Array 1 38810-40099 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAD01000022.1 Pseudomonas aeruginosa strain 856 IPC97_22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38810 28 100.0 32 ............................ AGAACGAGCCACGGGTGTCGGCCTTCGACTCA 38870 28 100.0 32 ............................ AGTAGAGCAGACAGCAAAAAGCCCGGCTGCAA 38930 28 100.0 32 ............................ ATCATCCAACAAGAGAGCGTGTCGCGACACGA 38990 28 100.0 33 ............................ AGTTCGCGTACACCTTGTCTTCGTCGTAGATGT 39051 28 100.0 32 ............................ TCGCCGAGGTCCAGGAGCTACGCCGCCAGGCC 39111 28 100.0 32 ............................ ACTAGCAAATCTTGGACGCGCTGGTTGAGGTT 39171 28 100.0 32 ............................ ACAACATCCATTCTGTTCGTGGCATGGTCGTA 39231 28 100.0 32 ............................ TGATGATCTTGCAGAACCGCCAGGGCCGGACC 39291 28 100.0 32 ............................ AACCAGACTCGACCCTTCGGCGATACCCTCGA 39351 28 100.0 33 ............................ GTGCTGCTGGACCGCCACAAGGATGTCGACCTT 39412 28 100.0 32 ............................ TCGCTCATGGCCTCCCATTCGTCGCGGGTGAA 39472 28 100.0 32 ............................ TACCGGAAGGCTGGGAGGAAGTGCAGCTCAAC 39532 28 100.0 32 ............................ TGAACCAGTCCGAGCTAGCTCGGCGCCTAGGG 39592 28 100.0 32 ............................ GGAAGATGCCGAAGACGATCAGCGCGATGATC 39652 28 100.0 32 ............................ TCCACGGTTGCGGGCTTCGCGGGCCTGGATGC 39712 28 100.0 32 ............................ ATCGAGCGCCGGGGAGCGCTGCACGTCGCGGA 39772 28 100.0 32 ............................ AGGAACTGCTCGTCCCAGTCCGTAGCGGCGTT 39832 28 100.0 32 ............................ ATGTTCACGAGGTCGCGGGTAAGTTGGCGTAG 39892 28 100.0 32 ............................ TAAAGGAACTTCAGTCCTCCACTTGGTAGATC 39952 28 100.0 32 ............................ TTGCGGAACGAGTCCCACTGCTCCTGCGCGCG 40012 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 40072 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAGGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATAAGGCGTTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49313-48624 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAD01000022.1 Pseudomonas aeruginosa strain 856 IPC97_22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49312 28 100.0 32 ............................ AAACACGTCGGACAGATCCTGCTCACTACAGG 49252 28 100.0 32 ............................ ACCTGCCACTCGACGTAGCCCCCGGTAAACCA 49192 28 100.0 32 ............................ TACCAGAACCAGGTTTTCCGCACCATCCAGGG 49132 28 100.0 32 ............................ TGATGCCACCATTCGACGCTGCACCAGAAGCC 49072 28 100.0 32 ............................ TACAGCTTCGAGGCTTCGACGACCGCTTCCGA 49012 28 100.0 32 ............................ TGGCAATGCGACAAGTCGTCGAATCAGCGCTC 48952 28 100.0 32 ............................ ATTGATCAGCAGGCCGGTATTCGGTCCCATAT 48892 28 100.0 32 ............................ ATCAGCCAGAGGCTGTCCGATTTCGGGAAGGT 48832 28 100.0 32 ............................ CGGAGGTCGGACATCATCGGACGCTTGTTCGG 48772 28 100.0 32 ............................ GTGCCGAGTGCCCGCGGTCGAGGTGCCGGCCT 48712 28 100.0 33 ............................ ATTCTGGACACCACTGAATTACTGCGGTGCCCT 48651 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //