Array 1 46234-47047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUR010000002.1 Escherichia coli strain SCPM-O-B-8794 2length=18016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 46234 28 100.0 33 ............................ AATAAAACACCCTGACAATAACGCCTAAAATAA 46295 28 100.0 34 ............................ ACCATGTTTGGCGGTAAATTCCTCGGAATTCCGG 46357 28 100.0 32 ............................ AGCAAGATGACGCTGCCAGAAGCCTCCGATAC 46417 28 100.0 32 ............................ AGTACGGGTAGGATATTTTGCGGGCACCACTC 46477 28 100.0 33 ............................ CGAACGCGGTCATGCGGTATGCGCCGACAATCC 46538 28 100.0 34 ............................ AAAATGCAGTATCAAATAAGCAACGGTGAATTAA 46600 28 100.0 32 ............................ AGATCGATGGACGCCGGGCCGCGCAACAGCAG 46660 28 100.0 33 ............................ TCCGGCGTTGCTAAATCCTGCCAGTTGTCTGAT 46721 28 100.0 32 ............................ AGGTGCCCTGTCGTTTGAAGCAATCAGCATCG 46781 28 100.0 32 ............................ CGCGCGTCTTTGATCATGCTGCTGCTAATTCC 46841 28 100.0 31 ............................ TGAATTTCCATCACGCCCCGTCGTCGGTTTG 46900 28 100.0 32 ............................ AGGACGCACCGGGAGGAGATCCCAATGTACCG 46960 28 100.0 32 ............................ CAGCTCAGGATTAATAACAACCCGCAAACAAA 47020 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTACAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTGATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAATTGCTGTTTGGTTCGCTGGTGGATGGTGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGGTCTATGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCACATTAATCGAATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGATGGAGGATTTCAGCCCCTTTTTTTGATGATGATGGTAACTTATTGATAATTAATGCTGCTGGAAAGTAAGGATAAAAAAGGGTGGTGGTAGGAAAATTAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : AGGCAGCGATATGTTCGACGGGTTAAGCGATATGTTCACTGCCGTAAAGCCTGGGATGTGGCGCGAGCGTTACGTGAACGAAGCCGGGAAGAGGGATTTTTCGGCGTTAATATGGCCTCGACGGGGTGCGGTAAAACCTTTGCGAATGCCCGCATTATGTATGCGCTTGCCGATGAGCGGGAAGGGTGTCGTTTTACCGTCGCGCTGGGATTGCGCACGCTGACTTTGCAAACCGGCGATGCTCTGCGCAGTCGGCTTGGACTCGGTGAGGATGAACTTGCGGTACTGATTGGTTCGGCGGCGGTTAAACAGCTATGGCAGCAGGAAAGAATAGACAATGATTGCGGAAGTGCTTCGCAAGAGTCGCCGGCAGAGGAACAACAGTTCGTTAAGTACGAAGGCAGCCTGCATACCGGGGCGCTGGAAAAATGGTTGAAGGATGACAACAAACTAAAGGAGTTAATAAGCGCACCGATTCTGGTCGCGACGATTGATCATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 53808-54136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUR010000002.1 Escherichia coli strain SCPM-O-B-8794 2length=18016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53808 28 100.0 32 ............................ AATTGTCCAGATGAACCGAATAAACGGAATAC 53868 28 100.0 32 ............................ TGTACGCCTGCAATGTTATCCGCTGCGACCTC 53928 28 100.0 32 ............................ ATATTCGCGCGCTGGGTAGCGACGATAAAATC 53988 28 100.0 32 ............................ GGTTTTCAACTCCTGCGCGGGTCGGACGGGCG 54048 28 100.0 33 ............................ TCCTTCAACCATTTTTCCAGCGCCCCGGTATGC 54109 28 89.3 0 .......................TC..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 32 GTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : TGCGTGTGACCCGTCCTGAATAGCGCACACAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTAGAGTAAAACGGTCAAGCAGAATTTATTAGGAACGATTTGTTTGGTTATGCATTGTACACATGCTTTGCCAGACCTGGATGATGACTGTATAAGTTTGGGCAATTATTTATCAATACTTACGCAGGGATTAGGTGATTAAAGAAATAAACAGTCAAACCCTTTTTTAAAGGGGATGTATAACTTGTTGATTTTTATGATTCTATATTTGGGGTCCTAAAAAGAGTATGACCAAAAGATTTTTATGTTTTTACCGGTAAATCAATCAGATAGTTTGTTATTATTCCA # Right flank : CACCACCTCACCTTATCCTGCAAATTACGCTTCTGCTTAACCCTCAGACGCAAAAAAGGTCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTCTAAGCGCAACGTATAAGGGAGCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9993-9537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUR010000008.1 Escherichia coli strain SCPM-O-B-8794 8length=115020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9992 29 100.0 32 ............................. GTCAGGCTCCGCACGGTTTCGATCACACCGAA 9931 29 100.0 32 ............................. TCATTGATTGATCTAATCTTTTTGCCAATTTC 9870 29 96.6 32 .............T............... TAGGTACAATCGAATATACCGTCGATGCAAAA 9809 29 100.0 32 ............................. TTGTCGCCGACTCTATTAAAACAATGATCAGT 9748 29 100.0 32 ............................. GGGTGTCATTCGGTGGCGGTACTGGTAACGGA 9687 29 100.0 32 ............................. AAAAGACTACCATGCATCAGCAGCAGATGCTG 9626 29 100.0 32 ............................. ACGGCGCTATGGGAGCAATCGCTGGATGATAT 9565 29 86.2 0 .......................GTC..A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGCTCAAAACGCATTAACCGTCTTCCCGCCAAAAGCAGAAACCACGCCTTTTACCGGAATTAATTCACTGTTTCCTTTTATTGAGCACCCGACACCGTTACAGAAAAAGGTGCTGGAGCTGGATATCAGTCAGCCAGGGCCACAGTTATTTATTCTGGAAGATGTGACTGGCGCAGGTAAAACAGAAGCAGCGCTTATCCTGGCGCACAGACTGATGGCCGCGGGGAAAGCTCAGGGTTTGTTTTTTGGTCTGCCAACAATGGCAACGGCCAATGCCATGTACGATCGGTTGGGAAAAACCTGGCTTGCTTTCTATTCGCAAGAGTCTCGCCCCAGCCTGGTGCTGGCACACAGTGCCCGCACATTAATGGACCGCTTTAATGAATCACTCTGGCCCGGTGATTTAGTTGGGTCAGAAGAGCCGGATGAACAGCAAACGTTCAGTCAGGGATGTGCGGCCTGGTTCGCTGACAGCAACAAGAAGGCGCTACTGGCTGAA # Right flank : CATAATATTTTCAAGCTCATCAAGACGCCTTTGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCCAGTCTGACATCGTGCCAGCTATTTCCCGCCGGAAACGCTGCTGTTTTTGCGCGTTGCTGATAACCGTCTTTATTTCCCAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATACCCGCTTTGTCGAATATTTCTGCGTCATTACAACATCCCGTGCCTTTCGGATACTGCTTATTCAGTCCTGGATTTGTAGTGGCAGCAATTCCATGTCGGCGCGCAATTGTCAGTGCACGATCGCGCGTTAATTTCCTTACTGCTTCTGGGGTGTTTACACCACTGTTGAAATACAGCTTATCGCCAACAATCAGATTATCGATATTAATCACCAATAAAGTATTTTTCTTTTCGGTACCGCTCATTCGTTTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //