Array 1 9228-3371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAWJ010000058.1 Methanogenium sp. MK-MG MKMG_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9227 32 100.0 34 ................................ CCTTCGCCATGCACGATGCCGTCACGCATAAACT 9161 32 100.0 36 ................................ CTAAGCAGACTGATTAGATCAGGCCACTCCTTCCCG 9093 32 100.0 34 ................................ CAGTACATCAAGAAGACCTTGGAATCGGGCCCGG 9027 32 100.0 33 ................................ TCGTCCTGATCGGTCATCAATGAGATCAAAACC 8962 32 100.0 36 ................................ AGGCAGATGTAATGCCTTTTGGATATCGGTTGCTAT 8894 32 100.0 34 ................................ ATTTTAGTTACACGGTGTTATTCAATAATGCTAC 8828 32 100.0 35 ................................ CACTGGCAGCTAAGGGTGGTGTGACAGAGGAGCAT 8761 32 100.0 37 ................................ GTGTGGTGTCGTGCCGTCCGTGTTCTGCCCTCCGGTG 8692 32 100.0 34 ................................ TCATCAGGCGGTTGCACTGCGGACAAAAGTGAGC 8626 32 100.0 35 ................................ CATTACCTCGTGTTGAGTGCGTCCCGATAGCGGGC 8559 32 100.0 35 ................................ CATTACCTCGTGTTGAGTGCGTCCCGATAGCGGGC 8492 32 100.0 33 ................................ CTCGACGCCGTAGGACAGGAGGGCATACCATGT 8427 32 100.0 35 ................................ TTTTCGGCATCAAGCGCCGCCCGTGACAGGTAATA 8360 32 100.0 35 ................................ CCATGGGGCACCCCACTGTTTGATATCGGTCTCGC 8293 32 100.0 36 ................................ TCAAACCGCATGGAATCGCTACATGTTGCTGCTGAC 8225 32 100.0 34 ................................ CGGGGAGAGCGTGCCCCGGCCCGGCCCATCCGCG 8159 32 100.0 33 ................................ CTGGACGCCGGTGTCCTGGCGTCTGTCAACAAC 8094 32 100.0 33 ................................ AGAAACGATCTTGAAGAGGAGGAGGAGGAAGAG 8029 32 100.0 34 ................................ CTGGACGCCGGTGTCCTGGCGTCTGTCAACAACC 7963 32 100.0 35 ................................ ATCCCATGCGGGGTATGCAGAGGGTTTAGAGGTTA 7896 32 100.0 34 ................................ TTCAACCACAGCGCCTGTAAGTGCCTCGGGTGTG 7830 32 100.0 34 ................................ ACCTAACCTCCTGCTCTTCTGCCTACCGGTCACC 7764 32 100.0 34 ................................ ATTAATAAGCTTGTACTGCCATCTTTCGACCAAT 7698 32 100.0 33 ................................ TATACCTGCGACAGCGAACCCGTCCGGCGCCGT 7633 32 100.0 33 ................................ GTCCACGACGGTGATTTCAGGCGGGCCCGGAAA 7568 32 100.0 33 ................................ CTTACATGCAGCTTCAAACTCACTGCCATACAC 7503 32 100.0 33 ................................ CAAGATCACAGATAGAAGCAGCCGCAAAGATCG 7438 32 100.0 33 ................................ TGATACCGTTTTGCCATACCCTCAATCAGTGAT 7373 32 100.0 35 ................................ CCTGCAGAGGTCTGTCCTAAATTGGCTATATACAA 7306 32 100.0 34 ................................ TCTACAGAACCGGAGAAAACTAAAATAGCCTTAA 7240 32 100.0 33 ................................ ATCCCCACTCTGCCAAAGTCTCAGGATGTTTTG 7175 32 100.0 34 ................................ AACCCGTTTGCACTCAACGCCATACGGAAAAAGT 7109 32 100.0 34 ................................ ATATTGATCTCAGTCTGCACAGAGTAATAATCAA 7043 32 100.0 33 ................................ ATTGTAGGACATTTGTAATATGTGGTATGACAT 6978 32 100.0 35 ................................ CATTGAATCGCTGAATAACTCCGTTATCCTGTTTC 6911 32 100.0 36 ................................ TCGGTTTCGGCGGCGTTTTCCATCGCTTCAAGTTTC 6843 32 100.0 35 ................................ TGCTACTATACTAGGCGACCTATCATATAGTCGCG 6776 32 100.0 34 ................................ TTTGCCTTTATCAAGTAAAATAACTTGTTGGAGG 6710 32 100.0 34 ................................ CCCCTTTAACCATCCCTCAACGTCCGACTTTGAC 6644 32 100.0 33 ................................ TCTCCCGGTCGCCGTCTGTTTTGCCCACGCCAG 6579 32 100.0 35 ................................ GCCCAGTCGGCGGCAGATGTGTTCCATGCGCCAGT 6512 32 100.0 33 ................................ ATCAATATCTACCGCACCAGTGATGATGCCACC 6447 32 100.0 35 ................................ AAGCGGATGATAACGAAGTATTGCGAACAGTGTGA 6380 32 100.0 35 ................................ ACCCTTGTAGGATGGTCTGAAAGTGTAGATACGGC 6313 32 100.0 32 ................................ CGCGATGACACCGGGTCTCATAGCGCTGCCCG 6249 32 100.0 37 ................................ TTTCGGCGTTGTTTATACGTTCTTTTATTTCGTCTAT 6180 32 100.0 34 ................................ TGCACCGTTGCTCCACTTGCAGTCAAACGAGTTG 6114 32 100.0 34 ................................ TCGGGTGCAGTGTCCTCGTCAAGGATCCAGAGAT 6048 32 100.0 36 ................................ TTGCCGGTGAACCCAGTGCCGGATGTCGCTGCAACC 5980 32 100.0 33 ................................ ATCGTGGTATCATATCCGATGACGATCTTAGGC 5915 32 100.0 34 ................................ AAGCCTTTTGGAAGTTTAGCGCGGATAATAGAAT 5849 32 100.0 33 ................................ ACGGTCACTCATCCCCATATCATAATCACCACC 5784 32 100.0 34 ................................ AAAGCTGCCCGCATTATAGGTTTCACTCCAGATT 5718 32 100.0 35 ................................ TGAGTCCGTTCTAACGCATCAATGGTCCGCTTAGT 5651 32 100.0 33 ................................ CCTGCCACCGGGTCGATTATCAGAACCGTTTCT 5586 32 100.0 34 ................................ TTGGGAAAGCCTTCGGTGATTTAAAAACACAGTT 5520 32 100.0 35 ................................ AGCGGAAGGCATGCTGCAGCAATTTTGACATTTGC 5453 32 100.0 33 ................................ AATCTCACAGTCATGCGGGTTGTGCTCCGCGAG 5388 32 100.0 33 ................................ ACGCCCACATCAGCACCTCCAGTCCCGGATTTC 5323 32 100.0 37 ................................ GATTCCTTTGGTTACTACGCTACCCGCGAGGGAAGGG 5254 32 100.0 34 ................................ GCCTTAAGCGCGGCGTTCTCGTCGGTGATGTTCT 5188 32 100.0 35 ................................ ATTGTGACCGGGTAGGAGACCGCAGTAATCGCCGC 5121 32 100.0 35 ................................ ACGGTCACTCATCCCCATATCATAATCACCACCAC 5054 32 100.0 33 ................................ TTTGCTCCTGATATACTTATGCTGCGCGCCCTT 4989 32 100.0 34 ................................ CAAACGCGGGCACGGCGGGAGCCGGCGCTTTATA 4923 32 100.0 33 ................................ AATACCAAACGGGAATTTGGACCGGGCCAACGA 4858 32 100.0 33 ................................ TCCACTTTACGCACCACAAGCGCATTGACTGGA 4793 32 100.0 33 ................................ GCGGTGAGTGTATCTGACACGCCAGATACTCTG 4728 32 100.0 33 ................................ CCCTTCCGTGCCAGTTTTACGAATGCACTACAG 4663 32 100.0 34 ................................ CGGGAAAACGCCATCAAACTTGTCAAGGGCATTT 4597 32 100.0 35 ................................ TCGTCTGTGTACTCGTTCGTTCCGCTTGCCACCCC 4530 32 100.0 34 ................................ CAAAGCACCTGCAGCCAGGAAATCTTGGTGGCTG 4464 32 100.0 35 ................................ GTGGTGCAGGTGTCTCAACGACTACGCTTCAGGTC 4397 32 100.0 33 ................................ ACACAGACAAAACCTGATGCATACGCAAAGTAT 4332 32 100.0 35 ................................ GGCTCCCCCCGCTATCAAAGAAGTCATCGCAGGGC 4265 32 100.0 34 ................................ CCAGCTCCATGGCTTGTTCGCGCATGGCGTCGAA 4199 32 100.0 33 ................................ ACATCGTTAGAATATGCCTGAATTGCAAGTTTC 4134 32 100.0 35 ................................ AGGAGACAGTTACAAACCGTTACTTTACAAGCGCG 4067 32 100.0 35 ................................ CCATATGGCAGGTTTGACCCAACAACACCCGTGTT 4000 32 100.0 34 ................................ TTTGGACCGATTGAACCCGCCGCGATTGAACCAC 3934 32 100.0 34 ................................ AGCCAGGGCAAAGAAAAGATAGTGGTCAATGGAG 3868 32 100.0 33 ................................ TTTGCCAGGTATCGCAGAGTAGAGATCAAAAAT 3803 32 100.0 35 ................................ CGGAACCATACACTATTGCGGAAATCATCTGCCCG 3736 32 100.0 34 ................................ CGATCAGGTGATCGCCCAGTCGTGGCAGAGATAC 3670 32 100.0 36 ................................ TACCTTGATGGCTCGGTTCGGGTCATTCGGCGAGAC 3602 32 100.0 35 ................................ GAGTAGATACCAAACAGGATTTGAAGGATATGAAG 3535 32 100.0 35 ................................ TGGTCAGAAGGCAACCACAGATGCAGACAAAACTT 3468 32 100.0 34 ................................ GGGAAAACTCCTGCCGTTGGAAACCATGATACCC 3402 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 89 32 100.0 34 GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : TCAATTATGGCCAGAGAGTGCAGAATTCTGTTTTTGAATGCCTGCTTGACCCTGCCCAGTTTGCAAAGCTTAAACACTCTTTGTGCGGGATTATTGATGAGGAAAAGGATAGTCTCAGATTTTATTATCTGGGAAAGAACTGGAAAAACAGGGTCGAACACTTTGGTACCAAGGGTGGGTATGATCCGGAAGGGCTATTAATTGCATGACGACTGCGAACCGGAAGCGCCCAGAGAATCCCCGGCGGCTTCGCAGGAAAATTATTTTTTTGCATATAACCTTTTTGATGATTTTCCGGGTGATACGGGACCGGATTGTTATTTTAGATCCTGACGTAGCCCGCAATTAAATATTGCCCAAGATATAATTTAAAATAATTATTTTCAGGATTAGAATTTTTTTCCAGGGTGTCGATATATGTCGCAGTTTGCAATTGCCAACCCGATATCTAAAAACCAATGCGTAATTTAATATTCAAAAAAGTATAGAATAAATTTGCA # Right flank : CAGCAACAAAATATGTTTCTATCCTCTCTGTTCCTCATCGATTGTGCGTTTCTCCCTCCCGAAACGGAGAATTGCAATTCATTCATTCATTCATTTTTGGAATGAAAGCACCAATACGCCAGTTAACGCTCAAATTGCGTATAAATCGAGCGCAAACCTCCTCCCAAACAACCTTGCATCCCCCAAAAAACCCATCCCCACAGAAGCCCGGAGCGGCCCCATCACACCCGGAGACACCCCATACATCCTCTCAAAAACGCGGACAACCACGCCCCCGTAATACTCTGCAATAATCAGACAACAGCTAAAATAACGCACAGAACAGCCGTATTTTGAGGGCATCCGGGAATGGACAAAACGGCGTCCGTTTCTGCCGTATTTTTCCGAAATAACGGGGATTGGTGGCCAGAGAGAACCATCTTTTTGCATAAACACACCCGCAGCACCCGTAGCGTAAAGACGAATATCCACTGACCGGAACATACACTGACCGGAACACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8387-10005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAWJ010000050.1 Methanogenium sp. MK-MG MKMG_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 8387 28 96.4 33 ............A............... TCGATGAGGACAAAGGGCGTTGGTCTGCTTGAC 8448 28 96.4 33 ............A............... ATCAACGAAGCATACGTAACGGCGCATTACAGA 8509 28 96.4 33 ............A............... TAGTGTGGCAACACAGATCGGCGCTGGTCAGGT 8570 28 96.4 33 ............A............... AAACCCATGAATAATAGACGTTACTCCGCCGTA 8631 28 96.4 33 ............A............... TAACTCCATATCACCCTTCATTTCCGATTTTAG 8692 28 96.4 33 ............A............... TATTGGTCGGATACAAACACATACCTATGCGTA 8753 28 96.4 33 ............A............... TCCATGCATTAAACCACGATTCAAGGCTCCGGC 8814 28 100.0 33 ............................ TCCGGCGTGTTTCTCCTGGTAAACCGGCGCCCT 8875 28 100.0 33 ............................ TGGCATGAGCACCACCGCACCCAGATCATTGAG 8936 28 100.0 33 ............................ TAAACGGGTTTCGCTGCGCTTTTATACCGTAGC 8997 28 100.0 33 ............................ TCGGCCGGGCTTGACGAGCAGTTCCCCTCAGAT 9058 28 100.0 33 ............................ AGTAAACTCCCAGTTCCTGGTATCGTGTGGATA 9119 28 100.0 33 ............................ TATGCCCACGAAGACAGAGGAGGGAGGATCTGG 9180 28 100.0 34 ............................ TGCTTGGGGCAGCGGGGACCGTCCTTGCACTCTC 9242 28 100.0 33 ............................ GAACACCTGCCAGTCCTGCGGCAAGGAGATCCC 9303 28 100.0 34 ............................ GGCATACAAGTGCCCTACCTGCAGGTACTCAGGT 9365 28 100.0 33 ............................ TAGGCTGGCCACTCATGTCTATCAAGATAGTTG 9426 28 100.0 34 ............................ TTATGGCAAGAAGCCGCCGCCGCCAATACCTGCA 9488 28 100.0 33 ............................ AATAATCTGGTCATCGTGCCCGGTTTTGGCCCG 9549 28 100.0 33 ............................ TTAAACCGGGTTCGGAATTCCGGTCTTACGGAT 9610 28 100.0 33 ............................ TAGCAGAAAGTGCACGACAGTTCATGCGAGATC 9671 28 100.0 33 ............................ TTTTTCGGGATATTAAAAAATCTATTTCCAGCG 9732 28 100.0 33 ............................ TTATTCAGCCCCACCCCTAAGAATAAATTTCGA 9793 28 100.0 33 ............................ TTCACCTGTGAATCTGACATAATCGTGCTATTC 9854 28 92.9 35 ........................CG.. TTATATATTGATGAACTACAAACAACAATTGAGAC 9917 28 96.4 33 ..............T............. AGTTCCCATTACAGTCGTTTCTATCATTTGTTC 9978 28 85.7 0 A...........CA..........C... | ========== ====== ====== ====== ============================ =================================== ================== 27 28 98.1 33 GAGTTCCCCACAGGCGTGGGGATGAACC # Left flank : TTCAATGAGGGTAACCAAAGGGTGATACAAAAGAGGGTGAGGCAGGAGTCCTTGTTTCCGACATGCATCCGACCGGTTTGCACATGTACGCACGTCTTCTTTTGCTTCGCAGCATTTCTACAGAGCCTTTTTACAAGGTCTGTTTACAAGGCCTTTTTTTGATTGATTTGCTGTAATGAAGATATGAATGAATATATGAATGAATATATGAATGAATAAATGAATGAATGAATGAATATCAATAACAATTATCTGCACTAACGAGAATGGTTGAATGAGAACAATCATTTCTCAATGATTGCTGTAAGTAGATAATCCTGAAAATTATCTGCTGACGATCTCAATATTCAATCTCAGAATGTTAGTTGGTAGTTGGAGGCAGTAATTGTTTTTTAAAAATAATTCACACAAAATAATAATAGATTGCAGTTTTTGTAATACTACCCGATACTTATATGCCAAATAACTACTAAATTCATTCATTGTATATAAGTTAGAGA # Right flank : CTTTCTCTCAATCCCTGTGTGAAGAGAGCGAACGCTATGCTACGCAGACTATTCCGTATTCTTAGATTTTGGATTTTGGATTTTAGATTTTGGATTTTAGATTTTGGAACAGATATCACGGATTCCTCCGTCAACTTAGAAAACTATTCAGACCCCCGTTCTCTTTCGCCCTCCACGCTTCTTCTTTATATACCGGGCCCCCCTCTCTTTCCCTGTGCACAGCATTTCGTGCACAGGAGATGCTCTCCATGAACGAGATCAAAGAAACAGATATGAAAAACGAAACAAAAACCAAACCCGGAATCAAAACCGGATCAAAAACCGGAACAGGTCTGAATACCGTCCCTGACCAGCTGCAGGCGCCTGTCCGGGAGAATCGTATTGCAGAAGAAAATAATCGTATTGCAGAAGGACAGAGCAGAAGGAAAGGGCTGGCTGAAGAACCGGCTGATTATACCAGACGGGGAGGTGCGGATATGCAGCCCGCAGAAACACAACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAGGCGTGGGGATGAACC # Alternate repeat : GAGTTCCCCACAAGCGTGGGGATGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACATGCGTGGGGATGAACC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //