Array 1 1555-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNHU01000014.1 Actinomyces ruminicola strain KPR-7B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1554 29 100.0 32 ............................. TCGGCCAGCGAGGCGAATAGGTTGAGGGTGAG 1493 29 100.0 32 ............................. GGTGCCCCGGAAGGGCGGCACCCTGGCGTCGG 1432 29 96.6 32 ............................G GGCTCGGGCGCGGTCTCCGCTTCGACGGCGGA 1371 29 100.0 32 ............................. AACTTTGGTCGCCACCGAGCCCGGTACAGGTA 1310 29 96.6 32 ............................G CTACGCGCAGGTGATCGACGAGGTGACCGCGC 1249 29 100.0 32 ............................. CCCCAGTCGGGTTGGGGCTGTGCTCGACTGGG 1188 29 100.0 32 ............................. ACCGTGCGGCGGTACTACAACCACCACCTACA 1127 29 100.0 32 ............................. GGCATCAGCCAGTTCATCCCGTCGACCTGGGA 1066 29 96.6 32 ............................T GCGGCGTAGAAATGGTCTAGCAGTTCCCACTC 1005 29 100.0 32 ............................. CTCGGTGAGGTCTTCGTCAACCTGTACTAGTC 944 29 100.0 32 ............................. ACAGCACCAGCGCAGAGCATCCGTGGTGGTGA 883 29 96.6 32 ............................G GGACTGAAGGCCGCGCTCGGCGCGGCGCTTAT 822 29 100.0 32 ............................. GCGTCCTTGTTGACCGTCCCGTCAATCCTAAG 761 29 100.0 32 ............................. TGGGTGGCGGCCTCAACTAGGCGGGCCGTGTC 700 29 96.6 32 ............................G GAACTGAAATGCTTGAGCTGGAGTATGTGTCG 639 29 96.6 31 ............................G GAGCTGGGTGTGCTCGACTGGGTTGGGCAGG 579 29 100.0 32 ............................. CATACGGTCTGCGGATCCCTCCCAGGGGTCGG 518 29 96.6 33 ............................A GCAGGCCGTCGACGCTGCCCTGCTCGAGGTTGC 456 29 96.6 32 ............................G CGGGCGGGCTCACCGACACTCACGCCGTCAAT 395 29 96.6 32 ............................G GGACGTGACGCCCTGATCGCGGCCGCACAGGC 334 29 96.6 32 ............................G TCTGCGGACAAGACCGGCAAGGCGGCCGACAC 273 29 96.6 32 ............................T GGGTTCGATCGTGTGCTGTGGCAGGAGGCTGG 212 29 100.0 32 ............................. CAGGAGGCGATAGTGTCGAACCACTTGCCGGG 151 29 96.6 32 ............................G GTTATAGAGAACAGGTCCAAGGGGATCTACCA 90 29 100.0 30 ............................. AACTGGCGCAGCCACATCGTCGTCACCGCC 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 32 GTCGACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCGGCGCGTAGTCGCCGGAGGGGCGAACTACTCAGAAGAGGATGCGGGCGGATGGTAGTGCTGATTCTTTCGGCTGCGCCCGCATCACTACGGGGCGCCATGACGCGCTGGCTGCTAGAGGTAAGTCCAGGCGTATTCGTCGGGCACCTGTCTGCCCGGGTGCGCGAACAACTGTGGGAACTCGTCAGGGCATACATCGGTGATGGGCGTGCGCTGCTCATCTGGTTCGCGCGCTCCGAGCAGCACTTCGAAATCGCTTCGCTCGGCCACGACCGCGACCCTGTCGATATTGAGGGCTGCATAGTTATGCGTACCCCATACCGGCAGATTGAAGGCGCGACGCCAATCCCCGGCGCCGTGAAGCCCGCCAAGGAATCATGGTCGATTGCTGCTCGACGGCGTCGCTTCCGCAACTCGGCGGAACGGGCACTAGGTCAGCAGTAAAGGAATCGGGTGTAGAGTCTGCTGTCGCGCCGTTGGGATTCCAAGGATCTACAAGT # Right flank : CCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163392-161897 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNHU01000009.1 Actinomyces ruminicola strain KPR-7B, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163391 29 96.6 32 ............................G TAGCCGCATCATTGGAGACCGCGCTGCGATGC 163330 29 100.0 32 ............................. GGCGGTTCGTCGCCGAAGCTTGTGTCGGCGTC 163269 29 96.6 32 ............................G CCCCGCGACCGCGCCTACACCATCGCTTCGGA 163208 29 96.6 32 ............................G CCCCGGAACCATTCGGGCAGCCAGTCGGCCCA 163147 29 100.0 32 ............................. GCGCCCCGGGCCCGGTCGATCGCCAGGTGGCG 163086 29 96.6 32 ............................G TCCTCCGGCTTGGAGGTCTCCATGGTGCCGTC 163025 29 96.6 32 ............................G ACACGGCGGACTATGCGCTGAAATGGGAGCAG 162964 29 93.1 32 ..T.........................G CATGGTCGGGCAGCCGAGCCCGGCCACCTAGC 162903 29 100.0 32 ............................. CCCGTGGCCCTGGTGGCCTCGAATCTTGTCCA 162842 29 96.6 32 ............................G GAGCCAATGATGGAACTGGAGTACACTTCCCG 162781 29 96.6 32 ............................G CTGGCACGTCACCCGCGACGGAAATCTCGTAG 162720 29 96.6 32 ............................A TCCTGCGCTGCGCCGGACTTGCACAGCTCCTG 162659 29 100.0 33 ............................. ACCTCGAAGCGGCACCCCTCATACAGCACCCGC 162597 29 100.0 32 ............................. CCCTTCCAGTGGGTGTCCCAGACACCTGCCCT 162536 29 100.0 32 ............................. CCTTGCCCAGGCCGGGTGCGCCGGGTCGAGGC 162475 29 100.0 32 ............................. GCTTGCGCGGCCTGTGCACAGCCTCCCCGCCG 162414 29 100.0 32 ............................. GACGCGTACACGTTCTGGCGGTCAGAGCCGCA 162353 29 96.6 32 ............................G ACGGCGAGGATGGTCTTGGCCGCGCCGGCGGA 162292 29 96.6 32 ............................T CGTCTAGCGACGGTAACGGTGCCCCGGAAGGG 162231 29 100.0 33 ............................. TCAGCAACCGTGGAGATCGCGCCCTTCACCTTC 162169 29 100.0 32 ............................. AGAGTTTCCTCGCTGGCAGGAGGCCAGCGAGG 162108 29 96.6 32 ............................G GCGCGCCAGACTCCGCGGAATGTTCGCCGGGT 162047 29 100.0 32 ............................. GCACCTTGCCGCGCAGCCGGTTGGACACGCTA 161986 29 96.6 32 ............................G CGGTGGATGCCACGCCGGCCGGGGCCGGGAGA 161925 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.0 32 GTCGACCCCGCGCGAGCGGGGATGATCCC # Left flank : AAGG # Right flank : GGCAATGGCGGCGTGCCGAAGTCGAGCAGCCCGTCATCCCCGCGACTCACCGCCTGCGCGCCGAAAGTAGTGCCGTCGAGTTCACCGGTCTTGTACCACCCGGGTAGAGATGATCCAGGACCGCGAATACCACCCGCGAGAAAGCCCCGAGGCGCTGCGTATCGACACCGCCATGACCGATTCGCAGGACGCCGCCGCTACTATCCGCGCTGCCGTGACGTGCCGTCGCTCCCCGGTGGTGACCACCTTTTCGCCAGTCACGACGACGGCCCCATGCTAGCGCCGACGGCGCGGCGGGGCCAGGCATGACCGACGGCGCGGTTGGCCGCGAATGCCGGATCGCCTGGTGCGGCCACCGCGCAGGCACGACTCCATTGCTTTACCCAGTCCGCTTTGCTCAGTTTTACTCGGTCTGTTCTCCCCAGTCACTCTTGCCCGAACCAGTCCTCCAGTCCATCGGGAGCGCCTACCCATGCGAGTGCATCTGGGAGTTCGTCCGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //