Array 1 68761-67449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDD01000012.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000222 CFSAN000222_contig0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68760 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 68699 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 68638 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 68577 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 68516 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 68455 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 68394 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 68333 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 68272 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 68211 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 68150 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 68089 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 68028 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 67967 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 67906 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 67845 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 67784 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 67722 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 67661 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 67600 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 67539 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 67478 29 96.6 0 ...............A............. | A [67451] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17140-16137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDD01000013.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000222 CFSAN000222_contig0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17139 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 17078 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 17017 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 16956 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 16895 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 16834 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 16773 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 16712 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 16651 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 16590 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 16529 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 16468 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 16407 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 16346 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 16285 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 16224 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 16164 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //