Array 1 137-824 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDF01000026.1 Escherichia coli strain NS-NP040 sequence26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137 28 100.0 32 ............................ GCACATTCCCGGCCTCTTGTTTCCCTGGTGGC 197 28 100.0 32 ............................ GAAAACACCGGCGAGATCGTATTTTTTGCCGC 257 28 100.0 32 ............................ TCGTCTATATTTTCAAATTCTTCTCGAACCGC 317 28 100.0 32 ............................ AGCAAACCACGCTCGGTAGTGAACTACGCATC 377 28 100.0 32 ............................ ACATTTAAACTAACAATTGGTGAGCCTGATAT 437 28 100.0 32 ............................ TGAGCACGTCTGCCGCCGGGCGACCAACTGGC 497 28 100.0 32 ............................ TTTCTGATGTACGGGCAGCCAGCGCGGATCCA 557 28 100.0 32 ............................ GGTGCGAGCTCCTGCTCTTGTGACTGTGAAAC 617 28 100.0 33 ............................ CCAGCTGGATGAACAAAGGCGAACCGCAAAAGC 678 28 100.0 32 ............................ ACGAATGCGCTTACATCCTGGCAAAAGGGCGT 738 28 100.0 31 ............................ AAAACATGGCGCTGGACCAGACCCGCAAGGT 797 27 92.9 0 .......................-C... | T [817] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCTATCGACTCAGACAGAAACGAAAGGCCGGGGTTATAGCAGAAGCTAATCCTGAGTAAAACGGTGGATCAATATTGGGCCGTTGGTGGAGATATAAGTGGATCACTTTTCATCCGTCGTTGACAATTATTCCAG # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 215803-216794 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDF01000059.1 Escherichia coli strain NS-NP040 sequence59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 215803 28 100.0 32 ............................ CGAAGCCGTTGCGGATCTTTAACAGCGCCACG 215863 28 100.0 32 ............................ GCTGTAAATTGGCTGACCGTCGCAAAATGAGG 215923 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 215983 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 216043 28 100.0 32 ............................ TCCAGTGATTCGGCGGAGTCGCGCTGCTCAAT 216103 28 100.0 32 ............................ GTGGTAATACATCAACGACACCCGCGCGTCTT 216163 28 100.0 33 ............................ CGGCATATAGGGCGGCAGATTCCTCGGTCCGAT 216224 28 100.0 32 ............................ TGGCGGCGACGGACTACAACCGCCGCAACTCT 216284 28 100.0 32 ............................ AGTGCCAGTGCTGCGCATGCATCTGAAACCAA 216344 28 100.0 33 ............................ CGCAGACAACGGGCCGCGTCGCTACAACGTGCT 216405 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 216465 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 216525 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 216585 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 216645 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 216705 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 216765 28 85.7 0 ....................A...C.CT | T,C [216785,216789] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //