Array 1 64278-63760 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWX01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4550 NODE_3_length_312805_cov_88.006524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64277 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 64216 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 64155 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 64094 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 64033 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 63972 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 63911 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 63850 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 63789 29 93.1 0 ............TC............... | A [63762] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82145-80592 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWX01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4550 NODE_3_length_312805_cov_88.006524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82144 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 82083 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 82022 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 81961 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 81900 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 81839 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 81778 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 81717 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 81656 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 81595 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 81534 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 81473 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 81412 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 81351 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 81290 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 81229 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 81168 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 81107 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 81046 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 80985 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 80924 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 80863 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 80802 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 80741 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 80680 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 80619 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //