Array 1 10482-11060 **** Predicted by CRISPRDetect 2.4 *** >NZ_APGN01000231.1 Leptospira santarosai str. CBC1531 ctg7180000004767, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10482 29 100.0 32 ............................. GATAAATCTCTTATTGGTGGGCAACCTTTAGT 10543 29 100.0 32 ............................. GGATTGTTTTAAAGTAGTTAAAGCGGCGACGG 10604 29 100.0 33 ............................. TTCGGCAATCGCACGAACCGCGTAGGTCGGTTC 10666 29 100.0 31 ............................. GGAAAACGCGCGCGATTTGTAAGGCGAATTC 10726 29 100.0 32 ............................. GCAGGATTGAGCCTTTCTGAACTTGGTGAGAA 10787 29 100.0 33 ............................. AACGCGATGCGCTACTGCTGACTCTCAAAGCGG 10849 29 96.6 32 ............................T GAATCGCATTTACGTCCTTGCAGGAATTAGGA 10910 29 100.0 32 ............................. GTTTCGGAGGCTGCTACGCTAGCAATGAATAC 10971 29 100.0 32 ............................. GCCTTGAGGGATCCGTTTTTATTCAACAGATT 11032 29 93.1 0 ............C...............C | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : ATAGTAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTCTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTCTTTGTGGCGTCCATCAACGCCAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGAACGCGATCATGTTGTTTTCGAACAACTCGGAACAGGGTTACGGCATCCGTTCCCACGGCGATCCTTCCCGAGAAATCATGGACTTTGACGGTTTGCTTTTAATGTCCAAACCCGATTCTAAACGCGACCGCTGGGACGATTCCGATCTTTCCAAAAGCTCCGAAGTCGACGGTTCTCCGTTTCCGGATCTCAGTAGTTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAACAGACCTTTCTAATGAACCTTAGAGGCAAATATACTTCTTAAGATTCCTATACAAGTTTTTAGC # Right flank : CAATGAGCAAATTTCCCACGCGTGGGAAATTTCCTTTTCCCCGGTTGAACCGGATGCACACATCCGAATGAACCGCTTCCCACCATACGAGCGCCCTAAAAAAAGGTATAAAATGAAGAACGTGAGTTCGGCCTAAGAAAATCGGAGCCTGTCCCGAATGTGGGAACTCTTACAGTTTCAGTAAAGCTATCGAATGATAGGAACCGACTTCTTTTAAGATTTTGAGACTCGCTCCAAGCATCATGAATTCTAAGCTACATTCTTTTGAGTGCGTTTTTAAGTCTGATTTCAAATAAAAACATTTTCCATTCATCCAGTTATTACTATTATTATAACATGGACAACTCATCAGTGAAAAAGACGACCATTCGGGCAATAGGCAACTCCGCCGGGGCTACCATTCCTAAAGCTCTATTAGAAAAGTATAATTTTTATGAAGGCGACACCGTATTACTCTTAGAAACCGAATCGGGTATCCTTTTATCTCCCTATGATCCCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_APGN01000095.1 Leptospira santarosai str. CBC1531 ctg7180000005097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94 29 100.0 32 ............................. GAATCCTCTGTCAGATGCTCCCCCTGCCAGTA 155 29 100.0 32 ............................. ACGATCTTATTAAGTCTTTGGCCGCACAAGTC 216 29 100.0 32 ............................. TTGATTGGCGAGTTGAGGGCGGGAGAGAAGCG 277 29 100.0 32 ............................. GGTTCAGTTTTGCAAGTTTGTTTTCGCGCAGC 338 29 100.0 32 ............................. ATTCACCGGTTCGAATTTGATCGCCCAGCTTA 399 29 100.0 32 ............................. TATATCAGAATAATCTAATCTTTGATTCACTG 460 29 100.0 32 ............................. CAAAGAAAGCCGATCGTGTTATATTTGGAAAA 521 29 100.0 32 ............................. CCGAAGCCCGACGCGATCAAAGCGGAGGAGGA 582 29 96.6 32 .........G................... ACTATAGTGGATAGAATTCTTTCTATGGAGCG 643 29 100.0 32 ............................. TATACGTCGGATAATTCGAGGTCCGACGATGG 704 29 100.0 32 ............................. CGAATCGTCGAGGAGTTTTGGAAAGCGAATCC 765 29 82.8 0 .......................ATT.AA | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CGTTCTCTAAGGATCACTCGGCAGGTTTTGGGACACGCTGTAAGTGAGTTCTAAACTGACATAATATCTCAAGGTCCTATACAAATCTTTAGCC # Right flank : ATTGAAAGTTTTTACAAGATAGAATCAACGAACGAACTTTAAATTTTCGACATTTATATTTTGGAAAAACTTCACCCATTCAAAGATAGATTTGAAAACGCAATCGAAATCCCAAAAAATATGCCTCAAACGTTTTGTTCTATCTCGAAACGAAGTATCAAAACAGAAAACACCGTTCGAAAATCAAAAAGTTTGAAAAAGAGAACTTGTGAACCGAGGATAATGATGATTTACTGATTTACAACGCTTCGGAAATAATGAAATTGATATGCGAAATTCGATTGTCGTTTTAATTTTTATCGTATTTACGTCTTTCGACCTATCGGCGAAAACCTCCGATTTAAAAGGGGAATGCAAACCGAAAGATTGGATCTGTATTCTTACCCGCAACGAAAACGACAAGGTAGAATTTTACATTCAAAACCAAACACCTTCGGGAGAATATCCCTTTATAATCCATTTTGACTTTACCACTTTGGATAACTTCGAATCGGACGTCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 64883-64482 **** Predicted by CRISPRDetect 2.4 *** >NZ_APGN01000096.1 Leptospira santarosai str. CBC1531 ctg7180000005053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64882 29 100.0 32 ............................. CCAACATGAAAGGCGAGAGTGATTTTAAAAAC 64821 29 100.0 33 ............................. ATCTGATTCTTGATTCGGGGGAACAAACAGTAA 64759 29 100.0 32 ............................. GTTCCCTCTCTCAAAAAATTACTAAATTTTCT 64698 29 100.0 32 ............................. AAAATTCCAAGTTCTTCCGATCTGCAAACGCT 64637 29 100.0 32 ............................. TAGAAAGGCGTCCGGCTGTGGTAGCGGATTGC 64576 29 100.0 32 ............................. CGATCGAATGGGAAACGTCGTTCGCAACACAG 64515 29 93.1 0 .......................C....A | TT,TAC [64485,64491] ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CAATGAAGTTTGTGTATGGAGTGGCAGCTCTGATTCTGTGGGAGTTACGACATTCGGGAAACTGTGATTTTCTTACGCCGAACTCACGTTAAATACAATGTCTTTTGAATACGAAGTTTAAATTCAACTAACACGAGTCCGGCGTTTTCTCATGCGTTTTTTTCCATAAAACAAAATGTGGGAACTCCCACAAGAATTGAAAAGTCCGCTCGAATACTCTCGTCTAGATTCGGCACATAGGCAAACGTTGTAGACCGGGAATATGATATCACTGTAAAACACAGGGTTTGATGAGAATCATTTGTTATCTACGCTGACTAGAACGCGAAACCTAAAAATTGGTTGCAAAAATCCTCATTTGTCCTATACAAGTTTTTAG # Right flank : AGGAGTTTTTGAAAAATGAACTATCAAAACGTTTCAGAATAACGAAATGAAAATCTTAGAACACGACGGTATAAGGAAAACGAGATATCCAAATCCTACTCTAAAATTTCCGATGACATCGGAAGCGATTCTGAATCTTTAACTACCGGCAAAAGCATTTTCTACAAAAATTCTCTTTTTACCGATTTTTGTATTTTTTCTTTCGCGCAACGGTAAGTTCTCTTTTTTGTTTCATAATATTCTTTTTCTTTGATATATTTTCAAATCCAGAGCCGAGAATGTATGCCACATATTTCGATATTGAAAAGATAGCCTCTCTATCCTCGGCAATTTTGAAACGTGCGCCTTACCCGATCTTATATCTGATAAAAATAATAAATTAAAAACTTATAAAATCATTTCCATTGCAAATACGAAACCCGAGATCGCATCTCTCAGAAAAATCCCTTTCTCAAGTTGATTCCGTATTCCAAATACGCTTTGAGGCAACAACACATATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //