Array 1 7916-9954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXQJ01000007.1 Prevotella pectinovora strain P5-60 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 7916 47 100.0 28 ............................................... TAGAATGTCTCATAATACAATAAGTAAT 7991 47 100.0 30 ............................................... TGATGAACGGAGGTTATGCCGGTACTGCTC 8068 47 100.0 30 ............................................... ACCCCCCGGTCGCCATGCTCACGGCGGTAG 8145 47 100.0 30 ............................................... AACTATGAAGATTATGTCAGAAGAAGTAAT 8222 47 100.0 30 ............................................... CGTGAGATGTCTGATAGTCATAGATAAGGT 8299 47 100.0 30 ............................................... GTGGATTGTTGGCTTTGAGCTGCTTCAACG 8376 47 100.0 30 ............................................... CACCAGTTCCTGTACGATAACCTCAACCAG 8453 47 100.0 29 ............................................... CACTTAATGATTATGAGGTATATCTATAT 8529 47 100.0 29 ............................................... TGTTACATAAGATTATAGATTATTACAAT 8605 47 100.0 29 ............................................... GAACCTGACAAGATACTGCTCGAGGGAGG 8681 47 100.0 30 ............................................... AACTCAGACTGAGGGTTCAAATCCTCAGTT 8758 47 100.0 30 ............................................... TTTTACAATCCGATATATCATGTGATGTTC 8835 47 100.0 30 ............................................... AGAATATGGCTGAGAGTGCAATTCTGATGA 8912 47 100.0 30 ............................................... TCAAGGTCAACTAACCAGACAACAAGCAAA 8989 47 100.0 30 ............................................... CTTCCGATGTTACTTATCGTCAAAACGAAG 9066 47 100.0 30 ............................................... ATAATGATGTAAGTTCCCGCCGATGGAGTC 9143 47 100.0 30 ............................................... AAATCTCGTTATTTGCAGCAACCCTCTGAA 9220 47 100.0 26 ............................................... GCAATGGCAAAGGCTATTGCGTTTAA 9293 47 100.0 30 ............................................... ATATTCCAATCAATGCGGATGTTCGCGAAA 9370 47 100.0 29 ............................................... AAGATTATGCAGATATATGATATTGTAGT 9446 47 100.0 30 ............................................... ACTCCTAACTTTTTTTAAAACACTTAGTGA 9523 47 100.0 30 ............................................... TCAAACACAACTATTGCATGAGCAGGAATT 9600 47 100.0 30 ............................................... CATAAGTTTACAATATTATGGTTTCATTTC 9677 47 100.0 30 ............................................... CCAGTGTGAGGCTTTTCAGCACCGCCTCTC 9754 47 100.0 30 ............................................... GCGGTCACTCTTGCAGTCTCGTTCTCCTGT 9831 47 97.9 30 ............................A.................. AGATTTCTGTGTAAACAAAAAAGGTACGAC 9908 47 97.9 0 ............................A.................. | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.8 30 GTTGTTGATTCTACCACAAAGGTAGGAACTTTCGAGCAAATCACAAC # Left flank : ATTCTTGTATTTTTTGACCTTCCCACTGAAACCAAGAAGGATAAGAAGGAATATATGCTGTTCCGCAAGCGGCTTCAGCGCGACGGTTTCACCATGTTTCAGTTTTCCATATATGTGCGCCACTGCGCAAGTATGGAAAACGCTGAGGTGCATATAAAACGCGTAAAGTCATTTCTCCCCGAATATGGAAAGGTGGGCATAATGTGCATTACTGACAAACAATTCGGAAACATCGACTTGTTTTATGGTAAGAAACCTCTACCTCCAAATGCTCCAGGACAGCAGCTTGAACTATTCTGAACTTTTATAAAAGTTTATCCGCATTACACACAAATTAACTCACACAAATGACTTTCTATGGTCAAATAAGTTAAGAAACCTCTAAAAACAGAAAAGAAGAATTCCGTCAACACATACAGAATTCTTCTTTCTCAACAACATTTTTTATTTTTCTAATAATCCATATAACCTATTGTAACACAGCATTTTACACAGACTAT # Right flank : TAATTTCTCCTATATATAACCTGTTGGCGGAATTAATTTAGTGCATACTTAATTCTGCCAATGGGCTTGTCGTTAATGAAGTTTACGTATTGCAGAATGGTAAGTGCACTAATTTTGCCAATGATTCTGGCAAACAAACCATTCGTTATTTTTGCGTAGTTCCTGATGACCAGGAACTGGTCTGTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTGATTCTACCACAAAGGTAGGAACTTTCGAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 20196-19122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXQJ01000155.1 Prevotella pectinovora strain P5-60 contig155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 20195 37 100.0 38 ..................................... GACTTTTCTACATTAGGGACAGTTATTTCTACTATTTG 20120 37 100.0 36 ..................................... GTCTGCACGCTGCCACTCTCCGTGGATGTCCTTGAG 20047 37 100.0 36 ..................................... TTATTAAGCTTGTTGATAGCAAAATCAATAAGCTCA 19974 37 100.0 39 ..................................... ATATCGCGTTTCTACAATCCAACTTTGTTTCAAAGTCGA 19898 37 100.0 37 ..................................... TGCGTACACCATCTGCACGTTGCCATCAAAGAAATTA 19824 37 100.0 36 ..................................... TCAGTAGCTTCAGTAGAAAGCTCATACTTAGAAATA 19751 37 100.0 37 ..................................... ATCGTACCTACCGAAACAATGCCAAACATTGATGCAA 19677 37 100.0 41 ..................................... TCTAGATGAACCTGATGATACTGACTTGAATGTATTACCAT 19599 37 97.3 36 ..C.................................. CTTTCTTCTTGTAGTCATACTTAACAGCTGACACGG 19526 37 97.3 35 ..C.................................. AACATTGGCACAAGCAGCCCTTCAAAATTAGACTT 19454 37 97.3 35 ..C.................................. TGAAAGTCTATTGCTGTATAAGCTTCTTCATGGTA 19382 37 97.3 39 ..C.................................. AATGATGTATAAGTACCTATTACCTCTCCATCGTCCACA 19306 37 97.3 38 ..C.................................. ATTCCTTATCATCACCAACCATTCTTTCACCATAAAGG 19231 37 97.3 36 ..C.................................. TTTTTTCAACTTCAAACATAGCAATGTACTTATTTA 19158 37 97.3 0 ..C.................................. | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 98.7 37 CTAAGAGAGCATGGTCCAATAAAACAAGGATTAAGAC # Left flank : ATATTATGAGACACCGCCATTCTAAAAACTTCTGTAAACGACAAACACACATCAACTCAACTACCAATGTATATTAGAACTACCTAAAAAAAGGACGAAAGCTGATGGTATTTTATGATTCATAGGCAAAAGTAATAGATTTTCCGATTTCTGTTTAGCACTTGCAAATATAAAAAAAACACTATCTCAAGGCAAGTTTTTCCTTTTGTTTTTTCACAAAAACATAAAACAGGCAAAAAGAGGAACATTGATTCGTATACTGGTTATGAAAGGACAGTTAACATTTTTCTCTTTGGGCATTTACATTTTTTTTATTATTTAATGCCTCCTCATGCTATTGTTGAAGCATTTATCGTATATTTGCAGTCGAAAAAGGTACATTTTTTAGGTCTTCAAAAGTTAAAATATATATAAAAACCCCTGTAATATGCTAAATAACAAGCATTTACTATTTTTGC # Right flank : AAATGTTTTTGCTAACTTATATGCGATAAACATTCAGAAAACTTTGATTGTATCGAATTAATACATATATTTGCGAACGATAAAACTTAAATCTGAAAGTCTGACTTTGTTCAGACTCCCAGACTACTATTTTTTGAGGAGGACTGGATATGGATGATGACACATTGAGAGCGAAATGCCAAGCAATGAGCGCAGCTTCAGACCTATACAAGGCGAAAGACTATGTGAAGGCTTATGAAACCGCAAAGGAAACGATAGCAAACGATGTAGTACCTGAAACCTTCAATTTGTCGTGCGCTTGGATTATATACAGATACTTAAAATAAATGGCCGGTAACATCTCGGACGAAAACATCGAGGTTTACCCCAGTTCGGGATAAGAGATACATTATCGAAACCATTAACGACATGCTGAAGAATACGGCACAGATTGTACACTCACGCCATAGATCTGTAAGCAACTTTATCATGAGCCTTATTTCTGCCTTGGGAGCATATTG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAGAGAGCATGGTCCAATAAAACAAGGATTAAGAC # Alternate repeat : CTCAGAGAGCATGGTCCAATAAAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 12766-14391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXQJ01000080.1 Prevotella pectinovora strain P5-60 contig80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12766 37 97.3 35 .........T........................... ACTTTCCGATAATACACACACCCAATCAGGACGGG 12838 37 97.3 34 .........T........................... TTGCCTTTCTTCAGATTCTCGAATGTTGTATCGA 12909 37 97.3 33 .........T........................... GCTACGTCCTCCGGTCTACAGTCGCTGCGGTAT 12979 37 97.3 37 .........T........................... TATCCTACAAATGTTTTGTCAACTTGTACGACAATAT 13053 37 97.3 37 .........T........................... CATGTGTCAGCATCATATAATTAAATACTGCCTCAAA 13127 37 97.3 36 .........T........................... TCTTCACTTCCTTTAGGGACAAAAGTTCTCTTTATG 13200 37 97.3 35 .........T........................... CCTATCGTGACCCAGTTGTTGAACTCGGAAATTGC 13272 37 97.3 34 .........T........................... TGCTACAAGGCAACGCATTGCGTATTTTTCTGTA 13343 37 94.6 37 .........T.............G............. TCAGCTACATTTACAGCTAACACTTTGATGGTGTGGT 13417 37 97.3 37 .........T........................... TGTACGACAATGTTATTATCGTACTTTGTTGAAAGGA 13491 37 100.0 36 ..................................... CTTCTTTGTCTTTGTCGAGTGGATTGACGTCCGTTA 13564 37 100.0 33 ..................................... TTATTTTTAATTATAATAAGAGCAATTCTTACA 13634 37 100.0 36 ..................................... TCAATTTTGAAAAGTATTTCAAAGTTCGGGCTAAGT 13707 37 100.0 37 ..................................... GTCGTTCTGGTAGACCTTTACGGCGGTTTGTCTACGG 13781 37 100.0 36 ..................................... ATACTCAACTGAGTTGTTGTTACGAGTTCTAGTATT 13854 37 100.0 33 ..................................... TTCATTCGATTGTCATTGTCTACAAACATGTTA 13924 37 100.0 34 ..................................... AGTTTTACCAGTTCCGTAGCCTCCCTCTAACAAC 13995 37 100.0 35 ..................................... CTCCGGCTTCATAAGCTTCACGTTGATTTCCTTTA 14067 37 100.0 34 ..................................... ATTGTGTATTTTTCCGTATCTTTCTCTGTACTAT 14138 37 100.0 34 ..................................... AAATACTCCATAAGGACAAGGTCCAATATTCTCA 14209 37 100.0 38 ..................................... CAAGTTTATGAAATTCTTTGGCGTCAGAATATCTAAAA 14284 37 100.0 35 ..................................... GTAGAAGTATCTACTTTGCCGTTGCATTGTAATGA 14356 36 78.4 0 ........T.C.T................-C...CCA | ========== ====== ====== ====== ===================================== ====================================== ================== 23 37 97.8 35 CTCCGAGAGCATGGTCCACTAAAACAAGGATTAAGAC # Left flank : GGAATAAAACAGAAGAGTGATCTGTTCAACAAGATGATGATGTGCGACCCCTATCTCAATGCGTTACGTGCCGTGTTTGGCTTCGCGCTCACCTGTCATAAAGTGCAGGGAGGAGAATGGGATAACGTCTTTCTCGATATTCCGAGGTCTTTCCCCAAGCGGGAGAAGCCTTATGTGTATCAGTGGGTGTATACAGCCATGACCCGTGCCCGCAAGGAACTGTATCTTGTAGATGATTTCTATATCATGTAGCTTAGATATTTTTTCCCCAATCGGTTGTCAAGGTTTCCTCGGAATGACCGGTTTGGTTATAATCGCTCTTTGACATTCTGTTTCTTTTTGTGGATATAGTTGGTTTTTATGAAAATAAATTGTTTCTAATTAGCTGCATATTTTGTATTTTTGCAGCAGGAAAGGTACATTTTTTCAGTGTTGAAAAGTGAAATATTGTATAAATTACATTGTAATCTATTGATATATAAGTCTTTAAGAATTTTGCT # Right flank : ATAATCACTCTTCCCCAAAATCACAATCCAGGCGGGCCTGATGGCCGATTAAGGCTAAACCAGGCGTCATTACCAGTATTTGGCTCCTCTTCTATCAAAAAAAAATGAATTTCCTTTGCCTCTCTCAAAGCTTTCTTATAACTTTGCCCAAAGTTTTGCGCCAGACTGTTCTGGCTGTTGTTTAACCTATAAATCTGAAATAAGAATATGCCATTTACGAACAATGTCATGATTGTCCGTCACAAGCTGTTGACCGAACTTGTGAAGCTATGGAAAAATGACGAATTAGTAGACCGCATTGACCGTCTGCCTATCCAATTGAGTCCCCGCCGTTCAAAACACGAAGGACGTTGCTGTGTACACAAAGAGAGAGCAGTATGGAGATATAAGTCACTTCCGTTGTTGGGCATGACGATGGAAGACGAAACCGACGAGCTGACACCTCTCTCAGAATTTGCTTTCCGCGCCATGAAGAGAGCCGGCAGCGGTGCGCCGAGAGA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGAGAGCATGGTCCACTAAAACAAGGATTAAGAC # Alternate repeat : CTCCGAGAGTATGGTCCACTAAAACAAGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 28084-27390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXQJ01000080.1 Prevotella pectinovora strain P5-60 contig80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28083 36 94.4 30 ..............GA.................... CGTGAAACATTGTGCCTATTTCTTGCACAC 28017 36 94.4 30 ..............GA.................... AGGATTTTCATAATAATGTCCTCCATTATA 27951 36 100.0 30 .................................... ATATTGACAGTAACACCGTCAATGTGTGAA 27885 36 100.0 30 .................................... TTGTTTTGGTTTCATAGCCAAAAGCATTTG 27819 36 100.0 30 .................................... GCTAGCTGGTGGCGCAATGTATTTAATTCT 27753 36 94.4 29 ..............GA.................... TAGGCAAAGGAATGCTAATAATAATTCGG 27688 36 100.0 29 .................................... TAGGCAAAGGAATGCTAATAATAATTCGG 27623 36 100.0 30 .................................... GTATAAGCTTAAAGCTATATATTAAGAGGT 27557 36 94.4 30 A.............G..................... CAGCTTTAGTAGGATTATTTTTACTCATAA 27491 36 94.4 30 ...A..........G..................... GTTGAAATTGTTCATAATTTTACACGTTTT 27425 36 94.4 0 ......................A.T........... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 96.9 30 GTTGTGGAAGGTCCAGTTTTGAGGGACTATTACAAC # Left flank : ACATCATGGAAGAATTCAAGAAGTATGACCAATGCCGACCTGAAATATCGAGCATCGTATTCAACTTAGAGAAATGGGCATTCGATACTTATCCTGAGTTGCCGGCGAGAGTTGACAGAAAAGAAAAAGTTGATTTCTGGAGCATCTTAGATGTTCTCTCAAACAACAAGGATATCAATAATGAGCAAAGTTACATATTGCGAAAAATCAGGAATGCTTTCGATCACAACAACTATCCAGACAAAGGTATTGTTGAGATAAAGGCTTTGCCTGAAATTGCCATGAGCATAAAGAAAGCATTTGGAGAATATGCCATCATGAAATAGTTCCATCCTCTGGTGTCATCAGATATATGATGGCACCGGAGGAGGAAAATAACAGTACTTATTTTGGCAGAACATAAAATATTTCTATTTTTGCACTACCATAACATTCAAATATTTCATTTATGAAAACAAAATCAATTAAAAACATTGATTATAAGGATGTTATCGATTGTA # Right flank : ACCGGGAATGGTTCCAAATTTGAAGGAACCATTCCCGTTTACTTTTTCCTTGCCATACCCATCATTTCATTCTATCTTTGCAGCGTCAATCATCGGAACCACCCCGCTGATTGACGCTGCAAAACGTTTGGTGGCAACTCGAAATTGAAATAAAAAATGGAGAACACAATAAGACTATAAAAGCACATGACCAAGAGGTTACAGCTGATGCGGAATGGTTCCAAAACCGAAGGGACCAATGTTAACGCCAAAACCTTTTGCTATCATAAGAAACTGGCATACCTTTGCTCCACCGAAACCTCCACGGTGTGTACAAGAATGGAGGCTCACCAAAACAAGAAAACTATGACAGAATCAGAAAAAGAACGTTGGCAGCTCATCGGTGTGATTGCAACCGCAGTCGGTACCGCTATCGCAAGCTACTTCGCAGGAAAAAAGTAGAGCTATGAGCAAGAAGATAAAGGTTCTCCACCTACACGAATTGTTCCAAATAGGTGAGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGAAGGTCCAGTTTTGAGGGACTATTACAAC # Alternate repeat : GTTGTGGAAGGTCCGATTTTGAGGGACTATTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //