Array 1 37849-38416 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAHI01000013.1 Rahnella variigena strain CIP 105588 contig_0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37849 28 100.0 32 ............................ GCCGTCTGCGTTCCATTAACGTCGATGAGTTT 37909 28 100.0 32 ............................ ATACCCCGGCGGCAGTCCCATCGGGATTGTAA 37969 28 100.0 32 ............................ TTCATGACCCGCACTGACATGCAATCCTTCGG 38029 28 100.0 32 ............................ AGACACAGACTTACAACGCCCGGGCGCTGAGC 38089 28 100.0 32 ............................ TTCTATGCTCGTTTCAGTCACCATCCGAGCTG 38149 28 100.0 32 ............................ GTCTGACTGTAATACCAGAGGGCGACGAACCC 38209 28 100.0 32 ............................ CATACTTAATGTAGATCCGTTTTCGTCTCTCA 38269 28 100.0 32 ............................ GCTGCAAGATACTGATCGACTTCAGGCCCTTT 38329 28 100.0 32 ............................ GTGGTGGCGATTCAGGCAAGGTTTGCAGATCG 38389 28 75.0 0 ...........C.........CGC.TGC | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATTTTGAAAATTGAACCGGCGGCCGATGGTTCGGCGTATCAGGATTACGTGCTGACCGAAAAGGGGCTGGCGCTGCAACCGGTGCTGGTCGCGCTGGGGCAGTGGGGAAGTGAATACCTGTTTGAGGAAGGCGAAGCCTGTACGCAGCTTGTGGACAATGAAAACGGCCAGCCACTGCGCAAACTGGAAATCCGAGCGCAGGACGGACGGGTGCTGGAGAGCCGGGATATTACGGCGATCATTCCTGAAATCTGATACAGAATTCGGGCAACTCCCTCCATTTCGCACGGAAAAGGGCAAATCTCGATCTGCTCCCTCACCTGCGAAGGGGAGGGCTGGGGTGGGGTATTAATGGCATTTCAGTCATAACCCTTTTTTTCGAGCTGTCTCTAACTCTTTGATTTTAATGAATCACACGAGCCACACAAAAAAGAGGGTTTTTTTGGCAAAACAGGGATAATCTCTTGCAGTTCAAAGCATAAACATTAAAACTCAACT # Right flank : CAACTCACTGCAAACCATAAAAACTCTCTGGAAGCAGTATCTCATCCCAGCATTTTGCCCATTTTCTATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAACCTGAACCCTCATGGCGGAAGTTTTAATTTCGCCATCGCTTTGTATTACCAGAAAATAACAATTTATTACCGTATATTGTTTTGGTAACTCGGGTGGGGCAGCTTTAGGGCTGGTCGGAAAGGGTAACCGATATTCCTACCCCCGCCTGAGTTACCACCTTAGCGCAGGAACTTAAGTGGTAGCGTGATACGCAATCTAATATTAGGTTCTGTTCAAATGGATATTACTCTTACAAACGAAACATCCCCAGATTCATGGACGCTCACCGATCGCTGTCGTTTGCTGCATGAACAAAGACTGGCATCAGGCTGACATTATTGCGGCAATAAAAAAGAAGGGCACCACGATGGCGGCGGTTTCACGCCGCGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 91495-92064 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAHI01000013.1 Rahnella variigena strain CIP 105588 contig_0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 91495 28 100.0 32 ............................ ATCAGGGTGTGAACGTGATGCAGGAATTTGCT 91555 28 100.0 32 ............................ AGAGGGACTGAGCCGCGAAGAAACCATGGAGT 91615 28 100.0 32 ............................ AACCTCACGCACGAACCAGATGGCCGTAGAGT 91675 28 100.0 32 ............................ AGATTGACCATGCGTAAGTAACACCAGCAATA 91735 28 100.0 32 ............................ CGAACGAGTCCAAAGATGCTCGGTTCCTTCGC 91795 28 100.0 32 ............................ TAATGATTCATACCAGTCAAATCCATCCAGAT 91855 28 100.0 32 ............................ ATCACAGCAGCTGACGTTAAAAAAACAGTGCG 91915 28 100.0 32 ............................ GCTCTCAGCGCCGTTTTAAGTAGAGTTGAAAG 91975 28 100.0 32 ............................ GATCACCGCATCGCCGTAACCAAGGATTAATT 92035 27 92.9 0 .......................-.C.. | GCC [92054] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGACGAAAATTTAAGTCTTTAAAGTCAAGGTCGTGGGCTCGCCGCCCACACTGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTATCGCAGGTATGACGGACATGTTCTGTCACCGCCGCGTGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCTCTCGGTCCTGAAGCCTACGGTCTTCAGGCCGCTCCGTTCAGCAAGATTTTTAATCACGCCATTCCCGATCGAATAAAACCTTCGTTCTGATTCTTTCCCAAAATCCAATGCGGAAGGGTGTTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGCCGGGATGGGGTATTAATGGCATTTCCGAACTGACCCTTTTTTTTGCGCCTCCGCTAACTCATTGATTTAAAATACTCACTAAACCTCTCAAAAAAAGAGGGTATTTCTCCCCAAACAGGGATAATCTTTTGCACTTCAATGCGTAACCCTGAAAACCCAACT # Right flank : ACTTACTGCAAACGATAAAACTCCTTGGAAGCAGTATCTCATCTCCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTGCTCGCTGCGGCAAAATCCGCAGTCGGGTGTAGGAACCTGATGTGCTAGATAGTGCATTTCACATGCGCTACGTTTTGTTTCATCATTGAAAGTGGATTTAAAACACTTCTGTTATTATCAATGGTGACTCAGACGAGGCAGCTTTCGGGCTGATCGAAAACTCCAGTACATCGATTCCTACCCTCGTCTGGGTTACCACCAAATGTAGGAATTTGGGTGGTAGCGCGTGATACGGCTCTCTGGAAATCAACAAATGACTATCACTAATAATTCTGAAACATCCCCCGATTCATGGACGCTCACCGATCGCTGCCGTTTGCTGGCGAATGCGCTGGTGAACCCGCAAAACAGAGGTTCGCAGGACAGACTTTGCATCATGCTGCAAAACGAGCTCGAATACCTTGAAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 94886-95093 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAHI01000013.1 Rahnella variigena strain CIP 105588 contig_0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94886 28 100.0 32 ............................ GAGGACTTCAAACAGAAGTAATGGTGAAATGG 94946 28 100.0 32 ............................ TCAAGGGGAAGCGACAGCAGTTGGCTCTCCTC 95006 28 100.0 32 ............................ GGGCCGCCGGTGTTACATGTTCGCCATCATCC 95066 28 92.9 0 .....T.....T................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGGACAGGCAGCTTAGAAA # Left flank : AAGAGTTAAAGGGACAGGTTCTTCGTAATCACTGCCACATGAACAAAATGCAAAGATTGAAAATCCTGATGCTTCTGCTGGCCAGTATTTCTCGAAATCAAAGTTAGCGGGATCTACTTTGAATTTATCAAAATACTCTTTCATGATGTCGTCACCTGTTTCACACGCCCACACATAATCGCCGGTAGAAAGACTTGTATTAATAGTGACAGGCCAGCGTTTTTTAGAAAAGAAACGGGGCTGATTAAAGCGTTCATTGTACCAGTCAATGATGTCCTCATTGCTTACCATAGGCGGTCTTTCTCATTGGCAATCGTGTTGTAGCGGTTCGTCTCTTTTTAGGCAATGTTAGCTTAATTATCCTCAGCTAACCCTCTTTTCTGAGATATCTCTAACACATTGATTTTAAATCTCCGAATCACCCATCAAAAAAAGAGGGTATTTCTCCCCAAACAGGGATAATCTTTTGCACTTCAAAGCGTAACCCTAAAAACCCAACT # Right flank : ACACAGGTAAATATCATTAAGCTTTTGAATTTACGGGAGTACGGGCATAGGCAAAGCCACTTGCGCGACCTCAGAGGGATCATTTACCGAAGAGACTGATTTAGCAACAGAATCTGTCGCAAATTATCTATAACCAGACTGACGCATCCGGGCAGTGACCCCGGACTTGTCCAACCGCTCACACACCAGGAGTAAACACCTGGCATTCAATAATGGAGATATATGAAAGCAATAATGACAGTAGACAAACTTGAATTACGCAATATTAAGTCAATACGAGATTCTGGAAAAATAGGACATAACTTTGATCTGGTCGCAAAGTTGAAAGTTCAGTCACGCTCTATGGGCGCATTTTCTGGCGAAGGTATTGATTGTCCAGATTTACAATGGATTGAAACAGTAGATTGGTACAAGTTAGATACTAATACAGACAAATGGATCCACGTAGGAACTAATCCTAATAATAAAGATTTATACAAAGCAAACCCAAAATCGCAAAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 104971-106077 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAHI01000013.1 Rahnella variigena strain CIP 105588 contig_0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 104971 28 100.0 32 ............................ TGAAGAACGCCAGTCGCCAACTTGGTATTGAG 105031 28 100.0 32 ............................ AGTCACAAAAATGTTGCCCAGGCACTTCAGTT 105091 28 100.0 32 ............................ GCACTATCTATAAAGGGGGCCGCCTGCGTGAG 105151 28 100.0 32 ............................ TCCAGAATATCGACAAAGCGCTGAACGCTGCG 105211 28 100.0 32 ............................ GATATGAAAAGAACTCAGCGGGAAATTGATCA 105271 28 100.0 32 ............................ CGCGTTCCCATCGATGGCGAGCTATTACCGCT 105331 28 100.0 32 ............................ AGGACACGCCGATCGCTCTGCAAACACTGTCG 105391 28 100.0 32 ............................ TGGAGCGCTACGGTCATCAGCCGCGGCGTTAT 105451 28 100.0 32 ............................ TACTACGGCCTTTCATGTGACCACTGCGAGCT 105511 28 100.0 32 ............................ ATTTTTAATAATTCATTGAGAACGTTATTTAA 105571 28 100.0 32 ............................ GTGCTCTTTGAGGCGCTGAAAGAAAACGTACT 105631 28 100.0 32 ............................ CTGAGTTTTACGTGGTTGAGAACGTGCCCGGA 105691 28 100.0 32 ............................ TGTTTGGGATAGACAATTCACCGTGGTCAAGC 105751 28 100.0 32 ............................ CTTCAGTAGAAGCGAAACCGGCAGGGTTTGAC 105811 28 100.0 32 ............................ TTGAAGCGAAAATAGTAGATGTGAGTGGCGGG 105871 28 100.0 32 ............................ ATTACATCATCCACCTGCTGTGAGGTTGGTGC 105931 28 100.0 32 ............................ CGTCTACAGTAAAGGCACGGCGTTAGCCGTCG 105991 28 92.9 32 ...........T.C.............. ACCCCACAGCCAGCCCATACAGAGCAGGTAAT 106051 27 82.1 0 ...........T.C.....C..C.-... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAAGCTCTGGTTCAGGTTTAAGGTCAAGGTCGTGGGTTCGCCGCCCACACTGGCCCAGAGACCCGCAGTCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTGCCGCAGGCACGATGGACATGTTTCGCGGCTCCTGTGCGTGGCGCAAAATCTTGCCGCGTTGCGGTGCCTTCACTCGGTCCTGAAGCCTCCGGTCTTCAGGCCGCTCCGTTCAGCAAGATTTTTGATCACGCCAGTCCAGAACGAATAAAACCCTCGTTCTGATTATCTTGCAAAATCAGATGCTAAAGGGAGATCTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGTCGGGATGGGGTATTAATGGCATCTCAGAAATAACCCTCTTTTTGGGGCTGTTTCTAACTCATTGATTTTAATAGTGGGTAAAAGCTTGAGGAAAAAGAGGGTATTTCTGCCTAAACAGAGATAATCTTTTACAGTTCAATGCGTAAACTTGAAAACCTAAAT # Right flank : ATCGCAGGTCAATGCCGGTGGGCGCGTTCTGATGACTGAGAACATGCGTTGTAAAATTAATGGATAATAAAATTTGATTAAAGGATGCCTGCTGTTCATCATTATTAATGACAGCAGGCATTTATAAAAAATCATCAGGAGTTATTATTTCGTGCAATAAACTCTTGCTTCGCGAGGTGTGTATATTCCTAAAGTGACAATGCGCAGGAATACATCCATCCCTGATTCCTGAACTTCAGTACGAACAACTTTATTTGCGCTACCACAAATTTTTGCTGCGTCTATGGTATGTTCTTGTCCAATGCCATTAACGAAGAAAGCTTGTCTGGTGACATGAGCGGGTTGCTCTGCAATACCATCATTTAATTTGAATGTCTGTTGAGCACAGCCTGACAATGCAGTAACAGCAAGAACCGAAATAATAAATTTTTTCATGATAACTCATGTTGATAATAAAGAAGTGAAATCATATATTCTGGCCTGTTGATACTTTTACAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //