Array 1 21663-23764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVO010000021.1 Erwinia amylovora strain Ea321 Ea_321_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21663 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 21724 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 21785 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 21846 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 21907 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 21968 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 22029 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 22090 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 22151 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 22212 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 22273 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 22334 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 22395 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 22456 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 22517 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 22578 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 22639 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 22700 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 22761 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 22822 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 22883 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 22944 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 23005 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 23066 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 23127 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 23188 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 23249 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 23310 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 23371 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 23432 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 23493 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 23554 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 23615 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 23676 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 23737 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 34672-36777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVO010000021.1 Erwinia amylovora strain Ea321 Ea_321_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34672 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 34733 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 34794 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 34855 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 34916 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 34977 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 35038 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 35100 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 35161 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 35222 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 35283 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 35344 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 35405 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 35466 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 35527 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 35588 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 35649 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 35710 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 35771 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 35833 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 35894 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 35955 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 36016 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 36077 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 36138 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 36200 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 36261 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 36322 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 36383 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 36444 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 36505 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 36566 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 36627 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 36688 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 36749 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 46241-46569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVO010000021.1 Erwinia amylovora strain Ea321 Ea_321_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46241 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 46301 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 46361 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 46421 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 46481 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 46542 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //