Array 1 205276-206750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECMT010000006.1 Paenibacillus sp. GSMTC-2017 Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 205276 32 100.0 33 ................................ TGATTTTTGTAAACTTTCTCTGTAAACGACGTA 205341 32 100.0 35 ................................ TTGATCTAATGCCATTGGTATAAACCTCCTAACAT 205408 32 100.0 33 ................................ AATTAATCGACCCCTTTTCGTTAAACTGCGCAG 205473 32 100.0 35 ................................ ATGGACTATCCGGAGTTGGTGGCCGAAATGGCGCG 205540 32 100.0 33 ................................ ATCGATACGATGACTATAGCGCGCGATCGGCAC 205605 32 100.0 33 ................................ TACTCTGCAGGATTGACAATCGATGTTAAAGGC 205670 32 100.0 34 ................................ TGCTGCTGTTCCTCTGTCTCTGTCATACTGCCGA 205736 32 100.0 33 ................................ GTCAATATCCTATAATCTCTGTTTCGAATATTA 205801 32 100.0 34 ................................ TAAGCGGTTATCTGCTGCTGAAAAGAAATGGCAA 205867 32 100.0 34 ................................ GCTAATACAGCGACACCTGCTCCGTCACTTGGTG 205933 32 100.0 33 ................................ ATAGCTGCCCATTTGTAGAAGTATAGAATCTGA 205998 32 100.0 34 ................................ TCAAAGCTTCGTTTTGTATACCCAACCACTTTGG 206064 32 96.9 34 ............T................... ATGCTCGTGATATTTGGGTTTGTTCACCCGAAGC 206130 32 100.0 34 ................................ TACGAAATGAAAACGGTAGAGTAGCTTGGCATAT 206196 32 93.8 33 ......T............C............ TTAACATCCTTAAAAATGAAGTTCATAAAGGTC 206261 32 100.0 34 ................................ ATCTGTAGGAAGATGGAATGATGATTTAAGAGTT 206327 32 100.0 33 ................................ TTATCCGGTAAAACGGTATTAACGGTGGTGTAC 206392 32 96.9 33 ......T......................... AAGTCATTAATAATAGCAGTCGTTTTTCTATCC 206457 32 96.9 33 ......T......................... TATTATCTGTGCCATTAATGGGTATCCCATAAG 206522 32 90.6 35 .......T..G....A................ GATGTGTCCGATACGCGAAGCTCGAAGCTGTCTGG 206589 32 93.8 33 ..........G..T.................. TGAGGGTTATAAAAATCTCTGGCTCTCAAGGTA 206654 32 90.6 33 .............T....A...A......... GTCATTGAATCAGATGGATACGTATTCGTTACA 206719 32 78.1 0 .......G.......A..A....AG...G.G. | ========== ====== ====== ====== ================================ =================================== ================== 23 32 97.3 34 GTCACTCCCTATGCGGGAGTGTGGATTGAAAC # Left flank : CACAAGGATCAGCAGGCTCGTCCAGACCATCGAGACCAGCAGGTTCGCAAGGATCAGCAGGCTCTTCGAGACCATCAAGACCTGCAAGTTCTCAAGGTTCAAGCTCACCAACTAATCCTTGGTTGCGATAATTAGCTAAAAAGGATATCAATAACAGCGGCATTTAGGAATGTGAGTTCCTGAGTGCCGCTTTTTTATGATGATAAAAGAGGATGTAGATTATGTAAATTTACAAAACTATAATGAAATCTTATGTTTAGGTACTCTTCAGTATCTTGCATCTGGGATAGAAGTGGCAGTTTGATATTTAGAAGTCGAGTAGATTTATCATGGTGCGAACCATAAGTACACATGAAATCCCTGGGGGATTCGCACCTCAAGCTGGACAAGGAATTTCAGCGTATATAGCGAATAAGTATACTAAATTAACCTCGTGAAATTCGAGGTTCGCAAAAAAGGCACCGAAAACCCTTGCTGTGCAAGGGTTGGAAAGGCTCGCT # Right flank : CTTGGCTTGATGTGACTCCAAGCTTCACCTCATGCGTGAACAATCAGCTCATAGGATTACCAAACCTCCTTCTATTTACAGAATGACCTTTATATCTGGGCTACTTCGTAGTTTCTAAGAAGTTAAAAAAGCAAGGCCACATCGACAGGATGTGGCCTTTTTCTTGTTCAAATGTTGCGGTTTATTGTCACAATCTATCGATAACCATCATTTAGCGATGGAAGATTAGGAGGTATTTTCTTTTTTTGGTCGAATTAGCACGTGGAGAAGGGAAACATTGGGTTATAAAAAAGTTGTCGAGAGGAAGAGGCAATTGAAACGAAAACTAGAATTCCCAGTGAAAGACGAGAATTTTACTACAATCATTTCAAATGTGGGTAGATTTAAAAAACAGCATAGCATTACTATTGTAACGCCTATGTTTGGTGGGGGAACTGAAGCGGGTGCAGTGGATGAAGCAAACCCAATTCGATCTTCATCCGTCCGTGGTAACTTGCGAT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTATGCGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 215233-216904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECMT010000006.1 Paenibacillus sp. GSMTC-2017 Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 215233 32 100.0 34 ................................ TGACGAATGGACAACTATATTTTACAGGGAGGCT 215299 32 100.0 33 ................................ CGGAATTGGCGTTGTGAGCACAATCAAACCCTC 215364 32 100.0 34 ................................ AATATGGACTTATTAGAACGGTAGAAAAAAGGAG 215430 32 100.0 33 ................................ CTTGCTGATCGATCCGCTCGACGATTCCTATAA 215495 32 100.0 34 ................................ GCTTATAATGCCGATTAGCTTACCGATGTTGCTG 215561 32 100.0 34 ................................ TCATTACTGCCTTGATCAGCTGTAAGATTGCTAG 215627 32 100.0 33 ................................ GACAAGGAAGCGTTGCTGGAGTTATTAAACCGA 215692 32 100.0 34 ................................ TCAATACAGTCAAAGGAGACTTAAGCTGTGCTGG 215758 32 100.0 33 ................................ TCGTAATATATCGATTGGTCTCCCACGATAACC 215823 32 100.0 34 ................................ CTATGTACAGGTTGCGCGACAGAACGGGAAGTCG 215889 32 100.0 34 ................................ ACTATCGAACTATATCCACTCTATACATACACTG 215955 32 100.0 34 ................................ TCTTTTTCTTTCTCGATCAGAACCGCACAAGAAG 216021 32 100.0 32 ................................ TGTTCATGACAACATCCTTCACAAATAACAAT 216085 32 100.0 33 ................................ TGTACTGGCACAAGAACCTTTTCAATCTTGATT 216150 32 100.0 34 ................................ TGTTACTGGAATAGTCACATTATTCAAATCGTAA 216216 32 100.0 33 ................................ TAAAAAGAACCACCCTAAAGGGGATGCTGGCTT 216281 32 100.0 34 ................................ AACCTCATTACTCGACCATCGACCACATCATACT 216347 32 100.0 34 ................................ AATGAATGGAACTCTTGCATTTGTGAATCTCAAA 216413 32 100.0 34 ................................ CATAACAAAGCAATTCTATTTTGGATTTGCGCGA 216479 32 96.9 34 .......................A........ GTCACTCGTATGAATTCCTTTGCTCTCTTTCGTA 216545 32 100.0 33 ................................ TTTGATAATATGAGCATAGTAGTCCATAGTAGT 216610 32 100.0 34 ................................ GATAAACTCATATTCCGTACCTTTGTTCTTAACA 216676 32 96.9 34 .........T...................... GTTCTGGTGTTGGACCAGATATAACTATGAACTT 216742 32 96.9 33 .............A.................. TGAGCTACCGTCGCTGTCATCATTTATTATTTC 216807 32 84.4 34 .....A....A.....A....C.A........ TCTATAGGCTTACGCTCTATGAGCAACTATTCAT 216873 32 78.1 0 A...A....TA..C....A...A......... | ========== ====== ====== ====== ================================ ================================== ================== 26 32 98.2 34 GTCACTCCTCGTGTAGGAGTGTGGATTGAAAC # Left flank : ATTAAGTGTTACAATTATGAGAGAACACGATAGTATTAAAAGATGGAGTCATAAGTTAAACCATGTGTCAGATAGGGATAAAGGGGAGGAATTGTTTGGTTATATCAATGAAAATGAGAAAAACGTCCGTACTTTAAATCAATATCGTGTAAAAGGTAAATCTCAGACATCTGAGGAGATCTCATTATTGTCATTAACATTTCAATTGAATCAATTATTGATGTTAATTAATAATCCGATATTTTTCCCGCACATGGCTTATGTAGATATGTTCAATTCTATTCTTGAAGACAAGAAGACTAATAGTGGCGTCGAAACGAAATAAAATCGTGGTGCGAACCTCAAGTGCACATGAAAACCCCGGGGGATTCGCACCTCAAGCTGCATAAGGGATTTGGGCGTTTTTAATCAATAATCATGCAAATTTAACCTCTCTAAATGATAGGTTCGCAAAAAAGACCCTACGAGCCCTTGCTAAGCAAGGGCTCGTAGGGATCGCA # Right flank : CATTACTATCTCCTACTGTTGCTCTTCAGGTTATCCCTCCCCTAAAAAAGCATGGTTTGAAATCAAAATGGTGATAGTGTTTCTAAGGTCAATATTTTGCGACCTAGTGAGCAATAGTCACAAAAAGATTAATAATATAATTTTATGTAATTAGAATGGAGCGGGTTGGAATGGCTACGATCAACGTAATTGTTGCAGATGTTAAAAGTGATGAAATAGAGGCAAGGGAACTAGACATAAATGAAGGTATATACGAGGCATTAGAAAAAATTGCAGAGGGCAATGTAGTTTCTATTAGTATATGGAATGATGTTGTATTGTGGATGAACTTGGATGTACAACAAGATCAATCAGCATTTAATTTCGATCTTACTGAGAAAGAACGAGCTGGAAATGTTGATGAGTATCAACCTAAAGTATCCGTTTTCGGTAACGCAGTGTTCACTGGTACAGATGCAGACGGTGAGCCGATTGGAATGACAGCGGACGAAATTGATTAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTCGTGTAGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 838175-834782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECMT010000001.1 Paenibacillus sp. GSMTC-2017 Contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 838174 32 100.0 34 ................................ TTCACCCGTAATGCGGATGTACCTGGTCTCCGTA 838108 32 100.0 34 ................................ ACCGATCCTGCCGCTACTTGTGAGGATGAAATAC 838042 32 100.0 34 ................................ AGCTATACAGGTACTTACACGGATGATGCAGGTC 837976 32 100.0 34 ................................ TTCATACTCAGCAAGTCGTGGTGCGCTTTTGGAA 837910 32 100.0 33 ................................ ATATAGCGCGTCACATTTAAGACTACACATTGA 837845 32 100.0 34 ................................ ACATCAAGTAGTTTTTTAATGTCGTCGAGTTGTA 837779 32 100.0 34 ................................ TTTGTTGGTCAGGTAATTGATATCATCGATAGCA 837713 32 100.0 34 ................................ CATCCATGATTAAGTGTTCGCCTGTATGAGGGTT 837647 32 100.0 33 ................................ ATTAGTTACCGCGATGAAGAGGAACTAGTGCAA 837582 32 100.0 34 ................................ ATCATATTTGGTGGTCGTATGGATGGAAGCTTCC 837516 32 100.0 34 ................................ GTTGAGCGTATTCGGTCGAATCGGAGTCTTTAAA 837450 32 100.0 33 ................................ AAACTCTTCATGCGTTAGCCTAGCTGCTTTTGC 837385 32 100.0 34 ................................ AATCATCATGCGAATTGGATCTTGTGACTTTCCA 837319 32 100.0 34 ................................ TTCCTCCCTCACCTCATCTGGGTCAAGTACCCAA 837253 32 100.0 34 ................................ TGATTCATCAAGGACATTTGTAAACCATAGCACC 837187 32 100.0 33 ................................ ATTAACCCGACTAACTTTACGCTGAGCCATCAT 837122 32 100.0 35 ................................ ATATGCCATTCATTGCGATTATCCCGGCGTGGGGA 837055 32 100.0 33 ................................ TACCAAGTAACCACTTTTCGAAATCATCGCGGC 836990 32 100.0 34 ................................ AAAACAGAGCTGAAGCTTAATGAGGACAAATTAA 836924 32 100.0 34 ................................ ACAAATGGCAAGTTACGATAAGAGCTAACGGCAA 836858 32 100.0 34 ................................ TATAACAAAAAAGGAAGCCGCTAGGCTCCCTCTC 836792 32 100.0 34 ................................ ATATCTATTGCGTCTCTACGAGTCTATTAGGCGG 836726 32 100.0 34 ................................ ATAATAACGAAGATGACCTAGCGGTCCACGAGGT 836660 32 100.0 34 ................................ AACTATTGCTATTACTGCGCCTAATGGCAGGTTA 836594 32 100.0 34 ................................ CTACATAGTCCAAACGATCACGCAGACTTGCATA 836528 32 100.0 33 ................................ ACGCTACGGAGCTAGGAATCAATTGGATATCTA 836463 32 100.0 34 ................................ CACATCATTGCACCAGTATATAATACCGTTGCGA 836397 32 100.0 34 ................................ CTCCTTGTTTTTGAACGTAAAACAACGGCTCCAT 836331 32 100.0 34 ................................ TATGGTATCCAAGAGGAGGAGCAGCATGACCGAA 836265 32 100.0 33 ................................ TCTCGTTTGTTGAAATCGAAATTAGATTAATTA 836200 32 100.0 34 ................................ TTAAAGAGTATGACTTGGATGATGGTGATAAAGC 836134 32 100.0 34 ................................ ATTATGACTCTTAACCGTTTGAGTATCCCTATGC 836068 32 100.0 34 ................................ CCCAAAACTGAATAGGATCAATCAATCCCGATGC 836002 32 100.0 34 ................................ TGAACGTCGTAGAGCAGAGGTGCGATTAGTATTT 835936 32 100.0 34 ................................ GATCACAAATGCCTGGAATGGTAGAGAAGATGGG 835870 32 100.0 34 ................................ AAAGTGACTTTATTTATGTATGTCTATAAGTGGT 835804 32 100.0 34 ................................ TCCATCCTCCTCACGATATCGCTTGCCAATTCTA 835738 32 100.0 36 ................................ GGTTAAAGGCAATGTCCTAAAGTAGGGATAAACAAA 835670 32 100.0 34 ................................ TGTCAATTGTGACCTTAAGATCTGAAATCGTAGA 835604 32 100.0 34 ................................ TATTAGCGCGACGACACTAGGCCCAGTCAACGTT 835538 32 100.0 34 ................................ ATGTGCTTTAGTTGGGCGATCTTGCACACTCTCA 835472 32 100.0 35 ................................ ATAGTTTCAACCGATATCTCAAACATATGACTGAG 835405 32 100.0 34 ................................ ACGGATCGGATGAGCTGCTTCCTGAACTTAACAT 835339 32 100.0 34 ................................ TCACCTTTGTCCGTTGCTTCGATATACCTACGTT 835273 32 100.0 33 ................................ ATCACAAGTATGTGACTGAATGGTTTGTTGAAA 835208 32 100.0 33 ................................ AATATTGCGTAGTGAAAGACTACCCATATCGTC 835143 32 100.0 34 ................................ AATCAAGTCCCAAGCACCACTATAAGGTGGTAAG 835077 32 100.0 35 ................................ ATGTCCTAACCTCGTACGTTGAAAATCATACTTCA 835010 32 100.0 34 ................................ ATCATCTTCCAATAGTTCTCTTACGGACTCGTGT 834944 32 100.0 34 ................................ CACCAGATGCGGCGAAAGGGATGGCGAATGTAAT 834878 32 100.0 33 ................................ AACTCTTACCGGTGGTGGCTCAAGCTCTTGCAT 834813 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ==================================== ================== 52 32 99.9 34 GTCACATCCTTCACGGATGTGTGGATTTAAAT # Left flank : CCACCTTTTCTATGGAAGTAGGTGCTTTAGTTGTTGGTATTAATAACTTATGATGTAAGCACTATCAGCAGTGGTGGTCAGAGAAGGTTGCGGCATGTATCTAAAATATGCCAAAACTATGGTCAGAGGGTCCAGAATTCTGTATTTGAATGCATTGTAGACGCAGCTCAATTTACGGAATTAAAATTAAAACTTCTCGATATCATCGACAAAGATCAGGATAGTCTTAGATTCTACCAACTAGGAAATAACTTCAAGAATAAAGTAGAACATGTTGGTGTGAAAGAAGCATTGGATCTAGAAGGTCCACTTATATTTTAGTGCGAAAGCGTGGTGCGAATGTATAGTGCACATGAAATCCCCGGGACATTCGCACCAGATATAAAGAAGAAATTGTTAATAAATAAGCCGAAAATGAGACGGAATCATGTGTCAGGTTAATTTTCATACGATTTTTCATGAAAATATAGTCTTTTTTATATTTTTAGCGTAAAATCGCC # Right flank : TTAGCTAGGACGTTTTAAGTCTATGCCTTCGTAAATGATATGTCCTTCGTGCGGGTTATATCATGCTAAAGACCTCAATGCAAGTATGGTTATCCTGAAAGAAGGCTAAAGCTATTGTCAATATAATCGTAGATAACGTAGGGACTAGGAGGCTACTTTACTTCAAGAAAATCTTCAAGACTTTCGTATACTATATACACACACAACGTTAGTGTCTTTTTCATGTCACTCGTTAATATTAACATAGTAGAGAACAGAGATCCAAAAGTATGGTACGTAGAGATGCGACAATATGGAGGTTTTTACAGCAGTGAATCGATAGTTTACAACAAGGAGGGGCAGGAGCCTGTCCTTGTTTTTTACATGGTCTTGGTGGAAACTCGAACAATTGAATATATCAGCATCAGCACTTCAAGTCTCCGCAAACTGTCATTTCGGAGGACTTGCTTGGTCATGGTCAGTTTGAAGGAGCTAGTATCGGCTTCCGGTAATTTTGGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTTCACGGATGTGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 850800-847808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECMT010000001.1 Paenibacillus sp. GSMTC-2017 Contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 850799 32 100.0 34 ................................ GGCAAATGGCATCCGCAAATCAAATTTCAAGGCA 850733 32 100.0 34 ................................ CTAACTTTAAACCAAAGTCAGTAGCAATTTGGTT 850667 32 100.0 34 ................................ TAACTATTTTGTGAAGAAGTTGAAAGAAAAAGCT 850601 32 100.0 33 ................................ CACCATAGTTCGGATACTAGAGCTTGGTTATTT 850536 32 100.0 33 ................................ TCCTCTGTGCGATCCTTCTGCTATCTCGTCTTT 850471 32 100.0 34 ................................ AAAACTATGTAGGAGATCAAGCTCAGAAGCATGC 850405 32 100.0 34 ................................ TACACAGAATAATTTCAGCCTTTTATGCTCCTGC 850339 32 100.0 33 ................................ TCCACTCATTTGAACCGTCAAGCTTTCACCTGT 850274 32 100.0 33 ................................ TTACTGTGAAGAACGAAACAAAGGCGTTGATCC 850209 32 100.0 33 ................................ TATTCACTTGATTATCGATCAAATGAAGCTTTT 850144 32 100.0 34 ................................ ACAGTAAGAAATGACATCTTCAAAATTAGGAGGA 850078 32 100.0 34 ................................ TTAATAGATTATCTAGAAATAGAACCACGTCCAA 850012 32 100.0 34 ................................ TATTATATCAAATTAAGAGTTTACCACAAGGTAA 849946 32 100.0 34 ................................ TATCTATCAATCTTCCATCCACATCTAGCGGCTC 849880 32 100.0 34 ................................ CATCCTGACATACTGCATTACTTAGTGATTGATA 849814 32 100.0 34 ................................ TTGATGTCTCCACAGATTATCTTTTAGGTATGTC 849748 32 100.0 35 ................................ CTAAACTATGGGCAATGGTTACACCGATACTTGCA 849681 32 100.0 34 ................................ CCATTATTTCTTTCTTGTAAGTGAAAACCACCTT 849615 32 100.0 33 ................................ ATCATCTCGGAGTCGTTTGCAGAAGCTAGTCAA 849550 32 100.0 33 ................................ TTTAACAAGAACAAAATATGAAATATGGGACTT 849485 32 100.0 34 ................................ AGTACCGGTCGGGCTAATTCTCGGAATGTTAACT 849419 32 100.0 34 ................................ TCAAATGTCAGCCACTAAAGAAGAGAAGCGCAAT 849353 32 100.0 33 ................................ ACTCCCTCTTTTATACAAAGTGCCGCCCCCATC 849288 32 100.0 34 ................................ TGCTGGTTTGGTTAATTACACCAATCATAAGCGT 849222 32 100.0 33 ................................ CTGCAAGGTATCCAGATAAACGGACGTTTGGGC 849157 32 100.0 33 ................................ GGGCAGGGTATCTTACTGTGCTGGATGAATCTC 849092 32 100.0 34 ................................ TATGACTACGAGTCTCCATGAGTCCCTTACGAAG 849026 32 100.0 33 ................................ TCTAACAATGCCTTCTGCTAATCTTGTAGCCAA 848961 32 100.0 33 ................................ AAATTTCAGCACTCTTGCCAACCATGCCAATAA 848896 32 100.0 34 ................................ TATTTGCTATATGTATATTAGGACTCATTGGATA 848830 32 100.0 33 ................................ TTATAGATGATAAGATCAGAGTCATTTGCTGGT 848765 32 100.0 40 ................................ CTTTTGATAACTCTGCGTTTATGTGGTTTAAAACCGCCAG 848693 32 100.0 33 ................................ TTCTGCTGGCACTTTGGTGTGTTCCGTGAGATC 848628 32 100.0 34 ................................ CCTTCGCAGCCATACATTGCGGTAGAACGCAGAG 848562 32 100.0 33 ................................ ATCGGTCTACTACTTGGGGGCATTGGAGCAAAG 848497 32 100.0 34 ................................ TTCTATACTAAGCTCCCTACTTGGATTACTGATT 848431 32 100.0 34 ................................ TGTAAATAATCTGTTGTGATATCCCTTATGTACG 848365 32 100.0 33 ................................ AAATTCGGGGTTGCCGTTTGAAGCAGTTTACAA 848300 32 100.0 34 ................................ ACGCCCGTCACCCTAGTAAATCAAAGACGGGTGA 848234 32 100.0 34 ................................ GATGATTATGGGCTGGATTAATTACTTTGTGCCA 848168 32 100.0 34 ................................ GGGATGGCTTTATTCGCCTTGTTGCGGACGAAGA 848102 32 100.0 33 ................................ CTATTAGAATGTGGGGAATTGAGTAGAGAAGAC 848037 32 96.9 34 .........G...................... CCTAGAACGACTGAATTAATTAGAGGAAATGATG 847971 32 96.9 34 ...G............................ GGTCAGATCACAGGGCTTACAGAGGCACTTAAAG 847905 32 100.0 34 ................................ TAATCTCAAATCAGCAACAGCGAGTTCAGCACGT 847839 31 96.9 0 .......................-........ | A [847814] ========== ====== ====== ====== ================================ ======================================== ================== 46 32 99.8 34 GTCACATCCTACATGGATGTGTGGATTGAAAT # Left flank : GCAAGAGCGATAGCGCTGAAACCATAGCTCATCATGTTTGTTGAAGCAGTAAGCAGCTTGGATTGTCTTATTTGTTCATATCCCATGATATGCAGATGATAGGGAAGTTCGCAAATGAAGTTGTTGTAATGGATTAAGGTCGAATTGTGGAGAAGTTACAAGAAGCTCAATCGCTTGGTCGCATACACCCAGCGTCTCATCATTTAGTTGATTCGATATTGCCGATGCATGCAATTACATTTTATTGAATTAATCAGGAAGAATATGTTACTATCACAACAAATAGATTCAAAACTTTTAAAATAAAATTATTTTATCCATTTTAATAATGGTGCGAATGTGGAGTGTACATGAAAACCCTGGTACATTCGCACCACTATTAGAGCGACTTTTTATGTAAAAATGCACAAAACTGTTATCGTAGTATTGAATTTTTTATAAAAATATCTGATAGATGAGTAAATTTGGTCTCTATTTCAAATATTTTATTTAAATTCGCT # Right flank : AATGTTGTTTTATATATTACTAATGCTGTAAAACACTAAACTAACCGAGACATAGTCGTAGCAATGAACTCAGATTAAAAGATATCTCGTTTTAGGATTATATAGATCTTCTTTTAACTAGTTAATTTCAATATGGAAACGACAATATGCTGCCAATTCGTCTTTTATTCTATAGTTTTGCGTCAGATGAAGACAAAAAATATCTTTTATAGAGGAAATTATTGGATTTTGTCGAATTTATAATCATAGTATCTCATTTCCTGAAATAAGGAGCGAATCTATGATTGATAAAGTTATTCGACTAATAAATATTATTATCGCAATTCAAGCAAAACCAGGAATAACTGCGTCCGAATTAGCACTCAAATATGATGTTACTATACGTACGATTTATAGAGATATAGATATTATCAGCTTAATTGCCCCCATTACAAGTGAAGGTAGAGGTGCTGGATTTAGATTTATCGGTCATTTTTTTATGTACCCTCTTAACTTCTCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTACATGGATGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //