Array 1 74992-75877 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000013.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 74992 30 96.7 31 .............................C CGCACGGGCCACGCAAGTGCGCTTCGACAGG 75053 30 100.0 31 .............................. CGGGCACACCGCGGCCCGCTACCGCATCCGG 75114 30 100.0 31 .............................. CTCCTAGCAGGTTATCGGGGCTTTGGGTTCG 75175 30 96.7 31 .............................C GAACCGGCAGGCCCGGCAGTTCGTGCACGCA 75236 30 96.7 31 .............................G TGGACGCGCTGTTCTGCCTGCGGGTCAAATC 75297 30 93.3 32 ............................TG GCGACTGCCATTCCTGGATTCGCCACCAGAAA 75359 30 96.7 31 .............................T TCCTCCCCCCTACCCCCCGGCGACGACGTCC 75420 30 100.0 32 .............................. AAAAAGCTTCGGAAGGTTGCGAGCCGCTGGTG 75482 30 96.7 31 .............................G AGTCCTTGGGGAGCGGGATGATCACGGTGAT 75543 30 96.7 31 .............................G TCCCCCGGGCACTCATCGACTATGAGCACCG 75604 30 96.7 31 .............................G GCACCGCGCGCACCGCCGCAAAGGCCAGCGC 75665 30 100.0 31 .............................. GGTGCACGTTCACGTGCGCGTCGCCGAAAAC 75726 30 100.0 31 .............................. GGTGCACGTTCACGTGCGCGTCGCCGAAAAC 75787 30 96.7 31 .............................C GGGCGGCGGTCTCCTGCGCGCGCTCCCGGCC 75848 30 93.3 0 ...........................AG. | ========== ====== ====== ====== ============================== ================================ ================== 15 30 97.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : GGTGAGCCCGCCGTCGCTGGACGGCGCGCGCAGTGCCTCGGCGACCCTGGACTGGCTGCGCGCGCACGGGCACGCCGCCCTGGTGCGCGACGCGGTGGTGGTGCTGTCGATGGTGCGCCGTGACAACCGGTCCGGCGTGGACCTGGACCGGTTGCAGCAGCACTTCGCCGAGCGTTGCCGCGCGGTGGTGCGGGTGCCCTTCGACCCGCACCTGGAGCAGGGCGGCGAGGTGGACCTGCGCGCGCTGCGCCCGGCGACCCGCGACGCCTACACCGAGCTGGCCGCCGTCCTGGCCGAGGCCTTCGCCCGGACCCGCTGAACCACCGGAACCGACCCGTGCGGGGCATCACCGATGAGGAAGCCCCCGAGGGCGAGCGGGAAGGGCCGGTGATGTCAGAAGTGCTGCTTCCCGAGCCGAACCAGCTGTGGGTGTTTTGTCTGTTTTTCGGGAAGCGAATGAAACAAGGGTTGTCCCCTGGTAGATTCCCAGGTCATCAAGA # Right flank : AGCTTTTGCCTCTGTGGGGTTTCCGGCGCGGGGGTGTTTGGCGTGCTGGTGCTTTGGGTGGGTCGTTCGGCCTCACGTCCGCGAACCGCGAGGTGACGGCGGGCGGCGACGGCGGGTGCGGGTCGAGGCCGCGCCCACGACGTCCGTTGCGTGGGGGTTCCGCTGACGGTCTTGGGCTTTCTGCCCGTTTCGGGGCTTGGAAGGGCGGAAAGCCCATGATCGTTCCGGGAGGGCGGGACCGGCCCTCGAACCGCCGCGCAGCGGACATCCGGCGGTTATGCGCGGGCCTCCGGCCCCGCCCGCCGTCGCCGCTCGTCGTAACAGGTCCTGAGGGGACCCCGCCCCGGCAGAGCCCCGAATCACCCCCGCGCCGGAACCCCCATAGGGAGTCTCGGGCGCGGGGGTGATTCGGGCATCGGTGTTTCGGGGGCCTTTCGGCCTCGGCCTCACGCCCGCGAACCGCGAGGTGACAGCAGGCAGCGACGGCGGGTGCGGGTCGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5660-4168 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000025.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5659 29 100.0 32 ............................. TACTGGTGAGCACGGCGCGGTTTTTGGACCCC 5598 29 100.0 32 ............................. GCCGCCCTGCTGGCGCGGCTCGTCGAGATCGA 5537 29 100.0 32 ............................. GTTGGCGTCGCGGTGGTCGGCGCGGTCGCCGA 5476 29 100.0 32 ............................. GTTGGCGTCGCGGTGGTCGGCGCGGTCGCCGA 5415 29 100.0 32 ............................. CGGTCCGGTCCGGCCCCGGGGGGCGGGGGTCC 5354 29 100.0 32 ............................. TAGGCGGCGGCGTCGCTGGTGCTGATCCATGA 5293 29 100.0 32 ............................. TTAATGGTTCAGATGAGGGCGGTGAGGCCCGC 5232 29 100.0 32 ............................. GCGACGTGGCCGCGATGCGCGCCCACACCACC 5171 29 100.0 32 ............................. CTGTTCGGCACCGGTGAGGCCGACGCCCTGAC 5110 29 100.0 32 ............................. TCAACCTGTGGGACGGAGCGATCCGGTCCGGG 5049 29 100.0 32 ............................. TCCACGGTGGCCTGCACGCCGTCCTCGGCGAT 4988 29 100.0 32 ............................. TAGCTGGTGCACAGCTGGTAGGGCACCTCGTC 4927 29 100.0 32 ............................. TGCTCACGGAGTTTCGCGGAGATCTCGTTGAT 4866 29 96.6 32 ............................T GCGGGAATGGAGCGAAGTCGCAGCGGCCCCGC 4805 29 100.0 32 ............................. CCGCCCTCCGGTCGTGAGTGACGTAGCGATCC 4744 29 100.0 31 ............................. GCATCGAACGCCGCGCGTGGGTACGCCCCGA 4684 29 100.0 32 ............................. CCGACCATCCGACACCGTGCGGGTCTGGCGGA 4623 29 100.0 32 ............................. TTCACATTGAGTGAGCGATTTTCATCGCCGTG 4562 29 96.6 32 ............................T TCGAACAACGAATCAAAAAGGACGTTGGTCAG 4501 29 100.0 32 ............................. CGTGCTCCCCCCCATGTCGACGCTGTTGTCGT 4440 29 100.0 32 ............................. AGATCACCCGGGTGAGGATGCCGACGACGGAC 4379 29 100.0 32 ............................. CGTCAGGCCGCGTCTGCTCGGACGGTGGGGAT 4318 29 100.0 32 ............................. GGAACCTACGTGCGCGAACAGATGCAGATGCG 4257 29 96.6 32 ............................T GACTGCCAGGATCTCGAGTTCGCGCGGCGCCG 4196 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 CCAAGCCCCACGCACGTGGGGATGAACCG # Left flank : GGGTGGCATCGGCTCCTCGGGATCCTCCGGGGTGAGGGCGATTCGATGGGAGGTCTGAAAGTCATGGGTAAGGCCCCGTTCAAGACCCTCTGTCGTCAGGGTCTTCCAGGTAGCTATGGTGCTGGATGACATGGGAGGCAGGGAGCCTCCGGTGCGGGGGTCCGTGGTGCGGCGGTTCGGAGACCGGTTCCGCCCTCACCCCGGGATGATCTTGAGCTTTCCGCCCTTCCAGCCCCCGAAACGGGCAGAAGGCTCAAGATCATCGAGTAGGTCCCTCTACCGATGCCAAAGCGCCCCCGTGCCGGGAACTCCCTACTGCCTGCCTCTGCGTATCTGGTGAGCCGTTCGGTGGGACGGGTAGCCGTCGTATCCTTTACCTCTCACCGAGAATGACTCGGTGTTTCTGGCAGACTGTCTCGTAGTGGTCAGGTCTTCCTGGATGACATCCTCAGGCAAGATAACGCAGAGATAACGTTCCGCATAGTCGCAGGTCATTAACA # Right flank : ACGTTCAGGGTCCCGGAAACCAGGACGCTGAACTGTTTCGTGCCGGGTTTATTGGAGGCTCGGAACCAACGCTTCGCCTTCTGTTGACCCGACCCGCTGCCCATAGAAGCTGTCCTCGAACTCCGACGGCGGGACCAGGCCGATCTCGCCGTGCAGGCGGCGGTGGTTGAACCAGTCCACGTACTCGGCCACCGCGATCTCGAGGTGGTCCAGGTTCCTCCAGGGGCCGCGGTTGCGGACCAACTCTGCTTTGAACAACGAGTGGAACGCCTCGGCCAGGGCGTTGTCACAGGAGTCCCCGGTGGTGCCCACCGAGGCCACCGCGCCCGCCTCGGCCAGGCGCTGGGTGTAGCGCACCGCGAGGTACTGGACTCCTCGGTCGGAGTGGTGGACCAGGCCGTCGATGCGCCGGCCCACGTGCGCCCGGTTCCACACCGCCATCTCCAGTGCGTCCAGGGCCGGGCCGGCGCGCAGCGACTTCGACACCTGCCAGCCCACCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 128247-130472 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000002.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128247 29 100.0 32 ............................. GAGTTTCGGGTGCCGATCATCCTCGCCGCTCA 128308 29 100.0 32 ............................. CCAGGCTCACGCCTCCGATAAGCGGGGATTAT 128369 29 100.0 32 ............................. CACAGCCCTAAAATGGTCTTGATTGGGGGCTA 128430 29 100.0 32 ............................. GTCATCGTGGTCGGCACGCTGAAGCAGCGCTC 128491 29 100.0 32 ............................. CGTTCTACGCCACCGTCACCCGCGCCTGACCG 128552 29 100.0 32 ............................. TCTCACCCCGGTGGAGGACCCCCCGTCTGGGA 128613 29 100.0 32 ............................. GCCCGCCAGGGCAAGACCGGCCCCGAGGCCCA 128674 29 96.6 32 ............................A GTCCTCCCCCCTACCCCCCGGCGACGACGTCC 128735 29 100.0 32 ............................. CCACCGGGAAGGGGGTACGGATGACCGAGAAC 128796 29 100.0 32 ............................. GCGATCCTGGGCAACACCACGTCCATTACTCG 128857 29 100.0 32 ............................. CGCACGTGCCGCACGTCGCGCCGGGAACATTC 128918 29 100.0 32 ............................. AGCGTGGCGCGGCGGGCGCCCCGCCGCGCTGA 128979 29 100.0 32 ............................. ACGGCGACGTACAAGCGCGGCTGCCGCTGCCC 129040 29 96.6 32 ............................T GATCGTCATCCGCTACAAACGAGGCCCCCTCC 129101 29 100.0 32 ............................. GCGGTCAGCCGCGCCCAGGTGCTGGCCGCGGT 129162 29 100.0 32 ............................. GACACGGCCACCCAGTACTGGTCCTGGCCCTC 129223 29 100.0 32 ............................. ACCCCGACGCGTGGGTGCCCGAATACCCGCCG 129284 29 100.0 32 ............................. GCGGTCCCTCATTCGGGTGAATGGGTGGAAAT 129345 29 100.0 32 ............................. AGACCGGTCAGGGTGCCTGTGAGCCGCGCCCG 129406 29 100.0 32 ............................. GACGAGGAGAAGCCGGATGCTGCTTGACCCGA 129467 29 100.0 32 ............................. GCGCCGACAGCCAGCTCGTCGCCGCCGTCGTC 129528 29 100.0 32 ............................. TCTCCGAATCCGTCTCGAAAAGACCCCCAGTT 129589 29 100.0 32 ............................. CCCCGCATCTCCGTGGTGGCGTGGGTGACGTC 129650 29 100.0 32 ............................. CCGTCGTCCTGTCGATGGCGGGGCGCGCGTAT 129711 29 100.0 32 ............................. GACAGCGCGAGCGGCAGCCCGATCGTTTTCTA 129772 29 100.0 32 ............................. ATCGTGCACCGCATCACCGAGTACGTGCGCGA 129833 29 100.0 32 ............................. GCATCGCCGCGACGATCGCCGCCGCGCACGGC 129894 29 100.0 32 ............................. GCGTACCAGCGGTCCAAGGGCTTGGATGACGA 129955 29 100.0 32 ............................. GCCCGGGATGAGGGTGTCGCTGAAGCGCGCGC 130016 29 100.0 32 ............................. CAGATTCGGCTGCCGAAGTTGGCGCGGGCGTC 130077 29 100.0 32 ............................. GACACCCAAGAGGTCGGGGCTCGAGACGATCA 130138 29 96.6 32 G............................ CCGGTTTCGGGGGCGTCGCTGCCGGCGCCGAA 130199 29 96.6 32 G............................ TCGTACAGCTCTGCGGCGTCGACGGGCCCTTC C [130203] 130261 29 96.6 32 G............................ GGCTCCCCGAGCTGACCCTGGGCTGGGGCGTC 130322 29 96.6 32 G............................ GGCTCCCCGAGCTGACCCTGGGCTGGGGCGTC 130383 29 96.6 32 G............................ GCCCCACCCGGACCGCCATCCGGATGAGGCCA 130444 29 96.6 0 ....G........................ | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 CCAAACCCCACGCACGTGGGGATGAACCG # Left flank : CACCGGCAACAAGGCGATGATGGACCTGTTCGCCGACGGGCCGCTGTCCGACGAGGACTTCGCGCGATGCGTCGCCCACCTCACCCGGATCGGGCAGGACGCCGTCGACCGCTCGCGCGCCGATCACACCCTCGCCGCCGATGTGACGGCGAGCGACATCGCGTACCAGCTGATCGGACTCGTGCGTATCGCGCAGCTGCTGTCCGGCTCCGGGGGCCACGCAACCGCCCGGCACGTGGACCTCGCGCTCCGGGGCCTGGCGTCGCCGTAACGCGACATCCCCAGCGCCCCCAGCCCGGTCGGCCTTCCGCCGAAGTCCCGCCCCGCCGCACTCGACGTCCTGCGCGGATTCGCCCTGTCCGGTCTTCTGGCCGCAGGAGCAGGCGCGTGCGCCCTGCTACGTCTGGCAGACTGGCCCGCATCGGCGAGTCTCGCCTGGACGACATCCCCAGGCAGGATAACGCGAAGATAACGCCCCATAAAGTCGCAGGTCATTAACT # Right flank : GCTCAGGCCTGTGCGTCAGTAGGGAAGCTCCGGCGTGGGGGTGGTTCGGTGTCGGGAGTCCGCTGAGCGGATCGTCGGGGTGTCCTTGTGTGCGGCGGGGTGACGGGGCGGCGTCGGCGGGCGGGGGCGGAGGCCCGCGCGTAACCGCCGGACGTCCGTGACACGGGGGTTCGAGGGCCGGTCCCGCTCTCGCTCGGAATGATCATGGGCTTTCCGCCCTTCCAGGCCCCGAAACGGGCGGAAAGCCCAAGACCGTCAACGAAACCCTCACGCAACGGTCATCATGGGCGCGGCCTCGACCGGCCTCCGCCGTGGCCGCCCGCCGTCACTCTGCGATCCGCGTGGCGCGAGGCCGAAAGACCCACCCGAAGCACCGGTACGCCAAACACCCCCGCGCCGGAAACCCCCATAGTCGTCGGCCGGCCAAGCCCCACGCACGTTGGGATGAACAGACCTGGTTCATGCCAGCGGCCTGCCTGACCGACCCGCGTACGCGGGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAACCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 171456-174900 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000002.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 171456 29 100.0 32 ............................. AGCGGCCTGATCAACCTGATGCTGTCCGAGCT 171517 29 100.0 32 ............................. CCCACCAACATCACCATCACCACCGAGGGCAG 171578 29 100.0 32 ............................. GACGCGATGCGCCGCACCGAGCAGGCCGTCGG 171639 29 100.0 32 ............................. GTTTCCCACTGTGCGCCGGTGTACAGCACCAG 171700 29 100.0 32 ............................. GCGCGGCGTCCGACCAGTTCTCGATCCCATCC 171761 29 100.0 32 ............................. GACGACGCCCGCCTCACCCAGGCGGTCAACGC 171822 29 100.0 32 ............................. CGGCCGGGTCGGTGACCATCGGGTCGACGGCG 171883 29 100.0 32 ............................. CTGGCTTTCGTCGCGGACTGCAGGGCGAACGT 171944 29 100.0 32 ............................. GTTCGACCCGCAAGGAGACCCTGCCTGCTGAC 172005 29 100.0 32 ............................. CCCGCCTCGACCGTGATGGTCGGGGCGGGCTT 172066 29 100.0 32 ............................. TGGCTGCGCAGGCTGCCCCAGGTCTTGGAGGC 172127 29 100.0 32 ............................. TCGGCGTAGTACCTCATGTAGCCCCCACCCGG 172188 29 100.0 32 ............................. AGCACCGTGTCCACCAAACACATACACATCGA 172249 29 100.0 32 ............................. GCCGCCAAGGAACGCCGCCGCCTGGCGGCCGA 172310 29 100.0 32 ............................. GATGGCGAGGCCGGCTGCCGCTGCTGCGGTGA 172371 29 100.0 32 ............................. TACCTGCTCGGGGCCACCCCCGCTGAGGCCGC 172432 29 100.0 32 ............................. GGAACAAACCGAACCCCCAGGATCACACACCA 172493 29 100.0 32 ............................. CCGCGAGATGGGCATGTACCGGGTCGGCGTCG 172554 29 100.0 32 ............................. GCGCGGCAGGCGGAGTTGGACGCGTTGCCGGG 172615 29 100.0 31 ............................. ATCACCACCCCCGACCTGCTCGCCACCCTCG 172675 29 100.0 32 ............................. AGCTCGGATGCCACCGGCCTGGTCGGGTGCCG 172736 29 100.0 34 ............................. GCCGCCACACCCTCGGCTCCCGGGACGCCCCCCC 172799 29 100.0 32 ............................. ATTTTCGCGGTCGGGGTGGGGTCCCCGCGTCC 172860 29 96.6 31 ............................T GCGGGGATCTTGACCTTCGCGCCGAACTCGA 172920 29 100.0 32 ............................. TCGCTTCGTGGCGCGAGCACGGCGGCCAGCAG 172981 29 100.0 32 ............................. CGCAGGTGCCGGTACAGACCGTCGTCGTGGGC 173042 29 96.6 32 A............................ CGCAGGTGCCGGTACAGACCGTCGTCGTGGGC 173103 29 100.0 32 ............................. GCCGGCGACGGGCTCGGCCGCGGTCTTGCCGA 173164 29 100.0 32 ............................. CGTGCGGCGACGACTGGCGCGCGGACGAAGCG 173225 29 100.0 32 ............................. GGGGTGATCATCCATGACCGGCTCTTCACCAG 173286 29 96.6 32 ............................T GCATAGAGTGCCCTTGACTTTAGATGTAGGGC 173347 29 100.0 32 ............................. GTACTGATGGGGGGTTGTGTCCGCGTGCTCCT 173408 29 100.0 32 ............................. CACAGTCCAGACATTCACCGTGGCCCGGGGCC 173469 29 100.0 32 ............................. AACATCGACAAGGAGACCGACTCACAGTGAGA 173530 29 100.0 32 ............................. CCGCACAGCTCGTGGACATCGAGGAGCTGGTC 173591 29 100.0 32 ............................. GCCACCGGGTTCTCCCGCGCCTCCTCAATGGC 173652 29 100.0 32 ............................. GCATGGAAAAGACCACCGCCAGTGTGCAGGAG 173713 29 100.0 32 ............................. GCCCGGCCGTTCGGCCGGGCCTTCGTCGTGTC 173774 29 100.0 32 ............................. GTCTCGTCCTCCTCGACGATCTCGGCGTCCAC 173835 29 96.6 32 ............................C AGGCACGCCGCACCGTAGTAGGCGTTGCCCGC 173896 29 100.0 32 ............................. CGGCCGGGTCGGTGACCACCGGGTCGACGGTG 173957 29 100.0 32 ............................. AACCCGCCGCATGGGTGCGGCCACCCCTGGCC 174018 29 100.0 32 ............................. TCGACCGCCACGCCAATGAGACGTGGATCACG 174079 29 96.6 32 .............G............... GGGCCGGGGTCCTCTGAGAGGGTCACGGTTGC 174140 29 100.0 32 ............................. ACATCTCCGTCTACCCCCGCGTCCCACAGCGC 174201 29 100.0 32 ............................. GACTGGCCGAACGCCCCCCGCCTGGGGCCGTA 174262 29 100.0 32 ............................. CCGCCCCGCGACGAACTCTCCTGAGGGCAGGA 174323 29 100.0 32 ............................. AACCGACTACCCCCCACGTTTCTTCTCAGCCA 174384 29 100.0 32 ............................. CAGTACGGACCGAACCCGGTGGGTTCGGGGCG 174445 29 100.0 32 ............................. GAGACCCCGCACCCGGATCCGGCGGTGCTGGA 174506 29 100.0 32 ............................. GTGAATCGTGGCGTTGAGCCCTGGGACTGCTC 174567 29 100.0 32 ............................. CGAACGCGACCTCCTCCGAGACCTCAACACGG 174628 29 96.6 32 ............................C GCGGTTGGGACGCCCACTCACCCCCGCCGAAC 174689 29 100.0 32 ............................. GAGTCCGTCCGCGACACCACCCTCCGCGTCCT 174750 29 100.0 32 ............................. TCGACGGGGCCAAGCTCCGCACCCGCCGCGAA 174811 29 100.0 32 ............................. CCACTGGAGTAGACGCGCCGCCCACACAGCGA 174872 29 93.1 0 .........................GT.. | ========== ====== ====== ====== ============================= ================================== ================== 57 29 99.5 32 CCGAGCCCCACGCACGTGGGGATGAACCG # Left flank : CGAAGAAAACGCGGTTCATCCCCACGTGCGTGGGGCTTGGCGGCCGCGCCCAGGCCGGACCATGCCGACGGGCGGTTCATCCCCACGTGCGTGGGGCTTGGTCGGCGACCGCGCCGACCACCGCGACGCCAACCGGTTCATCCCCACGTGCGTGGGGCTTGGTCGTGTTTGTGCAGGTCAGACACGACAAAGAACGGTTCATCCCCACGTGCGTGGGGCTTGGGGCGAGCGCGAGGAGTTTCCCGCCGGCCGCCCCGGTTCATCCCCACGTGCGTGGGGCTTGGAGAGGCCGCCGCCGCTCCGGCCCCGGCTCCGGCGGTTCATCCCCACGTGCGTGGGGCTTGGCGGCGGCGGTTGCCCTTCTTGGCCAGCGCCCACGGTTCATCCCCACGTGCGTGGGGCTTGGTCAGCCGGTCAGGCCGGCGGTCCGCTGGCGCGCGGTTCATCCCCACGTGCGTGGGGCTTGGTACGCCGGGGTCCAGTACCTGGGCGCTGACGGT # Right flank : GCTGCGGTTATGGAGTTTCCGCCGCCGGGAGTTCGCTGGCCGGATCGTCGGGGTGTTCTCGTGCGCGGGGCGGTGACGGCGCGGTGACGGGGCGGCGACGGCGGGTGGCGACGGCGAGTGGGGCTGGAAGCCCGCGTGTCTCCGCCGGATGTCCGTGACGCGGCGGTTCGAGGGCCGGTTCCGCTCCCACTCGGAATGATCTTGGGCTTTCCGCCCTTCCAAGCCCCGAAACGGGCAGAAAGCCCAAGACCGCCAACGAAACCCTCACGCAACGGACACTACGGGCGCGACCTCGATCCCCGCCCGCCGTCGTTGCCTGCCGTAACAGGTCCCGAGTGGACCCTGATCCGACAGAGCCCGAAACACCTCCGTGCCGGAGGTTCTCTAACCGCGCGTAGTACTCCGAGGCGCCGGGCCCCACGCACGTGGGGCTCACTCCCGGGCTCCTCGTGGCCGAGGGGGGAGCAGGGAGGTGCGGGCGGCGCGGGCGGAGGCGTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAGCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 237219-237552 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000002.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237219 29 96.6 32 ............................G GACGGCACGGTCACACCACCTGCATCCACAGC 237280 29 100.0 32 ............................. CGCGACCGTGCTGGGCGTGAGCGAGCTCGACT 237341 29 100.0 32 ............................. CCGCGCGGCACCAGGTCGGGGTCCCGCGCGAC 237402 29 100.0 32 ............................. TGCGCCGACACGCGCTGGGCGCCATCGTTGCG 237463 29 89.7 32 .......T.................G..T GAAGGCCGCCGCGAGCCTCATCGCCGGAACCT 237524 29 89.7 0 ...T...T.................G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CACCACGGCCACGGTTCATGCCCTGGAAAAGCGACCAGGGGATTATGAGTCTGCTCCACTGTGTGTCGCCCAGTGTCAGAGTGCGCCGTTCTGTGCCGCTCTGTCCACACCTCGACCGGTTCGGGTGCCGTCAAATGCCGCCCGGTGCCGGGACGGTCCGGTACTGCCGAGCACATCCGGAGCACATCACGGTTGCGTGTTGTCTATTTGGCACCTTCTGGTAGACAAGTCTGAATTCAGGGTGGTCTGGCGTGCCTGTGAGGCCTGTCCCGTGCTTCGGCGATGATAATGATGGACTCGACAGGACTTGGACTGATGCTCCGAAGACTTCACTTCTGATCTGGAGTGAAGGGAGTGTGGACGGAGCGGGATCAAAGCTGGGCCGGGTGTTTTTGGTGGCGTGTGCTGAAGGTGAAGAGCGGTTGTTGTCCGTCGACCATACCGAAGCCAAAGTGAATGAAAAATGCTCAGGGGTCCGATAAAGACCCAGGTCAAGAAGA # Right flank : CGCTCCATTGAGCCTTTCTCATTCGGCTTCGCATAGCTGAAGTACGAGGAATGCTCGGGTGATCTCGCCTGCCCGCCATGGGCAGCAGCGGAATTTGCGCAGGACCTTCCGGTTATTCAGCTATGCGATCGCTCGTTCGTCGGGGCTGCGGAGCCGGGAGTGTGAGGCGCTCCGAGGTTTCCGGGAGTCCTTTGGATACTTCTCTTGCTTCTCGTGCGTGAGGTGAGCGTGCATTCCGTATGCGCGTCGCGCTGGGCGGTGCTTATACGGCTACGAGGAGGCTCAAGTGGAGCAGGGGGTTCAGCGGTCCGCGTCGCGGATCGATGAGGAGAACCGGCGGCTGATCGGGTGCCGGGTTGATGAGGTTCCGGCGGTGCGGGTGTGGGCTGCGCGGCTGCTCGCCGATCATCCGCGTCTCGACGAGGTGCTGCTGGTGGTGGGGGAGTTCGCGGCGAACGCGGTCCTGCACTCACTGGCCGGCGGAGACGGCGCGGAGATCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6247-8111 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000004.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 6247 30 96.7 31 .............................T CGGCAGCGCGCTCCTCCAGGGCGGCGATCCG 6308 30 93.3 31 ............................TA CGACTGGCAGGCAGACCCCGAGTAGCTCCGA 6369 30 96.7 31 .............................C TAGCCCACGCCGGATGGGCCGCAGTGTCCGA 6430 30 96.7 31 .............................A GCCTGCGGCACACCCTGCGGGCGGCGCTCGC 6491 30 100.0 31 .............................. GTAAGGTCTACGGGGGGTGTGGCCTCATTCT 6552 30 93.3 31 ............................GC CTCGGCCCCGTGGCCGCTGCGGGACGGCGCG 6613 30 96.7 31 .............................A AGCAAACTCCCATTAACCTGGGGGGATGCCC 6674 30 100.0 34 .............................. AGGGCCACGAGGGCCACCGCGCCACCCACGAGCA 6738 30 100.0 31 .............................. CGGCGATTCACGTCAACGAGGACGGCACGGA 6799 30 96.7 31 .............................C CGCGCGGGACGCACCACGTACACCGTGTGGG 6860 30 100.0 31 .............................. CCTGCCGGACCGGACGCCGTGGCAGTACGGC 6921 30 96.7 31 .............................A ACTTGATCAGCGACAGGAAAAACCTGTGAGC 6982 30 100.0 31 .............................. AATGTCCCCCCGGGGTACTCGCCCCCGCCGT 7043 30 96.7 31 .............................T GGACCTGGATGTCTCGGGAGGCGCTCCGGGA 7104 30 96.7 31 .............................C CCGGCCTGTGTCTGCGCCTGCTCCATCGTGG 7165 30 100.0 31 .............................. AGTCCTTCGCGGCGCAGAACCGCGATGGCCG 7226 30 96.7 31 .............................C AAGTGCGCATCGACCGGCGCAGATCATGAGG 7287 30 100.0 31 .............................. TCCCCGAACGGACACGGCCGCCGAGGCGGCC 7348 30 96.7 31 .............................T GGGTGACCGGGATGTGCCCGACCCCGGTCAC 7409 30 96.7 31 .............................C GCATGAACCCCCTCGACCTCACCACCACCCT 7470 30 96.7 31 .............................C ACGGGCAGGTAGACGTCCTCCGAATAGTCGT 7531 30 96.7 31 .............................A GCGGTCACCCGAACGCGCCTGGTCCGAAACC 7592 30 100.0 32 .............................. GGGGTCCTCGACTGGACTCTGGTGACGGTGGA 7654 30 100.0 31 .............................. ACCCGGCGGTGCTCCGCCGATTCATCACCGA 7715 30 100.0 31 .............................. ACCCGGCGGTGCTCCGCCGATTCATCACCGA 7776 30 96.7 31 .............................C CCACCCGACCCCGGCTCGCGCACGACCAGCT 7837 30 96.7 31 .............................T TCCCGATCCCGGACCCGTCCTGGGACCGCGA 7898 30 100.0 31 .............................. GCCACCGGCGCGCTTCGAGCTGGGCGCGAGA 7959 30 100.0 31 .............................. CCCCGAGGTCGAGGTCGTCCCCGGCTTCCTT 8020 30 96.7 31 .............................C GTGGCTTCTGGACTTCCGCAAGGTGCCGCAC 8081 29 80.0 0 ..............T......G...AGT.- | GT [8104] Deletion [8110] ========== ====== ====== ====== ============================== ================================== ================== 31 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GAGCTTTCCGCCCTTCCAGGCTCCGAAACGGGCAGAAGGCCCAAGTCCATCGAACAGGACCCTGTCTACGGACGCCGGACACCCCTCGCACAACGGACATTGTGGGCGCGGCCTCGTCCCGCACCCGCCATAACAGGACCCGAGCGGACCCCGCCCCGGCAGAGCCCGGGCCACCCTGCGCCGGAGCTTCCCTAGAACGCCCGGTAGAAGTCGAGATCTTGTGGTGTGGCCCCATCGGGCGCTGTCGAGAGTTGGCGCAAGGCGATGCGGCGCGACGCTCCATCGAACCGGCCGAGGCGTTCACCCGGACCCGCTGAACCACCGGGGCAGCCCATGTGGGTGTCGCTGTTGAGGAAGCCCTGGAAGGTTCGAATGGGAAGGCGGCAGGCGGTGTCAGAAGTGCTGTTTTCTAGGCGGAATCAGGTGTGGGTGTTTTGTCTGTTTTTCGGGAAGTGAATGAAACAAGGACTGCTTCCTGGTAGATTCCCAGGTCATTGAGT # Right flank : CGGGGGTGGGTCTGCTGATGCGGCTCACCCCCTTCCTCCCTTCCCGGGAGGGGTAGGTATTTTTGGGGAACTTTTCCAGTTCCTAGGACTTTCCGGGGGCCTGTCCTGTTGGATTTCGTCCATGAGTTCTGACGGTCCCTCACGGTCTTGGCCGGGTGGGCTTTCCGGTGCCGCGCGGTCGGTCTGGGCCAAGCACGACTACGACATGGGGGGCTGGCTTCCGCTGTGGCGGCACATGGCAGACAGCGCCGCTGTGGCCGGGCGGTTGTGGGACGAGTGGCTGCCCCTCAGCGTTCGGCGGCTGGTCGCCGACGCGCTCCCCGGCGGCGCCGATGACGCCCGCTGGTTGGCGGTGTGGCTGGCCGCGACGCACGACATCGGCAAGGCCACCCCCGCGTTCGCGTGCCAGGTCGAGGAACTCGCCGACACCATGCGCGCCGCCGGGCTGGACATGCCGCTGCACAAGCAGATGTCCGACCGCAGGCTCGCCCCGCACGGCC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17470-18354 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000004.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 17470 30 96.7 31 .............................G ACACCGACCCGAAGGAGAAGACCGTGGGATT 17531 30 100.0 31 .............................. AAACTCACCCGCATCGAAGCGCGCAAGATCC 17592 30 96.7 31 .............................G ACGGTCACTCTCCGGGGACACCGGAGAGTGC 17653 30 96.7 31 .............................A CCACCACCGCGCAAACCACCACCGCGAACCC 17714 30 100.0 31 .............................. GGCGCTTCCGGGCCGCGGCGGAGGAACTGGG 17775 30 96.7 31 .............................T AGCCCCGAACCGAACCGGAAGGAACCGGTAA 17836 30 96.7 31 .............................T GAGCGAAGATCTTCCGCGCCCGTTCGACATC 17897 30 100.0 31 .............................. GAGGGTGGAATGGCCGAGCTCGCGCAGCCGG 17958 30 96.7 31 .............................G ACGGTCACTCTCCGGGGACACCGGAGAGTGC 18019 30 96.7 31 .............................A CCACCACCGCGCAAACCACCACCGCGAACCC 18080 30 100.0 31 .............................. GGTAGGACTTGGCCACGAACCGGAACGGCCA 18141 30 96.7 31 .............................G ATCCACGTCGCGAACCGGTCGGGGGCGAGCA 18202 30 96.7 31 .............................T ACGGGATGCGCTCGGACGCGCCCGCCGCGAA 18263 30 100.0 32 .............................. GTTCCGCCAGTTCCCTGGCGGCACACTCGTAG 18325 30 93.3 0 ..........................G..G | ========== ====== ====== ====== ============================== ================================ ================== 15 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GACCGACCGGGGCCCGGACCTCGAATCCGGCCGCAACTACGCCGACGGGGTGATCTGGTGACGGTCATCGTGCTGACCCACTGCCCTGTGGGACTGCGCGGCTTCCTCACCCGCTGGCTGCTGGAGATCTCCCCGGGAGTCTTCATCGGAGGCCCCTCCGCGCGCATCAGGGAAGTGCTCTGGGCGGAGGTGAAGGAGTACGCGGGCAACGGCCGAGCACTGCTGGCCTATAGCACCAACAACGAGCAGGGCTTCGAATTCGAGACCCACGACCACAAGTGGCATCCGGTGGACCACGAGGGCCTGACCCTTATCCGCCGCCCCAACGAGCAGGGGGAAAGCGCCCCAGCGGCGCAGAAGCAGGGATGGAGCAAAGCATCCAAACGCCGCCGATTCGGAAACCGGTGAACACGCCCACGGAACCTGTGGGTGTTTTGTCTGATTTTCGAGAAGTAAATGAAATGAACACTCACCGCTGATAAACTCCCAGGTCATTCAGA # Right flank : GGTGGGGTGGGGAGGGCGACGCCGGGCGGGTGAGCGCGCAGGGGACGGCCCGGCGTCTTCGGAGCCCCGAGGTTTTCGAGGGCTGTCGGGTCGGACCGCGCTGGGCACTGGGCTCTGGGCGCTTGGTGCTCTTACGCCTCGAGGCGGCTCAGCGCTCGCACGGCCTCGCGCTCCACGCGTGAGAGATCGCGGAGGATGGTTCCGGCTTGTACGAGGAACCGCGTCTCGCCTGGCTCGCCGGCCTTCTTGATCAGTGCCGCCACTCCCCGCCCTCCGGCCGGGGTCACCAGGGGACGGCGCCCTCGTCGTCGAAGAAGCCGCCGCGCGGTCCGTCATCCGGCAGGGTGGCGAGCCGGATCACGATCGCCGCGCCCTGCTCGGGTGTCCGGGGCGCGGCGAACCCGGTGAAGTCGGTCGCCACGTAGCCGGGGCAGGCGGCGTTCACGATGATGTTCGTATCGGCGAGCCGGCGGGCGTACTGTGCCGTGATGCTGTTGAGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35066-36501 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNYN01000005.1 Actinorugispora endophytica strain DSM 46770 Ga0310471_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 35066 30 96.7 31 .............................T ATCGCGTGAGAAGGCCCTCCGCAACCGGTTC 35127 30 96.7 30 ............................G. CTCGTCGGCGCCCATGTAGTGGGCGACCCC 35187 30 96.7 31 ............................A. TGGGTCCAGCAGTCGTCCTCGGCGGCTTCGA 35248 30 100.0 31 .............................. CACACTCCCCGCTGCGAGGCCAGGCGGGGAC 35309 30 96.7 32 .............................A GGAGAACCAATGACCAACCTCCCCCCCCGGCC 35371 30 100.0 31 .............................. GTGCTGACGATGCTCGCCGACGTCCTCGTCG 35432 30 100.0 31 .............................. CGGCAGCGCGCTCCTCCAGGGCGGCGATCCG 35493 30 96.7 31 .............................A GCAGCAGCGACCCGGCGGCCGCGATCGTGCT 35554 30 93.3 31 ........T....................G GCATCCGGGGCGCGATCTCCGCCGCGTGGTC 35615 30 96.7 33 .............................G GCGCTCTTCGCCCTGGTCAGATATCGAACGCTG 35678 30 96.7 31 .............................G GTGGCTCTCCGGTCGGGCTGGTGACGCGCCG 35739 30 96.7 31 .............................G CGCGCGCGACCGACGAACCGGGCGCCGGTGC 35800 30 100.0 31 .............................. GGCGGTGATCGCTTTCGGACGAACCGGCTCG 35861 30 96.7 32 .............................G ACGCCTGGACGTAGGACCCGGCCTTGTGGGTG 35923 30 96.7 31 .............................G CGGCACGTGACGAAGCTCAGCGGGGCGAGGA 35984 30 96.7 31 .............................T GGATGAACCCGTTGGTGAGCGTCGCGGGTGG 36045 30 96.7 31 .............................T CGGGAGCCCCCAGAGGCGGTAGACGCACCGG 36106 30 100.0 31 .............................. GGTCGCATGAGGCGTTCGAGGTCGCGGCCGA 36167 30 100.0 31 .............................. GTCATCGACCTGTCCAACGGGGCCGCCACCA 36228 30 100.0 31 .............................. AGCAGATCCAGCTTCAGCAGGGGCTCGGATA 36289 30 96.7 31 ............................G. AGTAGACTTCATCTCCATTTCCCGGCACTGG 36350 30 96.7 31 .............................G TGTGGGCGCTCCTAGGGTCGTGGGAGGAGCG 36411 30 93.3 31 ..............T..............G CCTATGAGGGGCGGGGCTGGGACGGGATCGG 36472 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ================================= ================== 24 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : TGTCCAGCACGGCCCGATCTGCGCCGTGGTGGCCGCCTGGCCCGCCGCCGTCCTGGTCGGCTGCTACGAGATGCTGATGTGGCTGGTGAGGGCTGACGCCAAGAGGCCGGTGGGCCGGTCCGGGGTGGATCTGGACCAGCGGGCTCCGGCCGCCCACCGCGAAAGCGTCGAGGCCGGGGAACGTCTCTCCGAAAGGAGACTCGCGGAGATGTCCGGCAGACCACGCCGCTGGGCCCGATCCGTCATCGAGGAGAGCTGTTCGATGAAGAAAAAATCCGGTCATTCTTTCCTGGCCGGTCGCCGCATCACTCCCCATGCCGGAGACCTCATAGTTATGGCGATGTGGGTGGTTCCACCAACCTGGCAAGTGCGGGGAAAGGAGATCTCGGATCTCCCCGAGAGCCGTGTTTGAAATTTGTGCACTTTTGGGTGTTTTGACTGATTTTTGGAAAGTGAATGAAATAAGGGCTGAGACCTGGTAGATTCCCAGGTCATTCAGG # Right flank : TGCCGGCGACACGTGAATACTGGTTCTGGCGCGGATTCGGTGAAGCTTCTACGCTAACGGGGCTGCGCCCGCGATGATGCGAGGCGTCCCTCTCTTTCCTATCCGGCCTGTTCTTTCCCCACCTGGCCGGGCTCCGGATCATCCGGGCCTGCCGCAGCGGCCGCTCCGTGCGCATCATCGCCGCCACCTCGCGTGCGGCCACCTGTCCGACCTGCGTGACCCCTTCAAGGCGAGTCCACAGCCGCTACGAACGCCACTCGGCCGACACCCCTCGCCTGCCAGGACCCGCCACGGCGCGAAAGGCCGACCCCGGACCGGAACCGGTCGGGGTGCCCTCGCCCCAACGCCGGGGGCGGATCGTCGAGTGCGCCCGTGCCCGCCACGCCCAGGTGCGCCACCCGCGTCAGCAAGGAAAGGCAGGGATGGAGATCACCTGCCAGCTGGACCAGGCACGCAACATCGTGCGCCGCTTCGTTCGCGTCGCCAACCCCGAGGAGCTG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //