Array 1 252605-255683 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSAK01000001.1 Bifidobacterium pseudocatenulatum strain AF12-10-6.0 AF12-10-6.0.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 252605 29 100.0 32 ............................. CAACTTCAACCTCGAAAAATATCAAACCGGCG 252666 29 100.0 32 ............................. CCAGCATGTCCGGCGTAAGCCAATGGTTCGCG 252727 29 100.0 32 ............................. ACCTGAAAACCATCATTAGTGATGATAAAATA 252788 29 100.0 32 ............................. TTGCATGTAGATCTCGGACTTCCGGTCAGTGT 252849 29 100.0 32 ............................. AAATGGATGACGAAACCACCGAGGAGAGGGAC 252910 29 100.0 32 ............................. TCTCGGTACAGACAATCACATCCCTTAGTTAT 252971 29 100.0 32 ............................. CGCCATTACTGGCCGCGATGGTACTGAGCGTA 253032 29 100.0 32 ............................. CCCAGCTAGAGTACGAAATCGGACGGCATACC 253093 29 100.0 32 ............................. ATCTCGACCAGCTCAGGGAACAGCTCGACAAT 253154 29 100.0 32 ............................. GTCCGGGTGAATATCGGTAAAAGAGGTGTCAG 253215 29 100.0 32 ............................. GCGGCGTGCTGGCGATCGTGAAGCTGGCAACG 253276 29 100.0 32 ............................. TGGCGAGGAAAACAAGTACCTCCTGCCGGACA 253337 29 100.0 32 ............................. GAACTCAAGGCGTCGCCAATGTCGGCCATGCC 253398 29 100.0 32 ............................. AGATATCAAGGGTGGAAGGATGATGGGGGCGT 253459 29 100.0 32 ............................. CGCCGATATCGAAGCGATCAAACAGCTTGTCG 253520 29 100.0 33 ............................. CATCCGACTCGCAAGGACAAGGGCACCCATCAA 253582 29 100.0 32 ............................. TTTACAGTGACGTTGGCCGCTCCTGCGCCGGT 253643 29 100.0 32 ............................. GTGTTTGAAAGCGCTTGTGAATTGGATGAAAC 253704 29 100.0 32 ............................. AACCAAGGGCACCCCGACACCGGACGGGGTGG 253765 29 100.0 32 ............................. ACGATACGTAGCACTCGCACCCGCAGACAAGT 253826 29 100.0 32 ............................. GCTTCCGTGCTCGCACCCCCCGCCGTGATCTT 253887 29 100.0 32 ............................. GCAGACCGGCGTAGCGAACACCATGCGATATC 253948 29 100.0 32 ............................. AAGGCGCGTGTCAGTTTGGATATGGCCGGACG 254009 29 100.0 32 ............................. GACTCCTGGGCGCGACGCTCCGTCTCTTGGGC 254070 29 100.0 32 ............................. AAACGTCGGCATGTGATAACTTCCCTTGAGCC 254131 29 100.0 32 ............................. CAATTGGACAAACGAGAACAGGACGGCAACCA 254192 29 96.6 33 ............................A TACGGTTGCGCGTTGTTTTTCGAGGACAAGCGT 254254 29 100.0 32 ............................. TTCCACGACAACCTGGATCGGCCAATCGTGGA 254315 29 100.0 32 ............................. ACTACGACCGTTATGGCCGGGACAAAGGCGAT 254376 29 100.0 32 ............................. GCGCCGCCGTTGTTGACCACGGAAAAGTGGGG 254437 29 100.0 32 ............................. AGGGGCAACGCGCCACTGCCCATCGACACCAG 254498 29 100.0 32 ............................. AGGCAGGAAAAATACGCGCCGCATACGCCGCA 254559 29 100.0 32 ............................. CATTCCCGCTGTGTCTCACGTGAACCAAACCG 254620 29 96.6 32 ............................T TATGCGACACGACTCGCCATCGCAGACCGCGC 254681 29 100.0 32 ............................. GGGTTAGGGGTAATGGAGCCCCTGTGCTTGTA 254742 29 100.0 32 ............................. GAGGAGCCACGCATCACCCCCCGTGACGTGCA 254803 29 100.0 32 ............................. GGGTTGATCTCCTTCGTGCCGAACGCCGCCGC 254864 29 100.0 32 ............................. TGGTGGCCCGCCGATTCGGATACGCTTTGAAC 254925 29 100.0 32 ............................. GTGCTGAGCGTACGGTATGTGGTCATAGTTGG 254986 29 100.0 32 ............................. CAGATCATCGCCATCTACACCAGCCAGGAAAA 255047 29 100.0 32 ............................. CATGCGAGCGAGTTAGCCGAATCTGGCTTGTC 255108 29 100.0 31 ............................. TCGGGAGAGGCGAAGAACGTGCTGATGGCGT 255168 29 100.0 32 ............................. AGTTCCATCGCCGTTTCCGGTGCTCGATGCTG 255229 29 100.0 32 ............................. TGCTGCTTCGGCGTCACCACTGGGGTAGTTGA 255290 29 96.6 32 ............................A CTTTGATGCCGACCGTGCAGGCCATGCTGCCG 255351 29 100.0 32 ............................. AGTAGAGTTTGCGCAGATTCCGATACCGGGCG 255412 29 100.0 32 ............................. CCGCAGTTCGACCTCGACTTCATCACCCGGCT 255473 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 255655 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 49 29 99.5 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATGTATGGCAGGTGTACGTGCGAAAAGCGCCAAAAACATGCCCCCTAAGTGGCTTTTCTCGAAGGACATGTGCCATATATAAGCGAGAAACTTCCGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCGCGGTTCAGTTCAGATGAACTGGGTATATGTCCATAAATTTCGACG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //