Array 1 29-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLN01000293.1 Salmonella enterica strain BCW_5051 NODE_293_length_287_cov_1.46818, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 90 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 151 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTGGGTACAGCCGGCCAGCGTCAGCAGG # Right flank : ATCGAATGCTTTTGTGTGTTCTGCTGCCACTTGTGTTCCCCAGATCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 244-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLN01000328.1 Salmonella enterica strain BCW_5051 NODE_328_length_266_cov_0.909548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 182 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 121 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATTCCGTGATAGCGCCACTCA # Right flank : GCCAGCTCAATTTCGCCAACCTTCGCGCTAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 141231-139614 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLN01000002.1 Salmonella enterica strain BCW_5051 NODE_2_length_304458_cov_5.36246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141230 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 141169 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 141107 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 141046 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 140985 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 140924 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 140863 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 140802 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 140741 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 140680 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 140619 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 140558 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 140497 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 140436 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 140375 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 140314 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 140253 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 140192 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 140131 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 140070 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 140009 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 139948 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 139887 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 139826 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 139765 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 139704 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 139643 29 93.1 0 A...........T................ | A [139616] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 158509-157871 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLN01000002.1 Salmonella enterica strain BCW_5051 NODE_2_length_304458_cov_5.36246, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 158508 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 158447 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 158386 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 158325 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 158264 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 158203 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 158142 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 158081 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 158020 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 157959 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 157898 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-517 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYLN01000154.1 Salmonella enterica strain BCW_5051 NODE_154_length_552_cov_0.960825, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 63 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 124 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 185 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 246 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 307 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 368 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 429 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 490 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //