Array 1 15132-14798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCI010000021.1 Corynebacterium macginleyi strain 160812 HBRU98_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15131 29 100.0 32 ............................. CTCAAGGAACTGTTGGACGAAATGTATTCGGA 15070 29 100.0 32 ............................. GTTGCCACGGAGTCTATCGGCGTGGGCTCTGA 15009 29 96.6 32 ............................G CGTCAATGATTTGACTCAATGCGGGCGCTACG 14948 29 100.0 32 ............................. CAGCTTGATGACTTGAACGCAACTTTGGGCAA 14887 29 96.6 32 ............................G TCCGCGATGACGTATACGGGAACGCCGACATC 14826 29 86.2 0 .......................A.AT.A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GCGAACTTGAAGTCATCGCTTCCGGTCTTAACTGGGCAGAAGAGGACACGCTGTCATGATGGTGCTGGTTGTTACTGCTTGTCCCGCTGGGCTACGGGGCGATCTGTCGAAGTGGCTCATTGAGCTGACCCCCGGTGTATTCGTCGGACGTCCTTCTGCTCGTATTCGTGATTTGCTCTGGGAGCGTACAACCGAGCTTTGTAAAGATGGGCGTGCACTTATGGTGCATTCAGCTGCGAATGAGCAGAGAATGGAGTTCAAAACTCACCGACATCATTGGGAACCCACGGATTTCGACGGGATTACCTTGATGAGGCGGCCGGCTAAGTCTAAGCAAGCACCGCGAAGGACTGGGTGGTCTCAAGCCCGACGTAACCGTAATTCTTATAAGAAACAGAAGGGCAGGTAGTAGGCCGCGCGGAGCTTCGGCAGTAGCTTCCTTAAATTACAAGTTGTACGTAGAATTGACCTAAGGCTCGAATTTCTGCTGTTCAGCAAGA # Right flank : CCTTGTTTTGGTAGCCCGAATCTACTGCTGGGCTTAGTAATCAAGATATCGGAAGGCCATCCAGCAAACAGGTTCGTCGCTTGACTGATGAGAACGGTATTCATTCCTGCTGATGCTCCACCGTCGGCTGCAGCCGCAGCATTGAACGCCATGTTCGACTGATACTGTCCTATGCCTGTGACACTTGGCTCAAGTAGAAAACCGTGCGACGCAACTTCATCGATGTGAATTTTGGTTCGCGTTTGAGCTAAGCCGAATTGTTCCGGCGGCTCCGTTCGAAGTGAAAAGGCGTGACTAACCAGCAAGAGTTGTTTCTCGTAGGACCGAGAATTGGTCTTTCGCGAGCAATTGACTAGTCTTTTGAGAGCGGGATGTCGTAATCTACGACATGAATCCCGCGTGGGGCTATAGCTCAGTCGGTTAGAGCTCCGGACTCATAATCCGTCGGTCCCGGGTTCGAGCCCCGGTGGCCCCACGGTAGAAGGAGGCGTCGGCAAGCA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27004-25880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACCI010000029.1 Corynebacterium macginleyi strain 160812 HBRU98_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 27003 36 83.3 28 A.A.AAT..T.......................... ACACCCACCTCCGCAAGCATCACAAGTC 26939 36 100.0 28 .................................... GAATACCGGATCGCCAGCAAAACTGAAT 26875 36 97.2 28 ............A....................... ACAAGACGACGCGGTAATTGCAGCAGAC 26811 36 100.0 28 .................................... CGATTAACGCCCTGAACTTGATGGATGT 26747 36 100.0 28 .................................... TCGTCGGTGAGGGCGATGAGCAGTCTTT 26683 36 100.0 28 .................................... ATTGAGCGGGCCAAGCTCCTTGCCGACA 26619 36 100.0 28 .................................... TGAAGCAGTAGCCAACCTGATTGGAAAG 26555 36 100.0 28 .................................... TAAAAAGTCGAGTCCAGGAAGCCCCGCG 26491 36 100.0 28 .................................... GAGCGCATCGACCACGGCGGCAAAGACA 26427 36 100.0 28 .................................... CTGAACCAGTCCCTCGAAGAGTCGGGAA 26363 36 100.0 28 .................................... CGGCTCGGACTAGACGATATGGTTCCGC 26299 36 100.0 28 .................................... GTCGGTAATGTCGGTCAATTCGGCACGA 26235 36 100.0 28 .................................... AATCTGGCTAATCCAATCCAGGTTCGAC 26171 36 100.0 28 .................................... CAATTAACGCCCTAAACCTGATGGACGT 26107 36 100.0 28 .................................... CCGCTGGGAGTGGGGTGCGAAGGTGTGG 26043 36 100.0 28 .................................... GTAATCCTAGCGGACATGATCCGCTATT 25979 36 100.0 28 .................................... ATGTATGCCCAGCACATAGCCGAGTACA 25915 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 18 36 98.9 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : CATCGACCCGCTTGCGTAGCTCTGCTACCGGAAGCGTGGCCACGAACTTAATCTCCGAGCGGGAGTAGCGGTCCTGGCGCGCGCCCGCGGCCTGGGCGAGGTCGTGGTAGATGCGGCGGGTGCGCAGGAGGCCATCACGAAGCGCAAGTGCCTGCATCAAGTTCTTCTCACCATCAAATTCGGTGGCCACGTTCGTGGCATTAATGGCCTGCACCAGCTTATCGATGCGCCCGGTAATACCCTCTAGCTCGCGCAAAAGCTCGGCTGGGTCCTCATCCGGGGTATCGCCCTCCTGCACGCGGACTACGGAGAGCAGGCGATCACGCAGCTCATTGAGCCGATCCTGCGCCTGCGCGCGCTCTGCTAATGCCTCTGCTAATAGCATGGTTCCTCCTTCAGGATAGTTAAGGACCACAGTAGCCGGGGTGGAGAGCTGGGGTCAATGGTTTCTGAGATACCAGTTGTAATACCGCGGGCGCATAGTTTCGTAAGATCTGGCA # Right flank : AGTGCGGCCCGAAAAGGGACGTTTAACTGGAGTTTATTGTCGATCCTGCCTTAAAAAATTACGAGTTGGGACGGTTTTTTCTCTACTTCTAGGGGTTCTGCCTTAGAAAATCTTATGGCCTTTGCCCACTGATTATCAGTGACGGAAATTATCCTGATGTCGCCACCTTCAGGGAGGGTAGTCTTGATTTGTTTGACGGTCGAGGCAATCCTAGAAGACAGTGGGAAGTATTGGACATAAACGCTTAGTTGGGATCTACAGAATCCGAGGTCTAAGAGATGGTTTCGGAATTTGTTTGCCTCACTGGTTTGTTTCTTAGACTTAACGGGCAGATCGAACATCACCACACACCACATTGGTTCACTATCCTTCGCTGGCATCAAGGATTCCTTCCCATCGGGGCACGCTTAAGTCACGAATTGCTCCCTCGACGTAGAGACCATAGTGCTGGCCAAATTCATTAAATACAGTGCTTAATGATTTTCCACCAGCTTCGAAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //