Array 1 536936-537798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000001.1 Thermosipho japonicus strain DSM 13481 Ga0415353_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 536936 30 100.0 38 .............................. AATGCAAATCTTTTAAGCTTGCTCCCTATTTTTGCCGC 537004 30 100.0 44 .............................. CATACTTTCTCCTCCTTTTTAGTTTTTGCAGGCTAAACCTGCTA 537078 30 100.0 38 .............................. AACATACTTTCGATTGGTTCTGCGAATTCAACATAATA 537146 30 100.0 35 .............................. TTTCCCAGCTGTACCATATCAGGTGTTTGTAGCTT 537211 30 100.0 45 .............................. CCACAGGGGCGTCTTTTCTAAAATGGTTATCATCTGTCCCGGAGT 537286 30 100.0 38 .............................. TAATCTGGTACAAAAAATGGATCGTATTCGCTCAAAAC 537354 30 100.0 39 .............................. GACGTTGTAAATCTTATTGAAGTCAATTTCAGAATATTC 537423 30 100.0 35 .............................. TATAACAAACGTGGCAATTACGCCACGTCCATTCG 537488 30 100.0 41 .............................. TGTATGCTTCGTACATTATTAAAGCAACGTTGTTATTAAAT 537559 30 100.0 41 .............................. ATATCTTGCTTTTAACGCTCTATTCTTGTAAATTACATCCA 537630 30 100.0 41 .............................. ACTTCTTTGAGCAGCAGCTTTTCTTGCCTCTCTCCTTTCTC 537701 30 100.0 39 .............................. GTACTTCTCTACCGAATTTCTTTGTGATTGCCTCAATAA 537770 29 90.0 0 ........................-...TT | ========== ====== ====== ====== ============================== ============================================= ================== 13 30 99.2 40 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : AAAATTAACTATATTGTTATTATATAGTTAATCAAAAGTAAATTGTAACCATAAGTTAGTTTGTATTATGAACGTTTTTGGAGGAATTAAAAAAACGCATATTATGCAATATAATATCATTTAAAAACAGTTTTAATCACAACATATTTATTTTACTATTTTTTCAAATCTAAAAATAAATTTAATCTTATTCTTGTAATATTAATTAAAAATAATATACATTATTTTTTAACTGATATTTTTGAATATATTAAATTAACACAATAAAAAATATTAACTTTCTTGTAACTAAATTCTTTATACCTCAAAAATAATATGTTTATTTTTTGACTATTGTAACTTTTATGTTAAACCACAAAAATTATCTAACTTTCCAGGAGATCTTTTTATACCCGTTTTTTCGTAAAAGCTCTTAAATAAAAGGTTTTACATTTCGTTTACTTCAGCTCAAAGATTCCGTTACTTGTCGGGTTTGCTTGTATATATTATAATTATTACGG # Right flank : TTCTTAAATTTTGAAAAATGTGAGTTGATAAGATACATTATTTGAATCTTTGACTAAAAAGAAAAATCTATCCACATCTCTCTTCACTCTAAATTCATAATTCATTTTTTAATCTTTTTCACCTAATAACTAACCTTTTTTACACACCTCTAATTCCTTACATACAGCTCACTTGTGTTAACGTCGAGAAAAATAATATTAACAGAATGTTTTCATAAATATTCATCAAAAATGGTAAAATATCTTAGGTTATAGTCGCCTGGAACGTGTCTTAAACGCCGAAAAAAGGCTACATGTTCCAGCGGTTGTTTATTTCAAAAAAACTGAGGAGGTGAACTTTGTGTACGCTATTGTTGAAAGCGGTGGAAAACAGTTTCGTGTTGAACCAGGAAAAGTCTTTTTCACTGAAAGAGTTGTCGGTAAAGGTGAAGGAGAAGAAGTCAAACTTGACAAAGTCCTTATGGTAAAAACAGATGATGGAAAAGTTTTAGTTGGAAAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 672359-673254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000001.1 Thermosipho japonicus strain DSM 13481 Ga0415353_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 672359 30 100.0 36 .............................. GCTTGAATTTCCGCAGTTTCAAATGTAAGTGTCACA 672425 30 100.0 36 .............................. CTACTATGTTTACCTTTGCTACGTATTAGTTCAGGA 672491 30 100.0 39 .............................. ATGTTTTCTTTAATACTTTCAGGTGTTATATATCTCATG 672560 30 100.0 36 .............................. TAAGCTTGCTAGAGAGCTTAGGCAAGCGAGAATTAA 672626 30 100.0 36 .............................. TTTTTATGTTATTCTCGCAAAAGCATACCTTTAATT 672692 30 100.0 36 .............................. ATTCTCATATCTCCAAATGCAACACCAATCTTACCT 672758 30 100.0 37 .............................. TTCCAAAAAGCTTTAAGCACTCTTCCGAGTGCTTTAG 672825 30 100.0 37 .............................. CTTAAGGTGTTAATCCCTAATGTTTCCTCAAGTCGTA 672892 30 100.0 35 .............................. TCAAATAGTCTAACTGTATACCAATCTGTTTTTGC 672957 30 100.0 37 .............................. GTTTGTGAATTTTCATATGTTTCTATAATCTTTTGAA 673024 30 96.7 38 .............................T TAGCGTTGCTCCTCCAGAAAATGGTAAATGCATTATCC 673092 30 96.7 36 .............................T ATTTCACAAGGATGAAATGATAAGAATTCCTACTCC 673158 30 96.7 36 .........................A.... CTATGATAATCTACATCTTTTAATACCATGAGTAAA 673224 30 83.3 0 ...TA........T..............TG | A [673249] ========== ====== ====== ====== ============================== ======================================= ================== 14 30 98.1 37 GTTCGTACCTTACCTTGTAGGAATTGAAAC # Left flank : GCGCACAAGAGCAAAGTGCAAGCACTGAAGAAATGAGTTCAGCTATGGATACTATTAACTCTTCTATACTCTCAATCTCATCAAATCTTGAAGAAGCATCAAACGAACTAATCAAACAAGAAGATTTAATAAAAGAAACATTTGAAACTTCTAAAAAACTTTTCGAACTTTCTGAAAAGCTGCTAAATTCAATAAACAGATTTAAAGTAAAAGATTAAGATAAATCATCATCACACCTCTCCGCCTTGTGCGGAGAGTTTTTTATAACATTCCACGGTTATCCTTTTACAAATTAAATGTACATAAACGAAACAAAATTTTTATAGTAAAATTCAGTCGATGTGTAGTAGTGTAAAAAGTCCTGGAGATCGACTGAAAAAAATAAAAAATTTATGTAACTCCAAAGTATTTTACGTTAATATTGTTTATTATTTATTATGAGTTTTTCAAAAAGGTTGCAAAAAGTAATAATATGTAATATAATTATAACGTAATCTATA # Right flank : GTATAATTAATGCTTATCTTATAAAAAATCTCCTCTTTCTTTAAAAGTGGAGATTTTTATAAATTGTTGTCTAAATTAATTTTTCATACTATAATGTTATAAAATAGGAAAAATGATAATGAATATAAATATTAAAATGGAGGAATTTGGAGGTTTTAAAATGATTAAGAATATAATTTTTGATCTTGGAAGGGTTCTTATTAACTGGGAGCCTGAAAAATATATGAAAAAAGTTTTTGATAAAAAGACCACTACTTTTTTGTTGAAAAAAGTATTTAACACTAATGATTGGAACCTTATGGACAAAGGAGTTATCGATGAAAAAACACTCTGGGAAAATAAATTAAATAAATATCCTGAATATAAAAAAGAAATTGAGCACATGAAAAATAAAGTTTTAGATTTACTTACACCAATTGAAGAAAATAAAAAGCTTCTTTATATACTAAAAGAAAAAGGTTATAATCTATACATCTTATCAAATTTTAGCAAAATTGCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTACCTTACCTTGTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 85673-85103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000003.1 Thermosipho japonicus strain DSM 13481 Ga0415353_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 85672 30 100.0 38 .............................. ATAGAAGTATCACTTTGTCTGTCTGATGAATATCTTGC 85604 30 100.0 36 .............................. CTCCAATTAGCTTTTTCCCCAAGCTTATCAATTATT 85538 30 100.0 38 .............................. TTGCGACTGTAAATTTATTTCAGCTAGTTCGGCTTGTA 85470 30 100.0 35 .............................. TTGTCAAACGTATTGACAATTATTCCATATTTATC 85405 30 100.0 37 .............................. AATGTTATTCCATTTTGTTCTAAAAAATCTAATTTTT 85338 30 100.0 40 .............................. TATATATATCCTGAGGCACAAAAAGGAACAGTAATAGAAC 85268 30 96.7 37 .........................A.... AGTCTTCCATTTTTTCTAACCTTTAGTTGTTTTACTT 85201 30 100.0 39 .............................. TTTTATCTCCTTCGCGCAGTGAACGCGAAGCGAAGGATC 85132 30 90.0 0 ................A..A.........T | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 98.5 38 GTTTGTACCTTACCTTGTAGGAATTGAAAC # Left flank : TCTAATAACACTTTTACCTTTGATTCGTATAAAAAGGGTTAAAATTAAAACAAGTATATGATCAGGATACTTTCTTAGATACATTCTTTTAGATTTGTCAAAGACAAGAATAGGTATTTTATTGAGTAATTTTTGTAGTAAAATAATATTGAGATGAATATTGATGGGCTACATCTCCTTGTTAGGGATTGTTTTTGTTACAAAAATAATTTTAGCAGGTGTAGTCCTTTTCTTATATCCAAATTTAACTTTGCTTTAACCAGGGGCAAGTTTTAATGGATAAATTTTAGAAAAAAGATAAAAAAGAAGAAACAAAATTTTTATAGTTAAATTCAGTCGATGTGCAGTAGTGTAAAAAGTCCTGGAGATCGACTGAAAAAAATAAAAAAACTATGTAACTTCAAAATATTTCATGTTAATATTGTTTATTTTTTGTTATGATTTTTTCAACAAGGTTGCACAAAGTAATAAAATGTAATATAATTACAATGTAATCTATG # Right flank : TCTATTTTACAATCATAGCCAGTTTATGTTCGTAAATTTAGATTTATTTCAAAGAGTTTAAAATTATATATAAATAAAGAACGGGGGACGCTTCATGAATAAAGAGCTAAAGATTAAATTTAAAACTCTCAGTCCTTTGTGGACAGGAAACTATAAAGGAATAACTAATGAAATAAGACCTTCAAGCTTAATTGGCTCTTTAAGGTTTTGGTTGGATGTTGTTTGTTATTTTTCAGGTTTACAAATCAATGATTTGGGGAATTTTGATTCAAAAAATTTTCAAAACTTTATTTTAAAAGAGGGGATTGATTTTGAATCTTTGAATAAAATTTTTTCTGAATTTAAACTGAGCTTATCTTCCAAAATTTTTGGTTGTAATGATTGGAAAGGATGGATTAGGATAAAAAAAATAAAACCAGTCGGGAAATATTGTTTTGGTAACTATTTAAATTTAGATAATAGTTATAGAAACCCTTATTTTTGGGGAACGTTTGAAGTTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 39056-39778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000002.1 Thermosipho japonicus strain DSM 13481 Ga0415353_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 39056 30 100.0 39 .............................. TAAATGACATCCACGATGCCATCGTAATTTTTCATTACT 39125 30 100.0 36 .............................. AGGTAGTCCGTTTCGGGTCTGATCATGTATTCTTTT 39191 30 100.0 43 .............................. TCTTACCATAATCACACCTCCATACCATGTTTTTATTTTTCTG 39264 30 100.0 43 .............................. CTTTAGTAATTCAGACCTCCAACCAGGCCGAGACATAATAGCA 39337 30 100.0 36 .............................. TCTTCTACAGTTCCCATCCCACCCACCAGGTTTTCT 39403 30 100.0 42 .............................. AACATCAACAATGATTAAAATATCTTCAAAGTCATTGTTTTC 39475 30 100.0 37 .............................. ATTCATATTCTGTATCGCCTAACAATACGGTTGGATG 39542 30 96.7 40 .............................A CAAAAAATATGACTCATATTGTTTATCATCTCCTTTCAAA 39612 30 100.0 37 .............................. CACCCGTCCTTAAGTTATTAAACAATCTTTCAATTGC 39679 30 96.7 40 .....A........................ TAGAATTCATAAAATACATTCAGTGGCATTGCATTTAAGT 39749 30 93.3 0 ............G................A | ========== ====== ====== ====== ============================== =========================================== ================== 11 30 98.8 39 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : GGACTTATCTTATACCTTCTATGTTTCTTGCTTTTAGAAAAAAAGAAATAAAAAATAATACTAATTGATAAAAAAATTATTAATTAAAGTAAAATGGCTTTGGTGTTACACCAAAGCCATTTATTAAAATATAATACATCACAAATAAATACATAATTTACTCAATCAACGCACATTTACTATAGGAAATTTAAAATCATTAACTGTAACTAAAATATAATCAAATATTAATAATAAAAATTTACGTTGCTTTATTTTTTCTAGAATGTCGTCTTAATACTTTTGTAACTAATTTCAAAAGAACTCTTTTTTACTAGCTTCTCATTTTTGATATTGTAAAGTTCATGTTAATGAATTAAAATCCTCACAATTTTTAAGTGATGTTTCCAACTATGAATTTAAACAAAAGCTCATAAATACTACATTTAACTTATCGTTCACTTTCACTCAAAGGTTTTGTTACTTTTTCTTGTTATATTTATTTATGAGGATAGTTATAG # Right flank : ATGCATAGTCCAAATTTTTCAAACTATTCTCACTTTTTTCTTTTAAAATATAGTTATGAAAATTTATGTATTGATTCTCATAGAAAAGTTTCATTAAAAATTTCTAATAAAAAGAAAGCTCCATTCTTGTCTAGACAAGAATGGAGCTTTTTCCTTTTTAAATAATTTTTATAATTACCCAGCTAAATACTTTCCACACTTTCAACTGGATAATCAATTTCAGATAATTTTGCTTTTACATTTTCTAGGTTTTCGGTTTCAATTTCAACAGTTTTACTTTCTAATTTAACCTCAAAGTTTTTTTCACCTAGCTCTTCTAATGCTTTAGTTATTCTCATAACACAATGTTTACAAGACATATCTGGTACTTTCAAAATAAATTTACCCATAAAAATCACTCCTTTTTAAAATCTTCCTTTCATGATTAATCCTTTTTTTCTTTCGTACTCTTCTTCTGTTATTTCACCTTTTGCAAGTTTTTCATTTAATATTTTTAAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 313272-313030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000002.1 Thermosipho japonicus strain DSM 13481 Ga0415353_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 313271 31 100.0 43 ............................... AAGTAAATGGGTATACATATGTCGGAGGATTAATAGGTGAAAT 313197 31 100.0 35 ............................... GTATTGCCATTGCTGTGTTAGGTGCTACTACATCG 313131 31 100.0 41 ............................... AAAATCTCCTGCGTAGCCCACAACTACAGCCACTTTCTTGT 313059 30 93.5 0 ........................-.....G | ========== ====== ====== ====== =============================== =========================================== ================== 4 31 98.4 40 GTTTAGAATCTACCTATGAGGAATGAAAACC # Left flank : AAACATATTTTTAAAGGTAAAATTAGATATTTTATTAAGTGTTTTCTATAATCAAATAATATTGAAATAGATATTGTTGGTTATATTTTTCTATTAATGTTTTTTGTGACGAAACTATTTCAAAAATTCTGTCACTTTTCATATTTTAACTTAATATAGTTTTTTTTTAACTTGAAATACTAAAAACGCCGTCAGAAACAATATCTTAACCAAATAGAAGTCTAACATTAATCAGTAAAATTACAACTGTTGTTTCAAATATAAAAGAACGTCTTAACATTATTGTAACCAAATTCGAAAAACTTCTTTTTTACTAATTTCTAATTTTGATGTTTGTAACTTTTGTGTTAACAGACAAAAATCAAACAAATTTTCTGTAGATATTTCCGAAAACAAATTCAAATAAAAGCTCATAGATACTACATTTAACTTACTTTTTACTTCTGTTCGAAGTTTTTGTTACTTTTTCTTGTTATAGTTATTTATGGGATATTTATAGG # Right flank : GTCAATAGCTACATTTAATTGATAAAAAGAGGAGAGTAAAAATACTCTCCTTTTTTGTTTTATAGTCTTATTTCAAAGTAAATAAAGAATTTTTTATTAATTTGATTTTTTTCAAAATAGGGATTTATCATAGAAAAATTGATATTAAATGCCTTTATGCTAAAAAATTCACGTATTGACATCTTCGAATTATCAGGTTAAAATAATCGTGAAAATAATAACGTTATATTTTTCACGAAAACTAGGTGATCGTATGGTTATAAAAATTTGTATGGGAAGTTCTTGTCATTTAAAGGGTTCGTATGAAGTGGTAGAAAAAATCAAAGAGATGAATCTTGAAGGTGTTGAGTTGTATGGTTCCTTATGTTTTGGAAAATGTGCTAATGGAATAAACATTGAGATAGATGGAGTTTTGATTTCTAATGTTACGCCGGATAATGTTAAGGAAAAAATTGAAAAATTCCTAAAAGAAGGGAATTAAAATGGAAAAGTACATTATT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 332391-332696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000002.1 Thermosipho japonicus strain DSM 13481 Ga0415353_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 332391 29 100.0 40 ............................. CCTTCTAAACGAGGCTGTACCTTACATGGTTCAAATTCAT 332460 29 100.0 43 ............................. CGAGTCAATCGACTCCTGGACAAATACTTAATACTGACCCTCC 332532 29 100.0 39 ............................. CGCTTGTTATTTGATTATAAACCCTGGGACTCCTACTAT 332600 29 100.0 39 ............................. CGCTTGTTATTTGATTATAAACCCTGGGACTCCTACTAT 332668 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 5 29 100.0 40 GTTTAGAATCTACCTATGAGGAATGAAAA # Left flank : TTAAATATAATAATGTATTAATGTATAGCAAATCAAAAGTAAATTGTAACTATAAGTTAGTTTGTATTATGAACATTTTTAGAGGAATTAAAAAGACGCATATTATGCAATATAATATCATCAAAAGCAGTTTTAATCATAACATACCTATTTTACTATTTCTTTCAATCTTGAAAATAAATTTAATCTTATTCTTGTAATGTTAATTAAAAACAATATACATTATTTTTTAACTGAGGTTTTTGTGTATATTAAATTAACACAATAAAAAATATTAACTATCTTGTAACTAAATTCCTTATACCTCAAAAATAATATGTTTATTTTTTGACTATTGTAACTTTTATGTTAACACACAAAAATTATCTAACTTTTCAAGGGATCTTTTTATACCCGTCTTTCGTAAGGCCTCTTAAATAAAAGATTTTACATTTCGTTTACTTCAGCTCAAATGTTCCGTTACTTGCCGAGGGTGCTTGTATATATTATAATTATTACGG # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAATTTATTTTTATCGAAACTATTGTAATAAACATTAATAACGTTTAGAATCTACCTATGAGGAATGAAAACCAAGTTGCCTATTGCAGATGTAATAGACGGGCAGTGTTTAGAATCTACCTATGAGGAATGAAAACGCGTATAGGTTTTGAACATATAAGCTGAATTTATCATTCGTTTAGAATCTACCTATGAGGAATGAAAACTCATTCATTGATACATGTAGTGTGAACACTCTGCGAATGTTGTTTAGAATCTACCTATAAGGAATGAAAACATTTCTAATTCAATATCAACATCTTCATGAAACCACAGTTTAGAATCTACCTATGAGGAATGAAAACTAATTATTTTAAATGGAACGGCTGGGTCGTCAACTTCATCCAGTTTAGAATCTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 332839-333213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000002.1 Thermosipho japonicus strain DSM 13481 Ga0415353_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 332839 30 100.0 35 .............................. CAAGTTGCCTATTGCAGATGTAATAGACGGGCAGT 332904 30 100.0 39 .............................. GCGTATAGGTTTTGAACATATAAGCTGAATTTATCATTC 332973 30 100.0 41 .............................. TCATTCATTGATACATGTAGTGTGAACACTCTGCGAATGTT 333044 30 96.7 37 .................A............ ATTTCTAATTCAATATCAACATCTTCATGAAACCACA 333111 30 100.0 42 .............................. TAATTATTTTAAATGGAACGGCTGGGTCGTCAACTTCATCCA 333183 30 90.0 0 ...............G........T....A | T [333206] ========== ====== ====== ====== ============================== ========================================== ================== 6 30 97.8 39 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : CAAATGTTCCGTTACTTGCCGAGGGTGCTTGTATATATTATAATTATTACGGGTTTAGAATCTACCTATGAGGAATGAAAACCTTCTAAACGAGGCTGTACCTTACATGGTTCAAATTCATGTTTAGAATCTACCTATGAGGAATGAAAACGAGTCAATCGACTCCTGGACAAATACTTAATACTGACCCTCCGTTTAGAATCTACCTATGAGGAATGAAAACGCTTGTTATTTGATTATAAACCCTGGGACTCCTACTATGTTTAGAATCTACCTATGAGGAATGAAAACGCTTGTTATTTGATTATAAACCCTGGGACTCCTACTATGTTTAGAATCTACCTATGAGGAATGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAATTTATTTTTATCGAAACTATTGTAATAAACATTAATAAC # Right flank : ATTCTTTTGATAATTCTTATAATTTCATTGGAATTTAATATGCGGAAGATCTTGGATAGATCAAAAGAAGAAAGAAACAACTCTCAAAAGTTAAAACATAAAAACATGTTCTTATAATTCAACATAAAAAAAACACGGCTCGTTTTGAGCCATGTTTTTTGAATGTAATTATTTAAAACTTTATTATTCTTTCACCTTCCTTTACTCGTCCAACTACTTTTCCAGGAAGCTCATCAGTTTCTGAAACATATAATAAACCATATCCCATGTTAAACGTATTAATAGCCTCGTCAAATTCTACATATTTTAAAATCCAATCGATAAATTCCTTTTTTTCTATATTTATTTCGTAGCCTAAATCTCCAAGCAACCTTCTTAATGCCCTAGTAATTCCTCCTCCTGTAACATGAGCCATTGCTTTTATTTTATCAAAATAAGGTGTAATTCCCTTATAAATTCTTGTTCCTTTTAGTATATCAAAAGGCAAATCTTTTATGTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 24865-25586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000008.1 Thermosipho japonicus strain DSM 13481 Ga0415353_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 24865 30 100.0 36 .............................. TTAAAACTTACACGCTTTAGAGAGGCTTTAAGTAAA 24931 30 100.0 38 .............................. GTTTTGTAGTTCTTTTTTTTCGTCACTGTTTATTTGAA 24999 30 100.0 38 .............................. CACCATTCAAATAATATTCCCTCTGCACATTATAAAAT 25067 30 100.0 40 .............................. CTTTTACATCAGAATAAGAAGCTATTTTGGTTCCACTGAT 25137 30 100.0 42 .............................. GACCTTCTTTACTTTTACAAACCCCTCTTCCATACTTAACAC 25209 30 100.0 43 .............................. CTTAATGCTTTCTTCTTATCACCTCCAAAAAACTTATTAGTAA 25282 30 100.0 39 .............................. CTTTTTCAAATTTAAACAACACTATCTTTTCTTCAAAAA 25351 30 100.0 39 .............................. AATCACTTTCCCATGCGTCTTTAATTAATTCTACTTCTT 25420 30 100.0 38 .............................. ACACAGAAACTGCATCGAAGCTTTTACCAGGAAATTTA 25488 30 100.0 39 .............................. AAAAAAATATGCCCGGACCTGCCACCCGGGCAAATTAAA 25557 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =========================================== ================== 11 30 99.7 39 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : CATGTCGAAAGTGCATTCCTTCCATTTTTAACTGATATACAAAAATCATATATAAATCTTGCTTTTATCATGTTTTCTTTTGATTTACATAAACCTATATATCATCTTATTTATCCCGCTGCCAATCCTTGTATCATAAAAACAATTTTTTACCCGATCTCAAACTATCTTGGCTGGACCACTAAATAATATTAGAAAAATTATATTAACCAAATAAAAATTTATTATTAACAATTAAAAATCACAAAAAATATTTTAAGATAAAACGTCTTATTAACACCTTTGTAACCAATTTTGGAAAAACTCTTTTTTACTAGTTTCCTGTTTTTATATTTGTAACTTTTATGTTAACAGATTAAAATTGGACAAATTTTTAGGAGATGTTTCCGAAGATAAAGTTAAATAAGAGCTCATAAATACTATATTTAACTTTTCGTTTACTTCCACTCAAAGGTTTTGTTACTTTTTCTTGTTATATTTATTTATGAGGATAGTTATAG # Right flank : TGCATAATGATGTTTACCATAATAATCTTCATCAACATAAGCGTTTAGACTCTACCGTTGAGATTATTATAGATAAAACATTTATTTTCTTCCCTTTATGAAATTTTATAGCTTAATATTATTTAACAAACAAAAAAAGGAGGGGTAACCTCCTTTTATTTTGTTACTTATTATTTATAACTTAATTTTTTATAGCTACTCGCTTTACCTAAAGTTATAAATTAAATTTAGTTCTTAATTTATCGATTCCTGCAGAAAAGCTAATACTGCCTTTACTAAATATTATTTTTTAAAATATTTTCCTATTTTTACTACCACTCCCTCGTTATATTTTTTCTTTTAAAAATAGCCCTAGAAATTTGCTTTTTCACTTTCTACTTATACTACTTATATCTGACAACCTTTTTTTACTTTCCTACAACATTCTATGTTATACTTTATACCATATTGAAAAACGAAGATTTCAATATTGAAAACAATAAATCACTTTTTAAATCTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 45075-44702 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000008.1 Thermosipho japonicus strain DSM 13481 Ga0415353_08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 45074 30 100.0 39 .............................. ATAAAATAGGTCAAGTATGCTTGGTAAATCATATGGGTA 45005 30 100.0 43 .............................. TTGTGCTACAACGCTTGAAGTTATAAAAAATGTTTTATCTTGT 44932 30 100.0 37 .............................. TAGCCGTGCCGTGGGGTTACTTCTTTATAAAATGTGG 44865 30 100.0 38 .............................. ACTTAAATAACAATATTTTCCCCTCAAAAAGTATTTGC 44797 30 100.0 36 .............................. AACACCTCAAAAAGAAAATCAATGATACAATTTTAA 44731 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =========================================== ================== 6 30 99.5 39 GTTTAGAATCTACCTATGAGGAATGAAAAC # Left flank : GTTAGGCTACACCTCCTTGTTGTTGATGTTTGGTACAAAAATAATTTTAGCAGGTGTAGCCCTTTTTTTATATCCTAATTTAACTTATTTTTTACTTTGGCCAGGGTCTTATCCTATTTGAAGTTGTCTGAAAAATAAAAAATTAACTAAAAGGAAATTTAAAATTAACAATAAAAAAGTGTTGATGTTATTCTAAGAAAGAAAATTTTTTTTAACACATTTTTAACAAAATTCAAAAAAGTGCATTTTTACTAAATCTATAATATGGTATATGTAACGTTTATGTTAATAGACTGAAAATAGACAAATTTTTAGGAGATGTTTTCGAAGATAAAGTTAAATAAGAGCTCATAAATTCTAGATTTAACTTATCGTTTACTTCCGCTCAAAGGTTTTGTTACTTTTTCTTGTTATATTTATTTATGAGGATATTTATA # Right flank : GGTATTATTTGTTGCAAAAAATAAAAATGTTTTATATATTTAAAAAGACTAATTAAAAAAATTATGAGAAATTTTGGATATATTGTATTTTTTTAATTGGAGCAATTAATTGCTCCAATTTTTTATGTCAGATTTTAATGATTTAAATCGTATTATAAGTGTAAAGCAAATTTTAAAGGAGGGATTTTTGTGAGGAAATTTTTCATAGTTCTTTTAATAAGCTTGTTTATTATAATCTCTTTTGGTGAGCAAAACTTTTTAAAAACACCCTCACAAGTTGAATCTTTAGCTAGAGTTCATGCAAATGAAGATGTTAATAAATTTTGGCCATTTTTAGGAGGTTTTGTATTTGGTATTATTGCTCCAATATACAATTACGTAGTTGAGCCTGAAGTACCTGCCGAAAGATTAGTGAAACTAAGAAGTATTATTAAAAACGTAGATGATTATTTGATAGATATTTATGTAAGGGCGTATAAAGATGAGATAAAAAAGATAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 14773-15994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEX010000006.1 Thermosipho japonicus strain DSM 13481 Ga0415353_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 14773 29 100.0 36 ............................. TTTCCAATTGTATGTATAAGATCCATCTGATATATC 14838 29 100.0 36 ............................. TGAGCTAATAACAATTCTTTTTGAATATTCCTTTGA 14903 29 96.6 37 .......G..................... TTTAGCATCGCTTCGTACAAAACTACCTGCGTGTAAA 14969 29 100.0 38 ............................. TTAAGTTCTGCTGTGGAAGAAAATGGTGTTTTAACTAT 15036 29 100.0 37 ............................. CATCATTGGTTGCACCAACCTTTTTGGAAATACAGCA 15102 29 100.0 37 ............................. CAGCCATTTACGTGCTTCCGGTGTTTTATCTTTAATC 15168 29 100.0 38 ............................. CAAATATTGCTCTAAAAACTCAATACTTAACTTTTCAA 15235 29 100.0 38 ............................. CATGGCTTATGCAACTGTCATATGTGATGGAAAATACA 15302 29 100.0 37 ............................. CAAGTCTTCAAAAGACAATACCTTTTCTTCAAGCATT 15368 29 100.0 38 ............................. CATTCACCTTTACCTTCCAAAGAAGGTACTTGATACCT 15435 29 100.0 37 ............................. CTAAATATCTAACGATTAACGGTAAGAGCAGTCGTAT 15501 29 100.0 37 ............................. CTTTAGGTAGTTTATGGATTGTAATATGTCGTTTATC 15567 29 100.0 37 ............................. CTTTAATGGGATTTCTGTAATGTTTTGAGACTGCCCA 15633 29 100.0 38 ............................. CTTAAATTCTTTACTGATTATCAAACATTTGAAAAATT 15700 29 100.0 38 ............................. CCTGTTTTTACTAACGAACCTCCACTACTTCCTACATC 15767 29 100.0 40 ............................. CTCACTTATACCTAACATCTTTAATACCATCATATTCATA 15836 29 100.0 36 ............................. CGTTATTTCAGGGCTCCTCCAACCATACTTCTCATA 15901 29 100.0 36 ............................. CCAAAACGACTGTGATGTTCTGTAATATCTAAGCTT 15966 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ======================================== ================== 19 29 99.6 37 GTTTGTACCTTACCTTGTAGGAATTGAAA # Left flank : TTATAAATTAGAAAAACATCTTTTAGAGGATGAAGTATATGAGCCTCTAATAATGGAGTGGTGATATGTTTGTTATTCTATACTATGATGTTGGTGTAAAAAGAGTTTCAAAAATGCTTAAAGTGTGTAGAAAATATTTGACGTGGGTTCAGAATTCGGTCTTTGAAGGAGAAATAAGTTATTCAAATCTTGAACGTTTAAAAAGCGAAATAGGAAGGATTATAAAAGATGAGGATTCAGTAGTAATATACGTTTTTAATCAAATGTTGTACAGCAAAAGAGAAGTTTTAGGAAAAGATAAAAAAGAAGAAACAAAATTTTTATAGTTAAATTCAGTCGATGTGTAGTAGTGTAAAAGGTCCTGGAGATCGACTGAAAAAAATCAAAAAAATGTGTAACTTTAAAATATTTTACGTTAATATTGTTTATCATTTATTATGATTTTTTCAAAAAGGTTGCAAAAAGTAATAATATGTAATATAATTATAACGTAATCTATG # Right flank : ACAAGAAAAATTGGTAAAAAATAATGGCTCCACAAGGAGCCATTATTCTTAGTTTTATTATTTAATTTTCTTTAAACTTCCAGATTTCCTTCTATTATAATCTTTGCTTTCCCACCTATGAAGACTTTTTCATTTTCAATTTTTCCAAATATTTCCGATTTCCTGTTCATTGATTCACCTTGAATAATTTTGTGTACTTTTTTTTCATCAATTATGTTATTTTTGTATAGATAGTATAACAATGCACCATTTGCTGTACCAGTTGCTGCTTCTTCATTTATTCCATATAATGGTGCAAAATCTCTTGTGTTTGCAAGCGCTTCCCTTTCATCTAAAGTAAATAAGTGAAAACTTACAATGTTGTTTTCTTTTGTGAACTCTTTTATTTTTTCAAGATTTGGTTTTAATTTAAGTAATGTTTCTTTCTTTTTTATTGGAATAAGTAGATCCCATAGTCCAGTATACGAAGCTTGTGGTTTAAAACGTTCATCTAAATCTTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTACCTTACCTTGTAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //