Array 1 2346028-2349229 **** Predicted by CRISPRDetect 2.4 *** >NC_011830.1 Desulfitobacterium hafniense DCB-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2346028 33 100.0 36 ................................. AGGTCGTTGGCAACCTTGTCGTCGCTCCGGTCAAAC 2346097 33 100.0 34 ................................. TGGTTCTCATGAGTGGTCAGGGCGCGGGGGGATG 2346164 33 100.0 35 ................................. TCCTCCTCGGCATCCTGAGGCCCGCGCCATTCGTA 2346232 33 100.0 35 ................................. ACCCTAAGCAGCTCCCTCACCGTCACAAGCGCATC 2346300 33 100.0 34 ................................. CGGGCATGTCTGAGGACAACCAAAAGCTAATGGA 2346367 33 100.0 34 ................................. TATTTCGGACGGTAGCATGACAACTACCGCTAAG 2346434 33 100.0 33 ................................. TCTGTCCTGAAGTAGTCCAGGTCATCACCGCTG 2346500 33 100.0 35 ................................. ATGCTTTGCACCTCCTCCCTACAATCCAAATGTGC 2346568 33 100.0 33 ................................. TCGTATTCCACGAGGAAGTGACTGACTCCATGA 2346634 33 100.0 33 ................................. CGCAGTACATAAAGGAGTGGCATGACTATGTAA 2346700 33 100.0 33 ................................. GCTGATAACCCGGCGAATGGAGATACCCTCACC 2346766 33 100.0 35 ................................. TCCACCAGTGCGGCCACATCGGCCTTGACCTCATC 2346834 33 100.0 33 ................................. ATGTAGAAAATGTTGGGGTGGAGGAGAGCGTGT 2346900 33 100.0 34 ................................. AGGCAGATCGATGTAAATACCGCCACCTGGGGAT 2346967 33 100.0 33 ................................. TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTG 2347033 33 100.0 35 ................................. TTAAATGAGATGACGAATTTTGCAGGCTCGACTCC 2347101 33 100.0 33 ................................. CGCGGGCAACGGCATATTCTATGATAGAGTAGA 2347167 33 100.0 36 ................................. AAACGGGTTAGCTGTATCCCAATGCTCCACAATGTT 2347236 33 100.0 33 ................................. AAGCGAATCATTTTGATTGGTTAATAATTCAAC 2347302 33 100.0 33 ................................. AAGCGAATCATTTTGATTGGTTAATAATTCAAC 2347368 33 100.0 36 ................................. TTTCGGATACTTTAGCCACAGTTTGGGCCTCCTTAA 2347437 33 100.0 34 ................................. TGGAGCCTGTGGCTGTGAGTGGAGTAGACGGCAT 2347504 33 100.0 34 ................................. CCGGCAGTCCGCTGGGGCTTATCATCCTCATGTC 2347571 33 100.0 34 ................................. CGGCCCTCGGCCACTATACTTTAACCGAACTGGA 2347638 33 100.0 34 ................................. ATCAAGGCGTCCTGCCCATCGGCTTTACGGCCAA 2347705 33 100.0 34 ................................. CCACTGCTAAGATATACTTTAAAAATCAATGGGT 2347772 33 100.0 33 ................................. AGCTTTTCCTCAACGTCTAATTTTAAAATTGGA 2347838 33 100.0 34 ................................. TAAGTGCGACAACACAATGAAGGGTTTCATTTTT 2347905 33 100.0 35 ................................. ATTATACTTCAGGAAATCTTCCGAATCCTCTATCA 2347973 33 100.0 36 ................................. ATATTGTCTTCGTTGGGACAACTGCCAATAATTATG 2348042 33 100.0 34 ................................. AATGGAAATATCAACGTTGATTATGAGTGGGAAT 2348109 33 100.0 34 ................................. CCACATGATCAGCGAACAGGTCTACAGCTGGAAC 2348176 33 100.0 33 ................................. TTTGGTACAATTGGATTCTTTCTAGCAATGTCA 2348242 33 100.0 36 ................................. GAAGCTAAAGTGAAGGATTTATGGAACCATACTCCT 2348311 33 100.0 36 ................................. CGGCGAGGATCGTGTCGGCATGGGGCGCAACCGCAA 2348380 33 100.0 36 ................................. CGTGGATGAGGCTGAGGCGGCGTTGAGGGAGGTGCG 2348449 33 100.0 36 ................................. TTTAACTCAGGCTATGTTGATTACCTGGATGCCAAC 2348518 33 100.0 36 ................................. AAAAGAGACTCGGGTTAGGGCATGCACCCTTGGGGG 2348587 33 100.0 34 ................................. GGGGGAACAGCAAACGATGGGCAAAATCAGCTAC 2348654 33 100.0 34 ................................. AGTAAAGCCCAATAGCGTAGGAGTGCCTCCGGTA 2348721 33 100.0 34 ................................. TAAAGTACTTTAATAGATGGCTTAAGTCAAATAG 2348788 33 100.0 35 ................................. CAGCCCTCCCTGCTCTGGTGACTGGAGTGGCCATA 2348856 33 100.0 33 ................................. CCTCTCGGGTGGACCGACTTAGATGCCTAGGGA 2348922 33 100.0 36 ................................. TGCGCGTGGTCTTGCAAAGGGAAGCAGAGCTGCCAA 2348991 33 97.0 35 ............G.................... TCCTTGCAGCATGGTGTGGCCTCCGCAGGGGTGAA 2349059 33 97.0 35 ...............G................. AAGGCCATTAACGCGAGTGGAAAGCTTACGGATTA 2349127 33 93.9 37 ............G........A........... AACGTGTTAGGAACTAATGGGCGCTTTGCTCTTAATC 2349197 33 97.0 0 ....A............................ | ========== ====== ====== ====== ================================= ===================================== ================== 48 33 99.7 34 GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Left flank : TATCCTTTGCAAACCAACTCGAAGAAATGCGCCTTTGGTCATTTTTATCACTCCATGGATGTTTCCGGAACGGTTTTGGAAGACGCTTGGCGGGCCATCGATCAGGTCCATGACGAATTTCATACCAGCGGCAGTAAGGTCATCGAGGCTGTCAAAGAAAATAAACCGGAATTGGCCAGGAACCTGTTTTTACATACGAAGGAACTTTCTCAAAATATCTTTGCTAAATTGGATGAAGTCACCCATATCATAGAAGGCAGCGCCGCTCAAGGAGTGGAGATCCTGAGAACCAGTAAGGCGAGCTGAACACAATCCTTTTGCCGCTTATCTGGTGCGAACCTGTAGTGAACATGAAAATGATGGGGGGTTCGCACCGCGAAATATGAGGGAAATTGTTGTAATATGGAGATTGTAGTAGGTCTGGCTTTGGTTGTTGGTAGAAAAGTTTTGAAAAGTAAGCAAAAATGAACCTGTTGGGTGACTTTTGTTTACTTTTTGCT # Right flank : TAAATAGGAGGGACTATTTCAACTGGTCCCTTGATTTCTAATACAAAGCCGGCCTGGGATCCCCAGGTCGGCTTTGTATTACATAGCTATTTTTGATTCCAATATTTCTATTCTTCTACGAAGCTCATTTATTTCAGTCTTATCGTCTCTCAGTTCCTTAACTGCTTGCCAAGTCATCTCCTGCTTAGCGGAGATTTCATCCAACTTATCAAGTTTTTTATATGTTTCTCGATTGTCAGCCTTCAATGCTTTGATATCGGATTCAATCCGGTCAAGAATATTCAGCCTTTCAAGGATAATATCCAACTTGTCCATTGCTTATCCCTCCTGAGTTTTATAGTACCACAGTGATATTTGTAATACAATGCTTGGAGCTGCCGTTGGCTGAATGAATTAAGAGGGTCATTTAAGCTACGTTGCTCCCTGTGAGAGAGCGTGAATTACTTAAGAAATAGATTTCTATTGAGATTTTGAGAGTTTTCTGATAAATTATAGTTAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.40,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 2361841-2365779 **** Predicted by CRISPRDetect 2.4 *** >NC_011830.1 Desulfitobacterium hafniense DCB-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2361841 33 100.0 35 ................................. CCTATGGGATGGACAGATATAAATTAACCATGTCG 2361909 33 100.0 33 ................................. AGCTGAAAATCTATCTGCCGCCCTGACTTATTT 2361975 33 100.0 36 ................................. GTCACTGAATCAGCGGTTACTATCACTGCAGGGGTA 2362044 33 100.0 34 ................................. CGGGCAGTGCCGGCTTTGTACTCCATCCAGCGCG 2362111 33 100.0 34 ................................. TGTCCGGATACGAAGTTGGTCTCAGTAGCAGTGA 2362178 33 100.0 36 ................................. TCGTGAGGGATTCCATGATTTCAGCTCCGGTAAAGT 2362247 33 100.0 34 ................................. TATTTCGGACGGTAGCATGACAACTACCGCTAAG 2362314 33 100.0 34 ................................. AAACGACTGAATACGTAGACACGGCGAAAACGAC 2362381 33 100.0 34 ................................. CCCGGGGACGTACTGCCAAGCCTTGTTGAAATCT 2362448 33 100.0 35 ................................. AAATCGCTCAAGCAGTAACAGTTCGGATTTGTTGG 2362516 33 100.0 35 ................................. TTTTCGTCCAAATCGGGTGCCTCGTGAGGCCTGAC 2362584 33 100.0 34 ................................. TTTTTCTGCACAGCAAGCCACGCATAAAACTCCT 2362651 33 100.0 33 ................................. CCTGGGGGCTTAGTGATTAAGCCGTCAAGGATA 2362717 33 100.0 33 ................................. CGTCAGCGCCTTTGCCGACAGGCTTTCCGATAT 2362783 33 100.0 33 ................................. TGACCCTCGCTGCCCACCAAGTTGGCCATACGG 2362849 33 100.0 36 ................................. TATAATGTTTTTCATTAACTCTATAGGTTTTTCAGA 2362918 33 100.0 34 ................................. TGTCATTCCACAATAAGCACAGGCATCTCCAAAA 2362985 33 100.0 35 ................................. ATTGTCAGGATTGTACGTTACACACCAATGCCAAT 2363053 33 100.0 33 ................................. TAGAATTTGTGGTAACGCCTTTTCTAATCTTTC 2363119 33 100.0 34 ................................. GAATACGCAAAGGTGATTTTTGAATGCGAGAAGG 2363186 33 100.0 36 ................................. TGCCGGTTCCTGCCCATGCCGACACGATCCTCGCCG 2363255 33 100.0 35 ................................. CGTCCTACCTGATTGAGAAACGCAATATCAAAGAA 2363323 33 100.0 34 ................................. CCTCCAGTCTTTATCAACCTCAGCCGGGGTTTCT 2363390 33 100.0 36 ................................. GCTCAATCTGCAAAAGGTGATGAGCGCAATCCGCAA 2363459 33 100.0 34 ................................. ATAAAGGCCAACACGATAGCAAACAAGGCGACAT 2363526 33 100.0 33 ................................. TGCAGCATACTCGGCAATAAGGGACTCAAAGAA 2363592 33 100.0 35 ................................. CCAAAGCCAAACAAACATATACCGGGAATCGGACG 2363660 33 100.0 34 ................................. ATCAGACTGGCCGAAGAGATGAAGAATCCTATTG 2363727 33 100.0 33 ................................. AATCGATTGGTCCATAGAGGCAAAAATCTCTTT 2363793 33 100.0 35 ................................. TGGATCGCACGAGTGGTCAGGGCGCGGCGGGCTCC 2363861 33 100.0 34 ................................. AAGGCTGCTTGTAATATGGAAAGGCGCTGGAGAG 2363928 33 100.0 35 ................................. TTGCCCTCCTTCGAACACCTTACTTTGCAGGTCCC 2363996 33 100.0 34 ................................. ATTTTTACAAACCAGTTGACAATCTCCGCATGAT 2364063 33 100.0 33 ................................. CCAGGCGTGCCTTGGTTAAAGCAAGAATCTGAG 2364129 33 100.0 34 ................................. TGTTGGGACAAATCCGCGCCGGCCTGAAGATTTG 2364196 33 100.0 34 ................................. CTGATCCGGAAGTCTATATTTATCAAAATCAGGA 2364263 33 100.0 33 ................................. CGTATAGGGTAGCAAAGCTCGTTATCGAGTGCG 2364329 33 100.0 35 ................................. TTGGGCAAGAGGCGGACCTTAGCGGAGCCAAACAG 2364397 33 100.0 35 ................................. AGCCCATTTGTATGAATAGGGTCGGCCTGTCTTGG 2364465 33 100.0 37 ................................. CCCGCATGAGCCACAAACATGTCTGATGCACACGCAC 2364535 33 100.0 33 ................................. ATACCGTTTACAGGCATCATATCTTTGCTTATG 2364601 33 100.0 34 ................................. ATACACGCTATTATGACCGGGGAAATGGGGGAGC 2364668 33 100.0 34 ................................. TGATACATAAAGTTATCGATGTAGGTTATGTTAT 2364735 33 100.0 37 ................................. CCACCTGATAGGTTTTGGTTGGTCGGAAGTCCTTTAA 2364805 33 100.0 33 ................................. ACTTTATCTACTTTACTCCTACTGGTGTACTAA 2364871 33 100.0 33 ................................. ACTTTATCTACTTTACTCCTACTGGTGTACTAA 2364937 33 100.0 34 ................................. TGAAAAGCTCTATTACAGCTGCCTCAAAGGCATC 2365004 33 100.0 34 ................................. GCCACACTCATGGATAAAGCTAATGCCAATAAGA 2365071 33 100.0 36 ................................. ATTGCCGGCTTGCCAATCCTGATGATAGCCTGCAGA 2365140 33 100.0 34 ................................. TGAAGTGTCGTGACCACCCCGGCTGTTAGGCCAC 2365207 33 100.0 35 ................................. TCCGCACTGGGAATGCCAATCATATTGACTCTGGC 2365275 33 100.0 33 ................................. CTGCTCAATCATAGTCAACTCATCTACCCAACT 2365341 33 100.0 35 ................................. GCCTATAGCCGCTGTGTCTTCCAGATTATACGCTG 2365409 33 100.0 36 ................................. AGCAACTATTTAATCATTCTTCTGAGCGTCAGACAC 2365478 33 100.0 35 ................................. CCCGTTTTCGTGGGACCAATACCAGATATCCGCCC 2365546 33 100.0 34 ................................. TCGCATACTACCCGATACCGCAGAGCGTCAGCAA 2365613 33 97.0 33 ............G.................... TCTATTCGAGAGTGGGCTTGATACCAATTCCGA 2365679 33 97.0 35 ............G.................... ACAACATGGTCATGTAGCTTTTTTACGCGACGTTC 2365747 33 90.9 0 ............G............A..T.... | ========== ====== ====== ====== ================================= ===================================== ================== 59 33 99.7 34 GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT # Left flank : TGGACGGATATCCGGCTTTTATGTGGAAGTAGGTGAGAGAGATTTTAGTGCTGATCACGTATGATGTTAACACTCAAACCGCGGCAGGAAGAAAGCGGCTGCGTCAGGTTGCCAAGCAATGTGTGAACTATGGACAACGTGTCCAGAATTCAGTCTTTGAATGTGTGCTGGATGCGGCAAAATTCCGCGAGGTTCAGCATAAGCTGGAGCAGATTATTGATACGGAGACGGATAGTCTGAGGTTCTATATGCTGGGGAATAATTACAAGAACAAGGTTGAGCATATTGGGGCAAAACCTTCGTTTAATGTTGAGGATACGTTGATTATTTAGTGCGAACCTATAGTGCACAGCAAATCCTCGGGAGGTTCGCACCGTGAAACGAGAGAAAATTTGTTGAAATGTGTGAGTAAATAATGGGAGTATGCTGTAGTGAGGGGAAGAAGTTTAAGGAAATGAACAAAAGTTGACTTTGGTAGATAGTTTTGATTACTTTTTGCA # Right flank : TCGCCTAAGCTCTTGATCGGCGGTAAGCACAAAAACAGTCGTTCTTTCCGCAAGAGGCGAGGGAGTGAAGCGCACATAATTCGAACTGTTTACGACAGTTAAACCCTGTGGCGAAGAGTTCGGATTGTGTTATATCTCTGAAATATGATAGAGGATGCCAGATAAAAGGCATCCTCTAACTTTCGCATTGCGATTATTACTGTATTTTATATTTTAAGGTTTTATAGATTGCCTGACCACATTCGGCCAAGGAACAAACTACAACAACAATAGCAATAAAAACAATAAACAAGTTCGCCCCGCCCACTCCCATGAAGCCTAATGGGTCAAAGCTGCCCCAATCAATACTTTGCAGAAAGGCTGTAAACTCCGTGCTAAACAAATCCGGCCTATTTAGTAGATAGATCATGATGCACATGTTGATTATAGTGCTTATAACAACTGCACCGCAAACGATAGGCGTCCATCTGCGAACCTTGATTTTGAAAATACATGCGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCTCTACGAGGCTCGAGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 4166022-4165529 **** Predicted by CRISPRDetect 2.4 *** >NC_011830.1 Desulfitobacterium hafniense DCB-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4166021 30 100.0 37 .............................. CCTGCTGGAAGCCATACGCACCGGCTCCAACCCCACA 4165954 30 100.0 37 .............................. GCAAATGCGTTTTTGGGCAATCCCAAAAGCACACCGA 4165887 30 100.0 36 .............................. CATATGAGCGCCGCCAGTTCGGCCAGCCTGGTGTTT 4165821 30 100.0 35 .............................. GCTTTCAGAAGCTTCGGGTGAAAATTGAGCGGTTT 4165756 30 100.0 36 .............................. TAAACATGACTCAAAAACTCCGTGACCTCAAGGATG 4165690 30 100.0 37 .............................. ATATCATCCACACTCATGTAGAGAAAATTGGGCAAAA 4165623 30 100.0 35 .............................. TTATGTCCTGCGGTCTCTTCCATTTGCCGTATTAA 4165558 30 90.0 0 A................G..........G. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 36 GTTGTTAGCTTACCTATAAGGGATTGAAAC # Left flank : AGAGCACACTATCGAATAGACGGTATGCAGCGACTTTTGAAAGGGATAGGCATAAATTTAGGGGAGAGAAAATTCGGAAGATGAGGTATACTTATGTTTGTGATCTTAGTCTATGATATGGGGGAAAAGCGGGTAGCCAAAGCACTGAAGCGGTGCAGAAAGTACCTGAACTGGGTGCAGAATTCTGTCTTTGAGGGAGAGATTTCGGAAAGCAATCTGGCAAAGCTGAAGATGGAGCTGGACAGGATTATAGTGCCTGAAGAAGATTCGGTTATTATTTATACACTGAGGACGACCCGCTATTCTGAGCGGGAGATCATGGGTTTGCGAAAGGGAGGTCAGAATTTAATCATATGAAATTGTCGTCGATGTGCAGTAAGGTAAAAATCCCTGGAGATCGACGACAAGGGATGTCGCTTAGTAAGCGGCCTGCAGAGAATAGTGAAATTTTTGAGACGGCTCCAGGGAGCTGTAGATGTTGATTTTATGCGGGTAAAATG # Right flank : CAATCAGATTAAGGAGAAGCAGGAACGGCTTAGAGAGATTAGAGCTTCTGAGAAGAGTCTAAAAATATATGTACATCATGTCGGCGGTAGTTGTTGCCCAAGAGAGATCACAATGCTAAAGGCTCAATAAAATATGTAATACAGGAAAGAGTAATTATGCGGAGGAAAGAGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACAGACTCTTATTTGATGAAAAAGTAAAAAATTGTAACAGATAAAATGACGTGGCAGGAGGTCTAAATCTAGTCATCCCCTACCGCTCACCCCGGTGCAGAGGCAATGACACGAAAAGGTTTTGAGAAGAAATCCGTCTATGAAGTATCAAGATGGAGCGGGAGGGCTGGACGATGAGTCGCGGCTTGTAAATTCCATTACCTTCATTTTGTACCACCAAAATAGCTCAGAGCGCTGGACAAGGGACAGGGAAGATCATCCCTATTTGGCAGTTGTGAAACCAACGTGAAAAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 4 4174144-4172990 **** Predicted by CRISPRDetect 2.4 *** >NC_011830.1 Desulfitobacterium hafniense DCB-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4174143 30 100.0 35 .............................. GATTCCTCGGTGGCTTGAGTTGGATTTTCTTTTTT 4174078 30 100.0 35 .............................. AACATGGCGCTGTATAGAAATCAGTCGTTTCCAGC 4174013 30 100.0 36 .............................. CTGCTTCCGCCGAAAACCAAAAAATCAAAACGCATA 4173947 30 100.0 36 .............................. AAGAAGTCAATAAAAAAGCAGCCCCGGTTCCCGCCG 4173881 30 100.0 37 .............................. CCGTAGATAAAGCCATCATATACGGCAATCGAGCAAG 4173814 30 100.0 35 .............................. ATCTAATCAAGTTCATCAACTCCTGAGATAAAAAT 4173749 30 100.0 38 .............................. CTTCCAACAGGGGCTAAAAAGGTCCCGGAGATCTCTGG 4173681 30 100.0 36 .............................. CGCGCAAACAGTATCAGGATGCTCTCAACGATTTAA 4173615 30 100.0 37 .............................. CGTTGTCATCGCATCCATCCTGGCCCCGATATTGAGG 4173548 30 100.0 33 .............................. CTCATAACTCTGTCGGTATTCTTCGCGGGACCA 4173485 30 100.0 35 .............................. GGACTCATAGTAAGATATCCATTCATCCTCGTTGT 4173420 30 100.0 37 .............................. TAATGTTTGCCTTATTTCCGTCTTGGCCGGCAAGCCC 4173353 30 100.0 37 .............................. GGGGTTTGCAAATAGAGGTTTTTGTAGTAGTCCTCAA 4173286 30 100.0 35 .............................. ACACTAGGATTATTAAAGTTTATACTATGATTATA 4173221 30 100.0 37 .............................. CGGTCATTTCCGCTTTGATCTTCGAAACTGCTTCAGA 4173154 30 100.0 39 .............................. CATTGAAGCGAATATCCAACCAGTGGATTCGGTCGAAAA 4173085 30 96.7 36 .G............................ GACTGTACCTGACGGTATAACAACAGTAATGGTTAG 4173019 30 90.0 0 .................A...A.......T | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.3 36 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : CTGACTAAGCCGATACTCTATAAGGTCTACCCGGAAGTATCCTATCCTGTGGCGGAGGGAAAGGAAATTGAGATGAGGACAGTTGTGCCTACGGCTCTTATCCGGGAGATCGTTCTCAAGGCGGATCGCTACTATTGCCGGGCAGGTGGGTATTTGTATGAGTATAAAGGGCAGCGGACCTTTGAGAAATCAGTGGATTTCCTTTATGAGAAAGACGGGAAGCCTATTGCGTTTATCCCTAAAAGCGATGGCCCGGATTCGCCTTTGGATCTCAGAGTGGCGCAGTTCGGAGAGGACTTGGTATGTCTTGTTTAATGGCCTTGGCTTAATGGGCGGAGATTATTTTGCTATATGAAATTGTCGTCGGTATGCAGTAAGGTAAAAATGCCTGGAGACCGACGACAAGGACTATGGCTTAACAAGCAGCTTGTGGGGTAAACGCGGATTCTCCGGGCTGAACTTGTTAAGCCATAAATGCTGATTGTATGCGGGTAAAATGG # Right flank : ATGAACTTGGTAGGGCTTTGTTTGATGTTCGTTATCTTGAAAAAAGTCTCAAGACCCTTGATAATTCCCTTAAGGCCTGTGAACAGAGTTTAAAGAATATATGTAATACATTTCGCTGGCTGCAGCTCCTGGCATTGTATTACATATATCCTTGTGGTAACCTAAAAATTAGGAGGGATAAGGCGTGGATGATAAATTAGATTTGATTTTAGACAGATTAACGGCAATGGATAGAGGCTTAAAAGCTGAGATAAGTTCTTTAAAATCTGAGATAGGTTCTTTAAAACCCGAAATAGGTTCCTTAAAATCTGAAACTCAGGCGATTAGTAAAAAGGTGGATATGACATGGAGAGCCATTCAGGAATTAATGACCCATACCCGGTTTGTCGGACACAGGAGAGTTAGGGTAAAATAAGACCTGTGGAGGATGATAAACGTGTCAAAAAACGGGAAACGGTATAATCAAGAATTCAAACATGACATTATACGCTTAATCACTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 5 4183305-4179352 **** Predicted by CRISPRDetect 2.4 *** >NC_011830.1 Desulfitobacterium hafniense DCB-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4183304 30 100.0 36 .............................. GCCTGTTCAGATGAGCATGTGAAGAAGGTATTTGAA 4183238 30 100.0 36 .............................. GGCTTTTACATCGTAAGTGATAATGGAGTGAGTGTA 4183172 30 100.0 39 .............................. TCTCACTTCCTTTCCATCATTCCTGATCACGGGGTAGAC 4183103 30 100.0 37 .............................. ATCACTCATTTCGTGGGCATAGATCCTTCCGCGCCTC 4183036 30 100.0 39 .............................. TTCCGCCAGTTCAAACGCTCCGTCAAAGGCGCTGGCCAG 4182967 30 100.0 36 .............................. TCTCGCTCTGGCATAAATAAATCTTCATGCGGTTCC 4182901 30 100.0 38 .............................. CCTGTGATTATGGCGCTGCGACATCGCGTGAACGTCTT 4182833 30 100.0 36 .............................. CTTCTTATGGCCAATCATGAGGATTCTAAATTCCCC 4182767 30 100.0 34 .............................. TCAATATGCTATTTGCCTATTCAGTGTGGGGGCA 4182703 30 100.0 35 .............................. TTTTTGATATCGGTGGAACTTTGTATTTTATCTCA 4182638 30 100.0 35 .............................. TCCAATGGCCGACCATCCCCGTAGAGTTTAGCTAA 4182573 30 100.0 35 .............................. CGCTTTATTTTTACCTTTCTGAGCGCCCTGATTGT 4182508 30 100.0 35 .............................. GCCATTGTGTGTACCTCCTAACGCCTAAGATACTT 4182443 30 100.0 36 .............................. ACATGAGCATAGATGAACTGGCGCAGCTAACAGGCA 4182377 30 100.0 36 .............................. CGGAGTATCGGCGCCCATCTTTCTCGACAACCGGGA 4182311 30 100.0 34 .............................. TTCACCAACCTAACCAGGACCACGGCAAATACAT 4182247 30 100.0 38 .............................. GAGGATTAATCCTCACAAATCGGGGACGTATTTTGCAA 4182179 30 100.0 35 .............................. TCCGATATTTCGCTATGTTTCGGCCTATTTCCATG 4182114 30 100.0 34 .............................. ATCGTGAGGTAAAATCCAAAACCCTAAGACCCGA 4182050 30 100.0 36 .............................. TTCGAGACCTTGTCCATAAGCTTTCCAAATTTTTTG 4181984 30 100.0 37 .............................. ACAAGTACATGATACACGATAAAGCAAGCCTTTCAAT 4181917 30 100.0 34 .............................. AGAAGCAGGAAGAAAAGGAGGATTAGGATGGCGA 4181853 30 100.0 37 .............................. TATATCCTCGTACTCCTGGTAGATAACACATAAGGAG 4181786 30 100.0 35 .............................. GCAAGTCCCACCCCATCCCCTATGATAGTGACGGA 4181721 30 100.0 39 .............................. ACACAATCCTCAAAGCCCTCATAACTCAAAAGACTGCAT 4181652 30 100.0 37 .............................. ATCTCACGTTCTGTCATACTGAGCCTTCCTCACTTTC 4181585 30 100.0 35 .............................. ATCGCAAAGCCTATCGATGTAATCCTTTGACCTGT 4181520 30 100.0 35 .............................. TTTCTATTCTATCGTAAGCCTTTTCGTTGTACCTA 4181455 30 100.0 36 .............................. ACGATTTCCTCAAAACCTCCCGCATGAGTAAGATCA 4181389 30 100.0 35 .............................. TTCAGAAAAGAGACACTGAGGGTGATTGACGTTGC 4181324 30 100.0 40 .............................. TGGCGATAATCCTTCTACAAACTCATAGAGTTCGTTTCCC 4181254 30 100.0 35 .............................. TACCGCAGCCTTGCCCTGGCCCTGTGGTCCATAAG 4181189 30 100.0 39 .............................. TCACCATGACCGGCCTGCCTGTGGGGATGTGGATTAGCT 4181120 30 100.0 37 .............................. CCAGTGACCTTTGTTGTCGTTGTGGCCCTCACGCTCC 4181053 30 100.0 35 .............................. TATAATCTAGGCAAGGTAAAAAAATCCCTGCCTTT 4180988 30 100.0 38 .............................. CTATATTGCAATACCGTCCAACTACCCAATACACTACT 4180920 30 100.0 38 .............................. AATCGTGCCTCGCGGTTAACGTTCTTGCTTTATTACCG 4180852 30 100.0 38 .............................. ACGCAATATCCGTGATAATATGATATTGCTCATAGGAA 4180784 30 100.0 38 .............................. ATATTGCGGACGGCAAAGACTCAGAGGCATATGTTGAC 4180716 30 100.0 38 .............................. TTCTATCTGGTTGGACTCCTGTCTACGGTGGTAAGATT 4180648 30 100.0 36 .............................. ATAAGCCTGTTGAGGACAATACATCAGGCCTATTAA 4180582 30 100.0 35 .............................. CTGCTCTTCAAGTGTGAGGGATCGTTTTTCATCAC 4180517 30 100.0 36 .............................. AAGAACAAACTATAAGCATCACTAAAACCTATCACA 4180451 30 100.0 39 .............................. AAGCTCCTTCGTGTCAACCGGCGTGTTTTTCTCGACTTC 4180382 30 100.0 36 .............................. CCAAAATCAATCTTACGTCGCTGCCATGTCTGGCCT 4180316 30 100.0 37 .............................. TGAGGTCATCGCTGAAAATGTGAGATTCCTTAGTCCC 4180249 30 100.0 39 .............................. AAGAAAAGAATGGCAAACAGGCCCCCAAGAAGGTGGGTA 4180180 30 100.0 38 .............................. TCCCGCCCGGTAATGTTCTGGCTGAAATGGCCGCCATC 4180112 30 100.0 36 .............................. AAATCTGCCCGGGCGCAAAGCCATTATGTGCCACCG 4180046 30 100.0 36 .............................. AATGAATCAGCAGCTCTTCGTATTCAGGACATCCTA 4179980 30 100.0 34 .............................. ATCTCCCACCTGTCCAATACTGCTTTTTCAACAC 4179916 30 100.0 39 .............................. CCATAGAATCCGCTATAGTGATGCCTACGAGGTGTACGG 4179847 30 100.0 37 .............................. CAGGTAATACTAAATGGCTAACACCGACTGCAATAGG 4179780 30 100.0 35 .............................. AGCTGCTCACCAAAGAGATCGTCTTTGAGGAAGCA 4179715 30 100.0 38 .............................. AGGAGAAGGATATCGCCTTCTTCTTCTCTCTCGAAGAG 4179647 30 100.0 36 .............................. GCTCGTCCTGTCGAGGCTGTGCCAAAGGTGCCTTCG 4179581 30 100.0 37 .............................. ATGATCTTGCGACACATGTAGAACAAGTGGGGGAACA 4179514 30 100.0 35 .............................. TCATCGAGGTCATCAGGGTACATAACAAAAGCTAA 4179449 30 100.0 38 .............................. CATTTACGGGTTCCCCGATAAATTATAACACCTCTCCA 4179381 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ======================================== ================== 60 30 99.9 37 GTTGTTAGCTTACCTATGAGGAATTGAAAC # Left flank : GGGCCGAAAGAGCTGCTTCAGTTGGCCGTCGATGGAGGAATAGGAAGTAAGAACAGCCAGGGGTTCGGGTGTGTGGAGATTATCAATGGATAGTAAACATCGCCGTTGGGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACAGACCTTTTCCTGGCAAAGTGATACTGGAGTTTGGTATTAAAGAGTTTACTTTTTCAACAATCCCAGAATTTCGATTTTGATCTAATCCCTTCCTGTGCTAATATTAGCATGAGAGATAGGGCTGATTTCGTTTTAGATAAACTAGCCGGTTTATTCCTCCTACCACTAGATTAGGGGGAGGATAAAAGGCTAAGTTTTAATCGTAGCTCTTGTCGTCGATGTGCAGTAAGGTAAAAATGCCCGGGGATCGACGACAAAGAATATGGCTAAATAAGCGGGCTAAGAAGAGAAGTGCTGATTTGGTTAATTTTGGTCAATGGCTGTAATGGCTTATTTAATGCTGGTGAAATGG # Right flank : GCTCAACAGTGATCTTGCGCTCAGAAAACCCAAATTATCGTTATTAGCTTACCTATAAGTGACCTTTTCTCGATAAAACGGACACTCCAGAGTTAGGGATTCTCTCAGAATCGCAAGATTGCTTCTTTTTTCATCTCAGGTAAATACTCCAAGCTGCTCTCTCAGGGGCCAGCCCCTGAAACCCCGCCCCCGCCGGGTGGCAGAAGAACGGTCTTTAAACTGTTCTGAGGTATAAGGGTCTTGGCCATGTTAGCCAATCAAGGGCAAGGACTTCGTCTCGGCTGACGCCGCCCCTTGACAAGCATCTACCGAGTTGATAATCAGCATCACAGATAAATTTTTCCCGGCAATGGTGTCAGGTGTGACACCATTGCCGGGAAATTCTATATTAAGGGATTAAATATGGAGAATAAAAGCAGGCTATGATATACTGTTTCCATACAATGGATATTAAGGTCGATAGTGATAGTTTCATAACGGAGGATGATCACGATGTCAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //