Array 1 44983-46475 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGN01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain N29331 NODE_10_length_170666_cov_3.6358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44983 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45044 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45105 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45166 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 45227 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 45288 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45349 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45410 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45471 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45532 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45593 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45654 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45715 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45776 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45837 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 45898 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45960 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46021 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46082 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46143 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46204 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46265 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46326 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46387 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46448 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62608-64389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXGN01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain N29331 NODE_10_length_170666_cov_3.6358, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62608 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62669 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 62730 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62791 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 62852 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62914 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62975 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 63036 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63097 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63158 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63219 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63280 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63341 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63402 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63463 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63524 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63585 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63646 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63708 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63811 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63872 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63933 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63994 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64055 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64116 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64177 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64238 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64299 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64360 29 96.6 0 A............................ | A [64386] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //