Array 1 87860-85791 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSUF01000005.1 Ligilactobacillus salivarius strain FXJSW2_3.scaf Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 87859 36 100.0 30 .................................... TACTTACCAATGACTTACTCTGTTTACGGA 87793 36 100.0 30 .................................... CCTAGCATGTTACCAACACCAGCTCCAACT 87727 36 100.0 30 .................................... TTTGGTTATTGTACTTTAAACGAGTAACTT 87661 36 100.0 30 .................................... CCAAGCCGTGGTCATGAACAGATGAATAGG 87595 36 100.0 30 .................................... TCAAAAAAGTAACAATAATTTGTCCTGCAT 87529 36 100.0 30 .................................... TACAACAATGGATGAGTTATACCATGATGT 87463 36 100.0 30 .................................... TACAACATTACTTTCTGGGTTGATAGCGCT 87397 36 100.0 30 .................................... TATCAACCCAATGGATGCAGCTAAGTATTT 87331 36 100.0 30 .................................... TGTGCTAGTCGGTAGTACGTATGATAGATA 87265 36 100.0 30 .................................... TACCGCAACAACAACAACATCAAACAGCTG 87199 36 100.0 30 .................................... TCCAGGTAGTGAGATACATGCTATTCATGG 87133 36 100.0 30 .................................... AATGGCAACTCTAATTGTTGGGGAGGGCTA 87067 36 100.0 30 .................................... TATCCATGTGTTGAAGGATCATAATGCTTC 87001 36 100.0 30 .................................... AACTTTAGCCGCACCAGCTGCAAGCGAACC 86935 36 100.0 30 .................................... TAAAGCGCAGGTTAGTTCACTGATTGAGAT 86869 36 100.0 30 .................................... ACAATTATGCATGATGAGCCATACGGAACT 86803 36 100.0 31 .................................... TGAAAAAATGACGTTTGACGAGTATCTGATA 86736 36 100.0 30 .................................... TAACTGGAGGAACTTAAAACATGAGTAATT 86670 36 100.0 30 .................................... ATGCAATCATTTTTCATGGGTCAGCACCGC 86604 36 100.0 30 .................................... AACAGCTGACAGCTTGGAAGATTTGCTTTA 86538 36 100.0 30 .................................... GCACAAGGTAAGCGAGCACACACCTACATT 86472 36 100.0 30 .................................... TCCGATAAAGAATACTAAACCTATTTAATT 86406 36 100.0 30 .................................... CATTAGACGCTAAAAAAGTACAGTTAAGCG 86340 36 100.0 30 .................................... TGCTTTTTCATGGTTTTGGTTCGTTCACGC 86274 36 100.0 30 .................................... GAACCATTTACTTCATACGTGATGTTGGCG 86208 36 100.0 30 .................................... TATCTAATGTATTTTATGGATCACGTCAAA 86142 36 100.0 30 .................................... AAGTTCACACGAAAAGCCCTATGACAATAC 86076 36 86.1 29 ..........T.........T...A......G.C.. ATCTGCGTTCAGTTGGTGTCTCAATGCTC T [86042] 86010 36 94.4 82 ........................A..A........ ACAACTGGAGTTTGAGTACGTTTAGCTTGTGTTTCAGAAGTATGTTAAAAACCTATTATATGTTATAATATGAAAGTGTTTA 85892 36 83.3 30 .....G....T.........T.........G.T..T AGTAATTCACCGCTAGTTAAGTGGTTTTTT 85826 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================== ================== 31 36 98.2 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTAATTAAGAAGATTATTGAAGACATCACAGACGATGAAAGACAAGCAATACTAAAATCAGTAAATAGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCATTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTGCATGTGGAACTAAATAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAGGTCTTGTTAAGGCGACTAACTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAGCTGTGATAATTACTACATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAGTAACG # Right flank : TAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATGAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAACT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //