Array 1 417761-416884 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVJ01000001.1 Veillonella sp. 3310 contig_0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 417760 35 100.0 41 ................................... AATCTAACTACACCTGTTGATACTTTTGCCATGGTTAAAAT 417684 35 100.0 42 ................................... AATTCAAAACCTTTTTTATAAACTGCAATAACACACATGATA 417607 35 100.0 42 ................................... CACAAAATAATCTTCTGCTAAACCTTCTTGAATGTCTTGTTT 417530 35 100.0 42 ................................... TAACTTATAACATGTCAAGCATACTTTTAATCGTTTCTTCAA 417453 35 100.0 43 ................................... GACTTCGTCCATAAATTACTCCTTTCTTAACTTATAAGTAAAG 417375 35 100.0 40 ................................... CTGCATCATGCGTTTGTTCTTTCATTAATCCTCTCCTATT 417300 35 100.0 42 ................................... GTTTCAAAACGGAAACTATTAATGTATTGTTTTCCAAAGTCC 417223 35 100.0 40 ................................... ACGAAACTCTCATTAGACATTTCAGCGATTTGTTTGTCCA 417148 35 97.1 36 ...................A............... GCTGGTATGCTCTTGCAGTATGTCATTTCGCATTGT 417077 35 100.0 43 ................................... TCATATTCCAAACCCAAATCATCGAGTACTAATAAATCAACAT 416999 34 91.4 46 .........-.........A..T............ TCGTCGTCTAAGTCGTTACCTAAATCATCGTTGAAGTCATTCACGC G [416973] 416918 35 82.9 0 ........C......T......T....G.....CT | ========== ====== ====== ====== =================================== ============================================== ================== 12 35 97.6 42 GATAAAAAAATAATCCCCAGTACGGGGACGGAAAC # Left flank : AAGCAAGATTCTTCAATTCAGTCTTCTCAAGACTTAAGCATATATCAAGCAGATTTTGCGTTAGAATTTCGTAATTGGGATGATCATAGAGAAGGATATGGATATCCACTAGTTTGGAATGATAATACACAAAATATGGAATATGGTGAACCATATCATATTATGATAGATACGAATTGATTTATAAAAAAGAAAAGGGCTTATAAAGAGAAATTCTTGACAATTTGTTTGGATAAGATTATTCTGTAGACGAGTCAAACTCCTCACATCCGCAAGGACAGATATGCTAATCTGACGTGAGGCTTTTTTATTGCTTGAAATTTGCAATTTATTCTATATATATGGTATTCTTGTGTTAGATACAAATCTCCACCGATGTGATAAGAATAGGCTTGAATGACAGTTTTTGAGAGTCTTCTTGAAGTTAAAAGTATCTTTATAAAGACTCCGCCGATAACCATAGTTTAAACGCACTAGTTATCATAACTATAGAGGGTAGG # Right flank : CGGTAAAAAACTTAAGATTGTAGTACCTAATCCTACGCGTAAACAATGCACCGCGTTCTTTACGTCCTATAATATGGGATCGGAGAGTATAATAATAGTTATGTATGATAAGGGAGGCATTTGTATGACGACTTTATATGTGACAGAATCAGGCTCGTTTATTAAACGAAAAGGTGGGCATGTTATTGTTGGTAGGAATCATGAAGTATTATTTGAAGTACCATTTGAGTCTATTGATGATGTAACAGTGTTTGACTCGGTTCATATTTCATCATCATTATTGACTGATTTTATATCTAATGGTATTCCAGTGACCTGGCTATCAGGATATGGGAAATATTTCGGTACTTTGATTAATACAAATACTGTAGATATTCATAAGCATCAGAGACAATTTACTATAAGGGGAGATAAAGAGTTCTGTTTAACACTTAGCAAAAAGCTAATCAATGCTAAAATAAATAATCAGCTAACTATATTGAGACGCTATGAAAGGAATC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAAAAAATAATCCCCAGTACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 593480-594636 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVJ01000001.1 Veillonella sp. 3310 contig_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 593480 36 86.1 30 ....T...T.....T.....C...G........... ACAATTGGCGTTTTTGTAAAAGTTATTGGA 593546 36 100.0 30 .................................... ATCACCCTCGAAGTTAACATCGCCCACTGA 593612 36 100.0 30 .................................... ACGAGTCTACTAAAATCTAAGGGAGTTAGG 593678 36 100.0 30 .................................... GCGCGCTAATCCATGAAGTTAGTGATTGGA 593744 36 100.0 30 .................................... AATGGCATTCGCTTTACACCATCCCTTGCA 593810 36 97.2 30 ....A............................... ACTCAAGAAATCATCTTCGGTTAGATCATA 593876 36 97.2 30 ........T........................... ATCATGCTATACAGCTATTTGTAACCCCAT 593942 36 100.0 30 .................................... AGTGAAGAATTTGATACTGCCAATTTTGAC 594008 36 97.2 30 ........T........................... CTTAATTACACCTAGGCGGAAGTTATACCG 594074 36 94.4 30 .C......T........................... ACAGCCTACGGTATAGATGCTGTACTAAAG 594140 36 91.7 30 ..........C..........G.......T...... GTCTCACGCTAAGAGTGTTAGTAGTAACAC 594206 36 94.4 29 ..........C....................A.... CAATGCCCACTTACACAGATCAAAGAAAA 594271 36 88.9 29 ......AGT...........C............... AGCGCTTGTGCTTTATTTTTTTATGTTCA 594336 36 91.7 30 .......G......T.........T........... CGACAACAACACTTGCAAGCATGCTTCAAA A [594362] 594403 36 97.2 30 ........T........................... TGCTGATTCCATATGTGGACATAATGTGAT 594469 36 100.0 30 .................................... GGAACTTCATCCCCTTCCCACTCATCCTTT 594535 36 100.0 30 .................................... TATGGAATAAACACTGTAGTGAGTTATTCA 594601 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 96.4 30 GTTTGAGACATTTACAGAATTACACTACTCTCAAAC # Left flank : CATTTGCACATCAAAGTGACGCATACCCAATACACGCTTGGATGCCTCACGAACCACAGCAAATGCTTCTGGTAAAATATCATCTAATGTTTCACCATTAGCCAACCTTGCTTTGAACTCCTCTGTCTTTGCGCGTAAAGAAGTATCGCTCAAGGATAACAGTTCTGGTTCCAATCCATTAATCTCTTCAACAATGGATCGAATTCGTTTAATTTCTTTTGCATTTTTATTGCCTAATAGTTTTTGTATAAAACCTAACAACTATCTCAACTCCTTATATGTGGAAAGTTTCAATTAAAGACTATGTATCTAGATTATTATAGCCTACTAGCAAGTAATAGTCAAAAAGAAGTGATAAAGTGACGGTGTCATGTTTATTGTTTCATACTATAAAAAAGATTAGTCCGTTATATGCACAAACTAATCTATCCATTTCTGTATTCAATTTAGAAAATCATACCACTCTCAAACCGTCACATATTTTTTGGACGTAGATATCA # Right flank : CCCCAAACCCAAATACAAGTTCAGCGTTCCAAAGCTTGTCCAGTCACCACCAAGTGTAATCCTGTAAATACCGTTAAATCAAACAAAAATCACTATCTAAAGTATACCCATTAATTAAAGATTTTTCAATATCATCTAGTCCATATGAACCAGATGATATACATAGAACACATAGCTGTTTCGCTAATATAGTCTTAAAAAATTGATGTAATTCCTCGGAGTCTAAATACATATCTATATTCATAATCACAAATTACAGGCTTATGTTCCCGCAGTTGTTTTTCTAACAATTTAACACTTGTTGTATTTAATACCAACTTCACATACACTGATTCCTGTAACATAATAAAGCCATTCACTAATAGAAATTTTCTGAAAATACAATTTTCACCTTAGCTTTAACTAAAGCATTAAGAAGAACGGTAGTTAAACTTACTGCAGTAGATTCAATAATCACCATGTAAATCTCATCAATAAACACTTTTTTCACATCAAATCCC # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGACATTTACAGAATTACACTACTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //