Array 1 3099325-3097926 **** Predicted by CRISPRDetect 2.4 *** >NC_017046.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 798, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================== ================== 3099324 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3099263 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3099201 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3099140 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3099079 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3099018 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3098957 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3098896 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3098835 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3098774 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3098713 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3098652 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3098591 29 100.0 58 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGCGCGTTCCAGCGCACGTTACTCGATC 3098504 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3098443 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3098382 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3098321 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3098260 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3098199 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3098138 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3098077 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3098016 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3097955 29 96.6 0 A............................ | A [3097928] ========== ====== ====== ====== ============================= ========================================================== ================== 23 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3116828-3115457 **** Predicted by CRISPRDetect 2.4 *** >NC_017046.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 798, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3116827 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3116766 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3116705 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3116644 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3116583 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3116522 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3116461 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3116400 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3116339 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3116278 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3116217 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3116156 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3116095 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3116034 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3115973 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3115912 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3115851 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3115790 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3115729 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3115667 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3115606 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3115545 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3115484 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //