Array 1 9548-9364 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOT01000009.1 Ligilactobacillus ruminis strain BIOML-A1 scaffold9_size78438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 9547 36 97.2 38 ................T................... TTCCTCCTGAATTTGTGCTATAATATAAGTGATTCATA 9473 36 100.0 38 .................................... CTTCATTTCTTTTTTCCTTCTTTCAACTTTATGTACTT 9399 36 94.4 0 ...T.................G.............. | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 97.2 38 GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Left flank : TTTTCTTTGGCAATTTGTTATCGTTATTCTCAATGAGCGCAAAAAAGAATAAACTGAAAAAATCAGTCTCGACGCTGATGTCGATTTTGATGCAAAGAGGGTATTTTCAATGGAAGAAGAACAAAATCCGTTTCAAAAAATGGCGGAAAAGCATAAAAGCGAGCAAAGAAGAAAAGTTGAAACTGCATATGAAGCGTAAAAAGAACTGATTCAAGAATTTTGTGAGAAAAAGCGTGAGCTGAATTATCAAAAAGGATTAACTGAAGCAAACTTGCAATTGAGAACATATTTAACTATTTTAAAAGATTGGTAATCAAATGATATTGAAAAGATTGATTATGTATTTTATAATACCGACAGGGGATTTTTTCCCTATTTTATCCGTCATTACTTGGTTATAAAATGGACAAGTCTTTGAAAAGCTGGGTGTTTCTGGCTTGCTTTTTGGGCGTTATTTTATGGACGTACCCCCCATTCTGATGCCATTTTGATATTTGATG # Right flank : TAAATTATCGTAAAGAGAGTTTATACACAGCCTTTCTTCAGCCTGTACTGACCGAGGCTTGTAAATACTCGAATATTTATTCACAGTCAGACAATAATTCCATAAGCCGCACCTTGCAAACATCGCAGAAACAATTTTGCTCAATGCTCACAGATTATGACATTGTTTTTCGCAATTATCTGGCAAACGAGCTGTTTTCCGACCTGATATCGCCTGAAGCAGCATCCACTAAAAAGATTATTGAACACATGATTATCAAAATGCAGTGGATTATGATTGAATACACGGCTATACGTCAAAGTCTTTTCTTGTGGTACAGTCACAATGCCAATAGTTCGTTGACATATGAAACCATCAGAGAGCATATTGTCATCATCTCACGCATGACAGGATATGATGATGACATACGCGAATATCTTGAAAACAGCTTTGCAAAGCTCATATGGGATTGGGGGCTACGCCGCACTCATTATGGTAATTAGAAAATAATTACAAAGGAG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCATTACCTATCTCCGAGTTAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 64814-64236 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOT01000009.1 Ligilactobacillus ruminis strain BIOML-A1 scaffold9_size78438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 64813 28 100.0 33 ............................ TGACGACGTTACTATCAGCTGGCCACCGTCCGG 64752 28 100.0 33 ............................ CTCCCTTTGGGGTCGTTGGGCTATGACCTCAAA 64691 28 100.0 33 ............................ TTAAAGTGCGGGCTCTTTTTGCAACCGAAAGCG 64630 28 100.0 33 ............................ TCGATTATACAGGATTCATGACAACCACGGCAA 64569 28 100.0 34 ............................ TATTTTCGATGTCGTCATCCGCTTTTTGTCTCAG 64507 28 100.0 33 ............................ CACAAGAAGACGTGGAAGAGAGCATATCAGACC 64446 28 100.0 33 ............................ CAAGGTCTCCGTCAGCGTTTGTCTTGATGTCTA 64385 28 100.0 33 ............................ TTGGTGGTGGGATAATGAACATGATTTTCTCTA 64324 28 100.0 33 ............................ TGAAATACAAAATCACGTGCAGAACATATAGGG 64263 28 89.3 0 ........................T.AT | ========== ====== ====== ====== ============================ ================================== ================== 10 28 98.9 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TGCGGGGGTGATCCTACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGA # Right flank : GAAGTTATCATAGATAAATATATGAAAAAATTAATGAGACATACTGTTTGAATATTCCTTTTCTGACAATTTTAAACCGCCATAAAACGACAATTTAAATCCACCTTTGACAATAAAATTGATAAAATACTTAATTGCCGCAAATTTGCGGTAATTAGGCTTTTTTTAAAGCGTATACTCAAGTTATAGCTGAAATTTTCGTATTGTATTGGAGGAATTCAAAATGAAGGTTAAAACATTTTTATCTATAGCATGTTTGAGTCTTATGCTTGTCGGTTGTGGTAACGATACTGTTGACAATTCTGGCAAAAGTGTAGAATCAACCAATAATAAAGTTTCGAAAGTCAAACACAAGAAACCTAAAAAAGATCCGCGTGAGGTCGTAAATGGAGAACTTCTTAAAGTCGGACAATGGTGTAATGATGATGAGCAAGGGAAAATGGAGTTGTACAAAATTTGTGTGCCTGGGACGGTAATTGATGATGGATCAATCAAGTGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 65756-65300 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOT01000009.1 Ligilactobacillus ruminis strain BIOML-A1 scaffold9_size78438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 65755 28 100.0 34 ............................ TAGCGCAGAAAATTGCGAGTTTGTGAGGTGGATA 65693 28 100.0 33 ............................ CGGGAACGCTATCAAGAATTACGTACTCTTCGG 65632 28 100.0 33 ............................ TTGAGGTTAAATATTTTGGTGGTCAAAAAACCA 65571 28 100.0 33 ............................ TAATCGTATTGAATCCCTCGTTGATTCTAAAGT 65510 28 100.0 33 ............................ TCAATGTACCAGCTGTTGCGGTTTTGTTTTGCT 65449 28 100.0 33 ............................ TGTTGCCCCCGTTTATCCGTCTGATAGCGTTAA 65388 28 100.0 33 ............................ TGTTGACATCTGGAATCTGCGTGGCAAATCAAC 65327 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTTACCAATGATGTCATTATATCTTTGGCAGCAGTAAAGGGAGCCACTGGTGATCGGTTCTACAAACTTATAAGGACAAATAACTTGATATCACCCAAGATAGTTGCGTTAACAGGTATTACGAATGAAAAGCTTGAGAGTGAGGGCGAGGACATATATGCTGTTTTGAATGAATTTAAAAAATTCATAGAAGATGATATACTGATAGGGTTTAACATAATGAACTTTGATTTAAGATTTATTAATGCCGCAATGATAGCAGCCGGAATAGAAGAAAAAATGAATAATACAATTATTGATTTGTTGCCAAGGATAAAGAAGATAGATTCATTTTTGGATAATTATCGTTTTGAGACTGTGTTAAGGGCCTATGGTGTAACTAATAATCTTCCGCATAATGCTTTGTCAGACTCCATAGCTTGTAGGGAGTTAGCTGTCAAACTAATGAAAAATGGGAAGTTGTCATTTTAGAAATGCCGATATATAAGGGATCTTTTAGT # Right flank : TACCGTGTTTATGATTCTTTAGGTAAACCAAAGGTCGATTATGATTTAACTAATCATGGCGCACCAAAGTATCACCCAATAGTACCGCATGCGCATGACTGGCTTGCCATTAAGAGTGATGGTGTTGTAAAATATGAGCGGAAAAAAGAGTGGCGTGAATTAAACCAGAACGAGAAAAATAATATAGAAAGGTGGTTAAAATCCCATGAACGCAAATAACCTTAATACTCTAAAAGCTTTAAAAGAAGCAATGAGTTATAATCTTGAAATTTATTTCAAAATAAATGGTAAGCAATACATGATTCTACCTGATCCAAAAACTGGGATATTAGAGGATGGATGGCTTTTAGTTTGTGAAAATTCTCTTTTGAAAAAGGGATCCACCTTTGATATTTTTAACTATAAAATTAATGGACAGTTACTTAAGGATATTTGGCCAGAGGTTAAAGATGTTGAAATGTAACAAAAAAAGAGTGTTTTATATGAGTGTTCCCCGTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //