Array 1 81536-85047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFR01000009.1 Chromobacterium haemolyticum strain T124 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81536 28 100.0 32 ............................ ACATACTCGGCCGGCAGAAGCGGCAGCATGTC 81596 28 100.0 32 ............................ CGTGTCCTGCGGATCTGCTAATTGACCTGGGC 81656 28 100.0 32 ............................ TTGACCAGCCGGTCAACCGCGGCCATCGATTT 81716 28 100.0 32 ............................ TGCCAGCCGCCTGCAAGAATGGCTTACTTCTG 81776 28 100.0 32 ............................ ATGCGATTGAGGCCGGATAGCCAGGCTGCTGG 81836 28 100.0 32 ............................ GGGTGGAACAGCGCCAGCATGCGATTTTCGTG 81896 28 100.0 32 ............................ CGGCGCGCGCGGTTGCTGGCCGCCTTGGCCGC 81956 28 100.0 32 ............................ AGAAGCAAATGCTCAATATTGACCCAACGGCA 82016 28 100.0 32 ............................ TAGCCGATGGTCCAGACGCCGGCCGGGCATTT 82076 28 100.0 32 ............................ GATCCCACCTTGACTCGATAGGTTCCATAGCG 82136 28 100.0 32 ............................ ATTCGACGGCACAGACGGTGCGCCATCCGAGG 82196 28 100.0 32 ............................ TGCACTTTCTTCCCGTTGTGATATGCACTCTT 82256 28 100.0 32 ............................ TGAGTCAGCCACCGTGGATCCGCATACCCAGC 82316 28 100.0 32 ............................ GTCAAGGATTCCTTGATAGTTCAGCAAGCGCC 82376 28 100.0 32 ............................ AAGATCCTGCGCGACTACGGCGTAGACATTTC 82436 28 100.0 32 ............................ ACCCATCGCCATCTTGGCCTGGACATTTTTCT 82496 28 100.0 32 ............................ AGCCTCGTGAGCTTGTCACTGCGCCGCCAGCC 82556 28 100.0 32 ............................ AGTGGCCGGGCAGATTAGCGCCTGGCCATCGT 82616 28 100.0 32 ............................ ATCAAAGCTAGGTCAAGCCAGAGCGGTACCCT 82676 28 100.0 32 ............................ TTCCAGCGTGACGGTGAAGCCGTCGCAATGGA 82736 28 100.0 32 ............................ TGGAGCTGGAAGCCAACCGCCTTCTATTGCGC 82796 28 100.0 32 ............................ CTCGCCTTGGGCGGGCTGACGGCGGGGGCGAT 82856 28 100.0 32 ............................ ACTGGGAACCCATTTTTGGATTTATGTCTGTG 82916 28 100.0 32 ............................ TGCTCATCCCTGTCCCTCCATCAAGCTTCCGA 82976 28 100.0 32 ............................ AGTCTCTGCGCTGACGCGCGCCTGGCGCAAAC 83036 28 100.0 32 ............................ AGATCTGGCCCGCAACCATTCCCGTTCCTTCC 83096 28 100.0 32 ............................ GAACCCACTCTATCTGGAAGGGTGCGACCGCG 83156 28 100.0 32 ............................ ATCACCCGCAAGCGAAAACAGTTGGGCATTCC 83216 28 100.0 32 ............................ GGCGACGATCGGGTTGGCCGCGAGTACGACAC 83276 28 100.0 32 ............................ TTGCCGCCGCTGACGCTGACAACGTGAATGAC 83336 28 100.0 32 ............................ AGCCAGTCGCCGAACCGCTCGCACGGCAGGAT 83396 28 100.0 32 ............................ AACTTGAGCGTGGCCGTCGAGTCCTTGCCGCC 83456 28 100.0 32 ............................ ATCCGGAGCGCAGCCAGGTATGCATTAACCGG 83516 28 100.0 32 ............................ TTCTTGAGTCCTAGTAGACCAAGAAGGCCGGG 83576 28 100.0 32 ............................ CGAGCGGGCGCAGGACTTGGCATATATCGCAA 83636 28 100.0 32 ............................ AGTCCCCGCGACGTTCGACGAACGGATTACGG 83696 28 100.0 32 ............................ TTGAATGCGGCCTTCTCGTGAAGCACATACCC 83756 28 100.0 32 ............................ AAGGATCGAAAGACCTGCCGATGGAGACATTG 83816 28 100.0 32 ............................ GACATCTTCACATCCTTAAAACCAAGTTAGGA 83876 28 100.0 32 ............................ TGGAAGCCGATCATGCCCTTGCAGAGGCTGAG 83936 28 100.0 32 ............................ ATCCCGTCGTCAGGATAGATGGCAATGCCGAG 83996 28 100.0 32 ............................ ATACCCTTCTACGTTGACGCCTGGATTCAAAT 84056 28 100.0 32 ............................ AGCGCCGCATCGGCAATTTGCAAGCGGTGCAA 84116 28 100.0 32 ............................ AGTCCAAGCAAAATGGTCGCAGCCAATACACT 84176 28 100.0 33 ............................ AGCAGGTTGCGCTGGACCCATTCGGAGAACTCA 84237 28 100.0 32 ............................ TTACCCAGCGCATATGATGATGCTTTTGATGG 84297 28 100.0 32 ............................ GAGAAGCGAAGACAAAGCCGGTGCGACAGACA 84357 28 100.0 32 ............................ ACAAATATAGCCCCTTCGCTACGGAGGAGCAG 84417 28 100.0 33 ............................ GATGCCAGTCGCTACGCTTTCAAGCGCAATCTT 84478 28 100.0 32 ............................ ACCCAGTCGCAGTCGTTCATCGCGTAGATCTT 84538 28 100.0 32 ............................ AGGTGATAGGGCCCAGCACCGGAAGGTAACCT 84598 28 100.0 32 ............................ GTTCTGCGTGTTGATGCCGGCGCTTGCCGGCA 84658 28 100.0 32 ............................ GCTGACCAGGTGCGTGACGAAGTCGTCGACCA 84718 28 100.0 33 ............................ ACGACGAGGCCATGAAGCACATCCCGGAAGCAC 84779 28 100.0 32 ............................ TGAGCGAAGAGTGCCAGCACTGCTTGAGTGCG 84839 28 100.0 32 ............................ TGAGCCAACGCCGGGGACGAGCTGCACCCGTA 84899 28 100.0 32 ............................ TTCCAGGTACAGAGGATTTGGCTTGATGCTGT G [84912] 84960 28 100.0 32 ............................ ATGTCGGCGCGAGTCACCGCGGCGAGGTCTAC 85020 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 59 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAGCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAAGTGCCGGTGCCCAGCAGGATGCAGCTGGTGTTGGCGATGGGGATATTCCAATACAACGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAATAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGACGATACCTTCGGGATGGAACTCGATGGCATATTTTGCCATGGGCATGAACGGCATGGCAGCCTGCGCGACAAACCCTTTTTTTCCGCCCCCTGTGGCTGACATTTAAAAACAATGACTTAGCGATGGCATGGAAATTTGGGTCAAAGCCGGAAGAATCGCTGCAAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : AGGCTGATGCGGGTGCGCACGGCTTTGCCAGAGTTCACTGCCGGATAGGCAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10231-11638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFR01000010.1 Chromobacterium haemolyticum strain T124 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10231 28 100.0 32 ............................ TCAGTGGGTTGCCTGGCGGTGCCAGAGTCTCA 10291 28 100.0 32 ............................ AGAAGGAACTGGAGAATGGGAAAATTGAACAG 10351 28 100.0 32 ............................ AGGTGAGCCACAGGTAAATGTCGATGGCCAGG 10411 28 100.0 32 ............................ ATCCGGCCACGTCAGTCCCAGCGCGCAGACAA 10471 28 100.0 32 ............................ AAATTCTGCGCGCTATTTCGCTGTCATGGCCA 10531 28 100.0 32 ............................ CTCGTCCTGGGTGGGCTGACGGCGGGGGCGAT 10591 28 100.0 32 ............................ TTCCAGCGTGACGGTGAAGCCGTCGCAATGGA 10651 28 100.0 32 ............................ TGCTGCTTGCGCCACTCCGGATCTTCACCCTT 10711 28 100.0 32 ............................ GTGTCTGTGGGTTTCCAAAGCTGCTACATGGT 10771 28 100.0 32 ............................ GACACCCGCCATGATCGGCGATTTTTCACGGC 10831 28 100.0 32 ............................ ATCCGAGTCGGCGGCGGCCGGCGTGTGCGCTG 10891 28 100.0 32 ............................ ACCAATCGAATGCATAACCGCGGAAGTTGTGC 10951 28 100.0 32 ............................ GTCCTGATCTTCTTTGTGCTGATGGCAGCACT 11011 28 100.0 32 ............................ ATTGCATTTCCGATGCAGCAGAGCCAACGGCA 11071 28 100.0 32 ............................ AGCAAAACAACCAGTCACACCGTTTACAGTAC 11131 28 100.0 32 ............................ GGCGTCATCCCAGTCCACGCCGTCCGCGATGT 11191 28 100.0 32 ............................ ATATGCGTCCGGGCGGCCGGCTTCATACCACC 11251 28 100.0 32 ............................ CGCAGATACATGACACACGCCTGTTCCCACGT 11311 28 96.4 32 ..............A............. TTCACATGAGCGGCATTGCCAAGGCGTCCGGC 11371 28 96.4 32 ..............A............. ATACAGGTTCAAAACCTGAAAGCCGCGAGCTT 11431 28 96.4 32 ..............A............. GGCAAGGTCCAGCGCGTGGTCACCACGCTGGA 11491 28 92.9 32 .......A......A............. TGCTGGCCGCTACCGGGCGAGTCCCGGCAACC 11551 28 96.4 32 ..............A............. CTGGTAATCCAGGGCGGAGTAATTGGGTAGCG 11611 28 75.0 0 .............CA.......CCCC.C | ========== ====== ====== ====== ============================ ================================ ================== 24 28 98.1 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ATGCCGCCTTACAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAGGCCTGGCAGGTGCGGCGCAAGCAGGCCAAGACCAACCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAGCAGCGCCCGGCCCCGGCCACCCACGGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTGACCCTTTTTTCCAAGCCCCGCCGCCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGTGTGAGAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGACGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : CAACAAAATCAATGCCATATTAGGTATCTAAATTGACATTAATTAGGAAGAAATTATGGATTTGGTACTTGCCAATGTGGCTGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCTGCTGGGCACCCGGTGGTGATCCTGAATCACAACCGCCCGGAAGCCTATCTTGTCCCTGCCGCCCAGTACGAACGCATGATGAGCCTGCTCGAAGACATTGAAGACGCAAAGCTAGTGCTGGAACGTCGGCAGCAGCCCACCGTCAAGATGGACCTGGATGAGCTATAAAATTGTCTTTCAGGTGGAGGTGGAGGCGGCAGCTACATCCGCTGTCCTCATATCCGCTCCCCAACCATCACAACGAGCCCCGCGCCACATCCCCCCTCCCCAAATCCCTCCTCCCGCAATCCTTCCAATCACATTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATCGTGCTAGATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //