Array 1 542-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAM01000081.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2752 NODE_81_length_12426_cov_4.04873, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 541 29 100.0 32 ............................. CTATCCAGAGTGGTGGCGCGGTTATCGCGCGC 480 29 100.0 32 ............................. CGTTCCAGGCTGAATTGATGGATGGGGCAAAT 419 29 100.0 32 ............................. CAATGATTTTAGCGGAAAGGCAATAAGTTTGT 358 29 100.0 32 ............................. AGCAGCGAAACGGGTAAAATGATTATGCAGTT 297 29 100.0 32 ............................. AGTATCCACTTAAACACAATCATTATTCGCTA 236 29 100.0 32 ............................. GGGAAAAAATCATGATCGAGCCTAAATGGCTG 175 29 100.0 32 ............................. ACACCAGCTACCGGCGACGCCTGCAGGCTGCA 114 29 100.0 32 ............................. TTTGCTGATAACGGAGGCCGAGTAGTCACACA 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAGCCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTGCTGATAACGGAGGCCGAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12214-11231 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAM01000083.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2752 NODE_83_length_12255_cov_4.04309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================== ================== 12213 29 100.0 32 ............................. TTGATGTAACCGTCTTGGGGTCTAGCGAGCAG 12152 29 100.0 69 ............................. CGGCCCGTGAGGCTGCAATTAAGGCGGGGATAAACCGCCGTGCCCCTGTGTGGGTTGTGCTACCGCGCC 12054 29 100.0 32 ............................. TTGATTTCATCTATTTTGCACAATCTAAGAAA 11993 29 100.0 32 ............................. TGTTCCGGTTTAATAGCATCCGGCAGCATCTT 11932 29 100.0 33 ............................. GGCTCAACAACAAGTTTCACCTACAATTTTCTG 11870 29 100.0 32 ............................. CCAACGGCAATTATGAGCACAAATTGCTAATT 11809 29 100.0 32 ............................. GCATTGATTTAGCGTTGGGTGTGGATTATTTG 11748 29 100.0 32 ............................. AACGGCCTCAGAGTTTCCCGTCGTCTCTTTTG 11687 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 11626 29 100.0 32 ............................. CACACCCCAGACGGATCGGTGATTGTTGAAAG 11565 29 100.0 32 ............................. GGGCTGTTAGCGCAGCGCATCATGAATCTGTC 11504 29 100.0 32 ............................. TCCCCAGAAACGTTCGCCGAAACGTTCCCGGA 11443 29 100.0 32 ............................. AACGGCCTCAGAGTTTCCCGTCGCCTCTTTTG 11382 29 100.0 32 ............................. TTCAAACTCGATCACGGCGAAACCGTTCACGA 11321 29 100.0 32 ............................. GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA 11260 29 96.6 0 ............T................ | A [11233] ========== ====== ====== ====== ============================= ===================================================================== ================== 16 29 99.8 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGTTGATGTAACCGTCTTGGGGTCTAGCGAGCA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4913-4214 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAM01000036.1 Salmonella enterica subsp. enterica serovar Oranienburg strain BCW_2752 NODE_36_length_49769_cov_3.97658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4912 29 100.0 32 ............................. CGAATTAAACTTGGCAAGGGCGTTCATCTCAA 4851 29 100.0 32 ............................. AGTCAATGACTTCCAAAGATGCCCGGGCGGTT 4790 29 100.0 32 ............................. AAAGAGGTGATTAATATTTCGTTAATAATAGG 4729 29 100.0 32 ............................. CCTGGTCTGGGCTTCAGCTGCTGTCGGGTTAT 4668 29 100.0 32 ............................. GCTTACGAAGTTCTTTACCTGTACTTGGCGCA 4607 29 100.0 32 ............................. AAATCGCGCGGCGATCGACTCAAGGCGGCGAC 4546 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 4485 29 100.0 32 ............................. CTGGGTCTTGGTTTCGACGTTGTAGCGGATTG 4424 29 96.6 32 ......T...................... CGTTCATCGGCAGCGTCACGCAATATGAAGAA 4363 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 4302 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 4241 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCAGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //