Array 1 240324-239762 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJX01000003.1 Staphylococcus warneri strain YZ-1 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 240323 33 100.0 33 ................................. AACAAAGATGGAGAAATATTAGACCCGGTGAAT 240257 33 100.0 33 ................................. AACTACAATAGAACGTACTTGCGACTTTCTCAT 240191 33 100.0 33 ................................. AACACGGTATTGTAGGCGAACCTGTCGACCAAG 240125 33 100.0 33 ................................. AACCAAACACCTAATGTTAAAGCGTCTTCAGGT 240059 33 100.0 33 ................................. AACTATGCAGAATACGGTCATACTTATTTAGTT 239993 33 100.0 33 ................................. AACGAATTAGGCTTTATCACTAACAAAACCGAC 239927 33 100.0 33 ................................. AACCAGAAGTTCTTGATTCAATGGATGAGTTAG 239861 33 100.0 33 ................................. AACCTGAGGCAGAAATTAATAAAATGCAGCAAT 239795 33 100.0 0 ................................. | A [239763] ========== ====== ====== ====== ================================= ================================= ================== 9 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTGAGGATTGGAAATATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAGGATAAAATTGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTCAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACTGTCTATATAATAAATGATAAAAATAAGTCTGATCACTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACTATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTTATAGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAGTATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGCAAACTTTTTCCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 246363-245998 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHJX01000003.1 Staphylococcus warneri strain YZ-1 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 246362 33 100.0 33 ................................. AACTGGTCAAATGGAATTATGGTCATCAGTGTA 246296 33 100.0 33 ................................. AACACCACTACCTGATTTCTTTAAGTTTTCAGC 246230 33 100.0 33 ................................. AACGAGTTATTAATTCTTAATACTTACCATCTA 246164 33 100.0 33 ................................. AACATTATACACAATTTTCGGATACATCCAGTA 246098 33 100.0 33 ................................. AACTGAATAAGAAAGCATTCCTAAGCCAGTATT 246032 32 87.9 0 ....................G.A-........T | AA,T [246001,246005] ========== ====== ====== ====== ================================= ================================= ================== 6 33 98.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : AAGGATTATATACAGACTTCGTCATCGTTAATCAACAAGGTCATCGTGTGCGACCAGGGCAAGGCTATGTACATCATGTCGCAGTCAATCTACCTACAGATATAGACTTAAACGATATTTATGAGAAAATAGCACGACAACCTAACCCTAACTCCGGCATCATCGATCGATACTTCTTCAAATCATTATACTATCGACATAACCAAATCCTATTCGAATTTGCGACAGCAGAGCCAGGGTTTACCGTTGATACACCCGTCGATAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGACAAAAGAGACGAAATCGAAAGCCAATTGAGAGAAATATAAAATACAATATAAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAGTATGTATTACTAAAATTTTTAGTAGTAAAGATTTATACGCTAGAG # Right flank : AATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGACAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTTGTTTTAGAACAACTTATGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAAATTATAGATGCAGGAGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGACGAAGAATACATAGATTAGAACGAGTAAAATTATTACTCACAGAATATGACCTAATAAATAAAGAACAAATACCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //