Array 1 185915-185153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAADZH010000015.1 Salmonella bongori serovar 48:z81:- strain 2014K-0377 NODE_6_length_225244_cov_73.3767_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185914 29 96.6 32 .............C............... TAAAACCAGGAATTTTCACCTTGTTCCTCTGT 185853 29 96.6 32 .............C............... CAGGCCTGCCTCGATATCACTGGAGCGATCTA 185792 29 93.1 33 .....T.......C............... GTCATACAGCTTATTCGATCGCGTCACGCCTGC 185730 29 100.0 32 ............................. TTAGCGACCCGGATGTGCTGGCGCTGCTGGAT 185669 29 100.0 32 ............................. TTAGCGACCCGGATGTGCTGGCGCTGCTGGAT 185608 29 100.0 32 ............................. TCCACAGGCGCGGTGCTACCGCCCATCAGTAC 185547 29 100.0 32 ............................. CGCTTGTGAGCTTGTTCTTTGGTAAACCCTGC 185486 29 96.6 32 ............................A CCGCATCAACCGCCACACCTGGCAAAAACGAC 185425 29 93.1 32 .............C..............A CACCCTTTCCGTTTAGATACGCCTCGGAAATC 185364 29 96.6 32 .............C............... GGGTTTTAGGTCGGGATGAGCCATAAATCGCT 185303 29 93.1 32 ............TC............... CGGAACTGGTTAACGAGGGCGAACACGCGCAA 185242 29 93.1 32 .............C.....A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 185181 29 72.4 0 ............TC.......C.TTTA.T | ========== ====== ====== ====== ============================= ================================= ================== 13 29 94.7 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TGCCAGCCATTATTTTCCGCGGATGGCGGAAAAAATGCCGATCGAGATGTACTGGCAACAGGCGCTCATTAAAGCGCGGAAGGCCATTACGCTTTTTCCCACTGCGGCGAATGTATCTGCCTTTACGGGTATAGAAACGCTTTTTCCTTTTATTCAGCATCCCACGCCGCTACAACAAAAAGCGCTAACGCTGGATATTCACGTGGATGGTGCCCAGCTCTTTATTCTGGAAGATGTCACCGGGGCCGGAAAAACAGAGGCGGCGCTTATCCTGGCCCATCGGCTGATGGCGGCAGGTAAAGCGCAAGGGCTCTATTTTGGGCTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGCATGGCAAATAGCTGGCTGGCGCTGTATCAGCCGGATTCTCGTCCCAGCCTGGTGCTGGCACATAGCGCACGTCATTTAATGGATCGTTTTAACCAGTCTATATGGTCGGCCAGTCTTTTCGGTACGGAAGAGCCTGATG # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCGGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195150-194511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAADZH010000015.1 Salmonella bongori serovar 48:z81:- strain 2014K-0377 NODE_6_length_225244_cov_73.3767_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195149 29 100.0 32 ............................. CGCGTTTCATAGGCTCACAAAATACGCGCAAA 195088 29 100.0 32 ............................. CCACAGCAGATAGCTCAGCCATTGCAGCCAGT 195027 29 100.0 32 ............................. GGCGGCATCGCTGTAATAGGGTCGCTGATCGC 194966 29 100.0 32 ............................. CTAACGGTTCATATGAATGCAGGCGTTTATCA 194905 29 100.0 32 ............................. ACAAATTTATTTATCGATTCCATGAATTTAGC 194844 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTAGGTTACAC 194783 29 100.0 32 ............................. TTCATTCACAGGGTTAGTGATTGTTATTCACT 194722 29 100.0 32 ............................. TGCCGATGAGCGCTCCATTAGTTAGAAACTAT 194661 29 100.0 32 ............................. TTCGCTCGCTTGCAAATATTTATCAGTCCCAA 194600 29 100.0 32 ............................. ACTACGAATACTCAGACGTCGTAGACTCCTAT 194539 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGAATGAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCACTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATATGCTGTCCGTTCTACGGATGGCCTGTCGTCGTGTGTAATTTATCTATCATCTTGCGTTCGCTATTTCTCCAAAAAATTCGAGGAATGTATAAAGTAGCTGAATAATTTTCCATAGCGAGACATGGATCACACTATTTTGGTGAGTTTAAAGAAAAAATCGTTCACTGAATTTTTTTGTATCAAAATCAGCTGATTAGATCTTCTTTAAGAATTTAAATTTGTTGCAATTATGTTGGTAGGATGTGGCGTTGATAAAAAACACTGAATAAACAATTAGGTATATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTAAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCATCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //