Array 1 38476-39164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKT010000014.1 Bacillus thuringiensis strain 871Blist1 NODE_14_length_159876_cov_60.909824, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 38476 32 100.0 34 ................................ AGTTGAGTGAATTAATGCTCGTGAGTGATTGTAC 38542 32 93.8 34 ...........A......A............. TGTATGATTACCTTAGCAAATTCAACGATAAGTT 38608 32 93.8 34 ...........A.......T............ TTATCTTTATCTACTGCAACTACACCAAAATTAT 38674 32 93.8 34 ...........A............G....... TATTAATGTAATAGAAAAAGAGAAAGAGACTAAG 38740 32 96.9 34 ....T........................... CTAAAATTAGATTCCATGACTTACTACATACCCA 38806 32 93.8 33 ...........A............T....... ACTCCTATTCATTTTTCAAAGATCGTGCTTCAA 38871 32 90.6 35 ...A.....C.........T............ TTAACACGTAAGAATCCATTTTTAGAAATTACATT 38938 32 93.8 33 .........C...A.................. ATGCCGATCGGTGTACAAGCCGACTTCATTAAC 39003 32 96.9 33 ...........A.................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 39068 32 93.8 33 .........C.........T............ ATAATATCACACTTTTGACAAAATTCAGTCATG 39133 32 87.5 0 A.T......C..C................... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.1 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTGGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGAATCAATATATTAAGGGTATTATGAAACTATACATTTTAGTTATTCAATTAGGTAATAGCTATGAAAATAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAAGCCCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTTGAATTCTCATGCTTTATAATGGTGATTTATGATTTTTATACAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAACGTATTTTTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTAGAAGCATCTATATCTACAGTATCTAATACAAAAGTAAAAAGTATAAAATGGAGGGAGATTAAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATCGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATAATTCCTTACAAGGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCATCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 6.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 46227-47110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKT010000014.1 Bacillus thuringiensis strain 871Blist1 NODE_14_length_159876_cov_60.909824, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 46227 32 65.6 35 AGTCGTA.C.C.G.....A............. CAGGCTGTCGCTTAACGGTGTGGCTGGAGCGTTTT 46294 32 90.6 33 ..........TC..G................. TGGTTATTTTCCATTCGTGTTTTATGCTCCTCT 46359 32 93.8 35 .........A..........A........... AACGCTTGTAGTTTTTTTTTGTGTATTCAAAAATT 46426 31 87.5 34 ..T.A............-.T............ GGGGATATGCCAGGGATTTGGCAAAGTGTTATTG 46491 32 87.5 33 A..A.................A.T........ GATAAAGGGTTTGCGATCATAAAAGATATTGTT 46556 32 90.6 33 ..........G........A.........C.. TATAAAAAAGAAGTATGTTGATTTAGTTAAGTA 46621 32 96.9 34 ..T............................. GTAAATATAAGGTCAGCATTTGCCGACGGCCCAG 46687 32 100.0 35 ................................ ACAATGGGAAAGTTTTAGGTTATGCACGTTTTAAA 46754 32 96.9 34 ..............G................. GTAAGAAAACATGTGAGTACATTGGCACAAATGG 46820 32 96.9 35 ........................T....... CAGTCTGTCGCTTAACGGTGTGGCTGGAGCGTTTT 46887 32 87.5 33 ..........TC..G......A.......... GATAAAGGGTTTGCAATCATAAGAGATATTGTT 46952 32 90.6 32 ...A......G........A............ TATAAAAAGAAGTATGTTGATTTAGTTAAGCA 47016 32 93.8 31 .........G...A.................. ATTAGACGAGATATATCCACAGAAGAATTAC 47079 32 90.6 0 .......T..............AA........ | ========== ====== ====== ====== ================================ =================================== ================== 14 32 90.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : GATCCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTAAGCCTGAGAAGGAAAAAGGTTCAGATACGTTGGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTAATCATATGCAATGAGCAAGTAATACAAATTTTACCAAAGAGGATGCGAAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAGCATACTTCAAAGCTTGGCCAGTACTCTTCTGCAAAAGTACACCGTTTACTGGATATTAAGCGGCACATTGATGAACCAAAAAAAATTGATAACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGGCGATAATTGATGGACTGTAACGAGGAAAACATTAGAATGATTGAAGGAAAGCGTATTTATTAAAAGGCTAATCAACCATTTATTAAAGAAG # Right flank : TGAAATTACTTGCTGCCTTGTCTAAATTACTTTCTTCGCATTTCAGGTGTGTGGAGTAAGACTGATAAAATAATTGATAGTAATTTAGTGTCTCTATTGGAGTAAGAGGACCTGTTTCAATTCATAAAGCAACGAGTGTTAATTCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTCAGCATGGGAGGGATAAAGTTTTAGATACGATGGAGATGAAGCATCGTTTTGATTTCGGAGTCTATGTTTTTTTTGTGGGATCATAATTCAAAACCTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGAAATATTGACGAATTAAAAACAATCGATGATTATACCACTGTATTGGTATACGAATTAGATGATTTAAAAGTTGAGATTAATAATGGGATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAGGAGATATTCTATCAATTTATTAAAATAAAGTCG # Questionable array : NO Score: 6.44 # Score Detail : 1:0, 2:3, 3:3, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //