Array 1 36638-39247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJKHM010000015.1 Bifidobacterium longum subsp. longum strain JCM 7050 NODE_15_length_56750_cov_96.5789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 36638 36 100.0 29 .................................... AGTAATGCGGTAACGTTGGCTAACCCGTA 36703 36 100.0 28 .................................... CCCTGTTCTTTTTTGTTGTCATTTTTGC 36767 36 100.0 28 .................................... CATTGGTGAACCGTATCGGCGGCACCTA 36831 36 100.0 28 .................................... CGTCCGTAGGCGTTGACATATGCGGCTG 36895 36 100.0 29 .................................... AGGGGTTTCGTGAACTGCCAGAACTGTCA 36960 36 100.0 29 .................................... TCAAGCACCAGAGGACAGCACAGAGACAC 37025 36 100.0 29 .................................... GCGTGCCCGTTTTGGTGTTGACGGCGGGG 37090 36 100.0 28 .................................... CGGTAATCAGCTCTCCTAGGGTGACTGT 37154 36 100.0 28 .................................... TAGTACACACACGCCGCATCAACGCGAC 37218 36 100.0 28 .................................... TCGAAATTCAACGTGAACATGCTCAGCA 37282 36 100.0 29 .................................... GTTGCCGGAATTGCCGGTGTTGCCGGAAT 37347 36 100.0 28 .................................... AAGCCAAACGAGTTGTCAACCTCGAAAT 37411 36 100.0 29 .................................... CAACGACGCCAACGTGTTCCAAGGCTCAA 37476 36 100.0 29 .................................... TTCTTAGCTTGCTTAGACGTGAGCCGAGA 37541 36 100.0 28 .................................... CCAGCGTGGTTGCAGTCACTGGCGATAC 37605 36 100.0 29 .................................... GTGAGGGACACCTTCATCCGCATACTGCA 37670 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 37735 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 37799 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 37863 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 37927 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 37991 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 38055 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 38119 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 38183 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 38247 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 38312 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 38376 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 38440 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 38505 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 38569 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 38633 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 38697 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 38762 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 38827 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 38891 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 38956 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 39020 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 39084 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 39148 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 39212 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 41 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CAATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //