Array 1 241715-241223 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806773.1 Neisseria sp. HMSC063B05 Scaffold341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 241714 33 97.0 32 N................................ ACTAAACCGGACTGCTGAGCCATAAAATGCGG 241649 31 90.9 32 .T..................--........... GACTGCTACACATCGTCCCATCGAGACGGTGG 241586 33 97.0 35 .G............................... CGCGCAAACTCAAGAAATCACACAAAAAATACAAG 241518 33 93.9 33 AG............................... GGCAAACGCCGACTGCGCAGAACCGGCATCAAT 241452 33 93.9 32 GT............................... TCAACCTTTTGGACGAAGACGGCCTAATGTTT 241387 33 97.0 33 T................................ ACGGATTAAAAGCAAGCAAGCATGGATTGTTAA 241321 33 93.9 33 TT............................... CAGCAAAACCCTCTACTCGCCGCCTTTACCGGC 241255 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 95.4 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TCGATTTTTTGTTGGTATCGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCACGATTACTTTGCCTATAACGACCATTATTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGGAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 242785-242096 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806773.1 Neisseria sp. HMSC063B05 Scaffold341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 242784 33 90.9 32 NNN.............................. CATCGGGCGCAACGCCGGGCAAGGCTTGGGCG 242719 33 97.0 33 .A............................... TTTTAAATACTTGACTTCGTCGTCTGACAAATC 242653 33 97.0 32 C................................ GCGGATCAGGGTGGTGACGTCTTTGTTGTTGA 242588 33 97.0 33 G................................ TAATTAGCTCAAACGTTTGGACTATGGAAGCAA 242522 33 93.9 32 TC............................... CTTTTAGTTAGGGTTTGCTTGATGTTTGGTCG 242457 33 100.0 32 ................................. CACGAGTAAACTGCCGGCGCCTTAAGACCAAG 242392 33 97.0 32 .T............................... TGTGATGTCGGGATTGCCGCCGGCGCTGCCGT 242327 33 100.0 34 ................................. AAGGACGGCGCGCCGGTATTTGACGAAAACGGCA 242260 33 97.0 32 .A............................... GGCGTTGATTTCTTCGATTTTTTGTTGGTATC 242195 33 97.0 34 G................................ CATCACGATTACTTTGCCTATAACGACCATTATT 242128 33 90.9 0 TC..............................N | ========== ====== ====== ====== ================================= ================================== ================== 11 33 96.2 33 AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATATGCCAAGGGCGAAGACGAATTGTCGAGTTATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCAATCGCAAGACCTGCTCTGCCGTGAAACTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGCAATTTTTCGGTCATGTAACCAACGACGCTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTCATCGTATGCCGTCGGGCTTTGATTTCCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTAAACCGGACTGCTGAGCCATAAAATGCGGCTCAGCCGCCTTCGGGCGGCTGTGTTGAAACGACTGCTACACATCGTCCCATCG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 243789-243353 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV806773.1 Neisseria sp. HMSC063B05 Scaffold341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================== ================== 243788 33 97.0 32 C................................ AGGCGGTAAAAGATGATGACACTCAGTGCATG 243723 33 100.0 32 ................................. AACCCCTCAAAAACTAAGCCGCCCGAGTCAGC 243658 33 97.0 33 .C............................... AGCGACAAAAGCGACACCGCATCAAACATTGCC 243592 33 100.0 34 ................................. GACATTGAGATGCTTGGCGTAAAACTCCATCAAT 243525 33 93.9 43 GC............................... GTTTGCAACTCAATCGAGCAGATAATGATACAGTTGTCGTTTT 243449 33 93.9 31 CA............................... GTTTGCAACAGGAAGCCTTGAAGTTGGCGCA 243385 33 93.9 0 GC............................... | ========== ====== ====== ====== ================================= =========================================== ================== 7 33 96.5 34 ATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGATATCGCGCCCGATCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCTGAAACTGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTAGAACATCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGG # Right flank : ACAGGCGGTGTCTGGACGTTCACAACCGACACCGACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATATGCCAAGGGCGAAGACGAATTGTCGAGTTATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCAATCGCAAGACCTGCTCTGCCGTGAAACTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGCAATTTTTCGGTCATGTAACCAACGACGCTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTCATCGTATGCCGTCGGGCTTTGATTTCCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //