Array 1 304973-304798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPEH010000001.1 Bifidobacterium pseudocatenulatum strain 1001262B_160229_B11 NODE_1_length_1165277_cov_77.9024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================ ================== 304972 23 95.7 27 .........G............. GACAAAACCCAAAACCGGTGCATGTTT 304922 23 100.0 28 ....................... AACAGGACCCAAAAGCAGCAGCCCAACT 304871 23 87.0 28 .........AC.G.......... TCCAAACACCAAAAACCAGCCTATGAAC 304820 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================ ================== 4 23 95.7 28 GTCCGATTCTGCAGAAACGGACA # Left flank : TCGGATACGTGTACGCGGAAGGCGACGACTTCCACCCGCAGGCAAATATCGACAAAATGTCAGCCGGCATTCCACTCACCGATGAGGACCGCTGGCCATGGCTGAACGTCATCAACTCCTGGATGGTGGCACGCGAGGCGCTCGGCGAAAACACCGTGGTGTCCAGCTCCGCGTTAAAGCGCAGCTACCGCGAGGTACTCGCCAAAGACGTGCCCACATTCTTCATTCACCTCAACGGCAGCCACAAGCTCATTCAGCAGAGGCTCAGCGAACGCAAGGGCCATTTCATGCCGCCCGCGCTACTACCAAGCCAGTTCGCCATTCTTGAGCCGCTTGCCCCCGAAGAGAACGGCGTGGAAATCTCCATCGAAGGCAGCGTCGACGAAATGGTCGACCGTGCCATCAAAGCGCTGAACGCCTATGCGACAACCGTAGCCGCGACGGTAGCCGCCCAAACCGCAACCCAGGCCGCCTAACCCACCATTCCCCAGTCCGCATGT # Right flank : CTCCACACAGCTTAAGAACGCCTATCTCGCTTATATATGGCAGACGTCCTCAGCAAAACGCCACTTCGGGGTACGTTTTTGGCTGTTTTAGCCAACCGACCTGCCATATATAAGCGAGATAGCTCCGGACAGGGGTGTGTTTCTGCCATATATAAGGCAGATACACACCCCTTTGGCTTATTTGCGTCCGAATCCTCCAGCGAGCGCACACAGGGCTCAGCGGCCGTAGACTTCGTGCACGAACTTTTCGAATGCGGCGATGGAACGCTCCACCTTTTCCGTATCGATGCAGTACGCCATACGGAAGTAGCCGGGCACGCCGAAACTGTCGGATGGCACGAGAATCAGGTCGTAATCCTTGGCCTTCATGCAGAACGCATTCGCATCATCCTCAAGCGCCTTCGGGAAGATGTAGAACGTGCCTCCCGGGCGCACCACGTCGAATCCGAGGCGCACCAGCGCGTCATACAAGAGGTTCATGTTCTTCTCGTACACGGAAA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGATTCTGCAGAAACGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 79181-83787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPEH010000002.1 Bifidobacterium pseudocatenulatum strain 1001262B_160229_B11 NODE_2_length_563162_cov_66.8054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 79181 29 100.0 32 ............................. AGAATGGCTTCCGAGTCGCGCCATGGAGTTAC 79242 29 100.0 32 ............................. TCCAATCCTTCTCCATCGGATTCAACGCCAAG 79303 29 100.0 32 ............................. TACATTCACGCCGGTACCCCACGCAAAACTGT 79364 29 100.0 32 ............................. GGTAACGGCATGAACCATGTCGCCATTGTCAT 79425 29 100.0 32 ............................. CACACTTCGCCGATCGCCTGCATGGCTGCCGG 79486 29 100.0 32 ............................. AGTACGATGGCGACTATGCCGACTATGCCATA 79547 29 100.0 32 ............................. GCATCATGTCGGAAGCGGACGGTCCCGTACTG 79608 29 100.0 32 ............................. AGCTGGACAATCTCGCCAAAGACGAGACGGCG 79669 29 100.0 32 ............................. GCACGGCACATACTTGCCCAAATAACCCTTGG 79730 29 100.0 32 ............................. GAACGTTAAGCACGTCTACGTTGACTTTGTAG 79791 29 100.0 32 ............................. TGATACGAATCATACAGAGCCACGCCGAACTC 79852 29 100.0 32 ............................. GAGTCCACCGCGAACAGCACGTCCGACACTAC 79913 29 100.0 32 ............................. GTGGGAGGTGCGGTAGGCGCTATCGCAGGAAC 79974 29 100.0 33 ............................. TGCGCGGTGTGTCGAAATCGTAGTCGTTCGTGG 80036 29 100.0 32 ............................. TGGACGGCGAAACCGTCAAGCTCACAACTAAC 80097 29 100.0 32 ............................. TATTGGATGCGCTCGAACCGCTGCACACCGCG 80158 29 96.6 32 ............................T AGCTTATGGTGCTGTCAGCGATTACCTTACGA 80219 29 100.0 32 ............................. GCAGACCGGCGTAGCGAACACCATGCGATATC 80280 29 100.0 32 ............................. AAGGCGCGTGTCAGTTTGGATATGGCCGGACG 80341 29 100.0 32 ............................. GACTCCTGGGCGCGACGCTCCGTCTCTTGGGC 80402 29 96.6 33 ............................T CCATCCACTCGGCGTAGACGTCAGATACCAGGG 80464 29 100.0 32 ............................. GGTTGTTGAAGATTGCCTTGCGCATTTGAATC 80525 29 100.0 32 ............................. ACCACAGGCTCGGTTGTCGCACTGCATGACAC 80586 29 100.0 32 ............................. TGCACGATCTTGGTGTCCATGCCGCTCTCGGA 80647 29 100.0 32 ............................. CTCGTCGCACGAATCACCCCATACTACAAGAG 80708 29 100.0 32 ............................. ATGCGCCACATGTCCGATGATTACTGGTGCGT 80769 29 100.0 32 ............................. GATGCAACATTGACGCCGCTAGCTTTGGGCAT 80830 29 100.0 32 ............................. AAACGTCGGCATGTGATAACTTCCCTTGAGCC 80891 29 100.0 33 ............................. ATAATAGCGCCTCTCCACCTTAAAATATGCGAG 80953 29 96.6 32 ............................G CGGTGGACGTGGCGGTGGTGGCGTCCGTTTCG 81014 29 100.0 32 ............................. TGCCAACCATCATCACTGCCGACCCGCGCACA 81075 29 100.0 32 ............................. CAATTGGACAAACGAGAACAGGACGGCAACCA 81136 29 96.6 33 ............................A TACGGTTGCGCGTTGTTTTTCGAGGACAAGCGT 81198 29 100.0 32 ............................. AACGGCGGCGCGTTGGCTATGGCGAACAGCGC 81259 29 100.0 32 ............................. TTCCACGACAACCTGGATCGGCCAATCGTGGA 81320 29 100.0 32 ............................. ACTACGACCGTTATGGCCGGGACAAAGGCGAT 81381 29 100.0 32 ............................. TATACACACAACAGATTTGTTGTGCAAATCGG 81442 29 96.6 33 ............................T GGTCGGCGGTATCCTCCATGAAACGGGTGAGCG 81504 29 100.0 32 ............................. GCAATAATGCGCGCAAGGCCGCGCACTGGGAC 81565 29 100.0 32 ............................. TTGCGCCGTTTCGCTACGGGTTCCGCGTCTAT 81626 29 100.0 32 ............................. GCAGCACACCCGGAATACAAGCCGGATCCATG 81687 29 100.0 32 ............................. TGAATATTGAGCTGTGTCGTGTTGGCATTCAC 81748 29 100.0 32 ............................. AGGAAGCACGTCAACGCCACCATCGACGCGAC 81809 29 100.0 32 ............................. CAGTGAAAACGAAGAAAATCCTCGTGGACATG 81870 29 100.0 32 ............................. AGTACGAGTTCGTCCGGGCGGGCGAACGTCGG 81931 29 100.0 32 ............................. CAAGCTACATCAAGTCATTGGAGGATGCTTGG 81992 29 100.0 32 ............................. CGCGCAATTGTGGTGGGTCAGCCGAGATATGA 82053 29 100.0 32 ............................. GCGAAGCTTGCGGAATATGGTTTTAAGCTCGG 82114 29 100.0 32 ............................. TACGGCAAGGCCGTAGTTGTCGGCGACTACAC 82175 29 96.6 32 ............................T CGGATTTCGCCTACCGCTTCGATTTCGAGCAT 82236 29 100.0 32 ............................. GCGACGTTGAATCTGCCGAGCGCGTTCTGCAC 82297 29 100.0 32 ............................. AGGGGCAACGCGCCACTGCCCATCGACACCAG 82358 29 100.0 32 ............................. AGGCAGGAAAAATACGCGCCGCATACGCCGCA 82419 29 100.0 32 ............................. CATTCCCGCTGTGTCTCACGTGAACCAAACCG 82480 29 96.6 32 ............................T TATGCGACACGACTCGCCATCGCAGACCGCGC 82541 29 100.0 32 ............................. GGGTTAGGGGTAATGGAGCCCCTGTGCTTGTA 82602 29 100.0 32 ............................. GAGGAGCCACGCATCACCCCCCGTGACGTGCA 82663 29 100.0 32 ............................. GCCATCGGCTCTCTCGCAACCGGCAATGTAGG 82724 29 100.0 32 ............................. GGGTTGATCTCCTTCGTGCCGAACGCCGCCGC 82785 29 100.0 32 ............................. TGGTGGCCCGCCGATTCGGATACGCTTTGAAC 82846 29 100.0 32 ............................. GTGCTGAGCGTACGGTATGTGGTCATAGTTGG 82907 29 100.0 32 ............................. CAGATCATCGCCATCTACACCAGCCAGGAAAA 82968 29 100.0 32 ............................. CATGCGAGCGAGTTAGCCGAATCTGGCTTGTC 83029 29 100.0 32 ............................. AAACTCGCCATCGCCAACGACCTGCTCACCAT 83090 29 100.0 31 ............................. TCGGGAGAGGCGAAGAACGTGCTGATGGCGT 83150 29 100.0 32 ............................. AGTTCCATCGCCGTTTCCGGTGCTCGATGCTG 83211 29 100.0 32 ............................. TGCTGCTTCGGCGTCACCACTGGGGTAGTTGA 83272 29 100.0 32 ............................. GCCGGTCCCGATTGCTGCGGAAACGGCATATG 83333 29 96.6 32 ............................A CTTTGATGCCGACCGTGCAGGCCATGCTGCCG 83394 29 100.0 32 ............................. AGTAGAGTTTGCGCAGATTCCGATACCGGGCG 83455 29 100.0 32 ............................. CGCTGGTGCCGAGAGTATGCGACACGCTATTG 83516 29 100.0 32 ............................. CCGCAGTTCGACCTCGACTTCATCACCCGGCT 83577 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 83759 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 74 29 99.4 34 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTACGTGCGAAAAGCGCCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGGCATGTGCTATATGTAAGCGAGAAACCTCCGGTCAGATGCCAAATCTGCCATATATAAGCCAGATATCACGGTTCAGCTCAGATGAACTGGGTGTATGTCCATGCATTTCGATGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //