCGGAATTTTCTGCTGAGTTACCGGCGGATTACACGTATTCCCCGTATGCACGGGGATGAGCCGAGCGCCCCCACCCTCAACCAGCGGCTCACCACGTATTCCCCGTATGCACGGGGATGAGCCTCAGGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTATGCACGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 15526-15920 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ627141.1 Rothia sp. HMSC069C03 Scaffold96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15526 29 100.0 32 ............................. AGACTGGTTGCACGTTGCATCGCACCGTGACG 15587 29 100.0 32 ............................. CCTCCTATGGGCTTTCCTCCTGCCTCTCCAAT 15648 29 100.0 32 ............................. AGTGCGCCGACGAAGTTTGCGTCTCTGGTGGG 15709 29 100.0 32 ............................. GAATTTTCTGCTGAGTTACCGGCGGATTACAC 15770 29 100.0 32 ............................. AGCGCCCCCACCCTCAACCAGCGGCTCACCAC 15831 29 96.6 32 ............................T CAGGCGCACCCATTCTGTGAAGATAACAGTCA 15892 29 72.4 0 ..G.....T.C....G.......A.ATA. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTATTCCCCGTATGCACGGGGATGAGCCG # Left flank : CTTCATGGTATTCCCCGTATGCACGGGGATGAGCCGTCACCTTGTACATATCCTGCTTCTTCGCCTTCGTATTCCCCGTATGCACGGGGATGAGCCGGAACCCACCCGACAGGCCATACACCCACCCCCGTATTCCCCGTATGCACGGGGATGAGCCGCCAGATACACCCACACCCCCGCCACCCTCCATGTATTCCCCGTATGCACGGGGATGAGCCGCATCAAAGCCTTTGACCAAGCACAGCAGGCACGTATTCCCCGTATGCACGGGGATGAGCCGATGACGCGCGATGCAACAAGCTAGAAGCCACCGTATTCCCCGTATGCACGGGGATGAGCCGTTAGGCGTCACAATGAGTGATTTTAGCACCACGTATTTCCCGTATGCACGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : GAGAGGTACTGGGCTGCGCACTCCTCATTCGGTGTGTTTGCAGAAAGGAACTGGCGTGCGCCCAATCGCCTGCCTTCCAGGCGTTCTCTCCACCCCACCAAACCCGCACCTCCTGCCCCTCGATGTCACCCCTCGTAAAAACCCCCGTTAAAAACACAGTCGGGGCCGTCTCGCACGCAGGCTCGAAAAGTGCGAGAATGGAACGAAAAGAAAACTACGAAAGAAGATACTTTCATGCTTATTCTCGTTGTGAACGCCGGTTCTTCCTCCCTGAAGTACCAGGTGCGTGACACCTCCCTGCCCGAGGCAGAGCAGATGCTGACCTCCGGCCTCGTCGAAAACATCGGCACCGACGTGCCCAACCACGAGGTCGCATTCGACATCATGTCCGAGAAGCTTGAGCCCGTCCTGGCAGGCCGTGAGCTGCAGGCAGTCGGCCACCGCGTGGTGCAGGGTGCAGAGAAGTTCACCCACCCCACCCTGCTGACTGAAGAAGTTGT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGTATGCACGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //