Array 1 31554-32904 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHI01000023.1 Ruminococcus sp. AF14-5 AF14-5.Scaf23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 31554 32 100.0 34 ................................ TTCTGGATAGCCTGTTATCCGGAATCAGATAATG 31620 32 100.0 34 ................................ ATGTGTGATGCTTTCACATCCTCATCCGCTACTT 31686 32 100.0 34 ................................ AACAAAGCGTCTGGACATGAAGGCGGTGGATTTG 31752 32 100.0 34 ................................ TTTCTTATTCTTTTCTGTTACCCGGATGTTGTTT 31818 32 100.0 33 ................................ GCTTTCAAAGTAAATCCCTCCTTTCCGGTCTTT 31883 32 100.0 33 ................................ TACAGAATTTGGAGTTACAGAAGAATGGTTGCG 31948 32 100.0 33 ................................ ATATTTTCCTCATCATTCTGTATAGACGATATC 32013 32 100.0 35 ................................ TTGATGCATCAAAAGCTTACATAAGATCCTATACA 32080 32 100.0 35 ................................ TTTAGATGCGTGCATGGAGCGCTGGGTGGAACTTG 32147 32 100.0 36 ................................ ATTGCTTCAAAATATGTTCTCGCGGCTGCTTCCGTC 32215 32 100.0 33 ................................ TCTTTGTTGTGACATATGTGGCAATCATACTTG 32280 32 100.0 33 ................................ ACGAAATCCTGTCCCCAGCGAACCGCCTGTCCC 32345 32 100.0 34 ................................ GCTGAAAAAGGAAACTAGTTCACTAAGGGAAGAT 32411 32 100.0 33 ................................ TTAAAAATACTCGAAAACAAATACCATAACAGG 32476 32 100.0 34 ................................ TTCGAAAGGCAATAGATGGACATACACTTAAAAT 32542 32 100.0 33 ................................ TACCTCCCACTATACAATAATTGGGGGAGATTG 32607 32 100.0 33 ................................ TGGTCAGTGCGCACATGGGAGCCAGAACAGGTG 32672 32 100.0 33 ................................ GAACCAGAAGTACAGAAGGTTTTACAGAAATGG 32737 32 100.0 36 ................................ TGAATAAGATCCCTGTCCAAACACTGCAATAACTGT 32805 32 96.9 36 ...G............................ ATCATGCACCATGAAACGAACGCAGCACACCATGGC 32873 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.7 34 GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Left flank : AAAAGATGCTTGTTCTGATAACCTATGATGTGAATACAGAAACGGTAGCCGGAAAAGCAAGATTACGGAAAGTAGCTAAACAATGTGTTAATTATGGAAGACGTGTCCAGAATTCAGTTTTTGAATGCATCTTGGATAGTGCACAATGCGTTACCCTTAAGGCTGCTTTGGCGAATATTATTGATGAAAAGACAGATAGTTTAAGATTTTATTATCTGGGAAATAATTATAAATCTAAAATAGAGCACATGGGAATAGAAAGAGGAATATCAGCAGATGATATGCTGATATTATGATGAAAAAAGCTTGTGAAGTTAATTAGGAGATGTGCGAATGATAAGAACACATAAATTTCCTAGAAGACTCGCACTAGAAAAAAATAATTGTTATCTGATAAATGGTAGCATATAATTATTTGTGTCAGTAATTACAGGTGATTTTGAAATATTGCTTTGGCTAATAATAACAAAATTCAAATGTGATTATTAGCAAAAATTGCT # Right flank : TTTGAGGAGATGATAAATTGTTTCAAAATTATGGGACGTCTATGGAGATGTTATTTAAAGGGATTTTGATGCTTGCAGTCTGTTCGGGGTGTTATCTGGTTTGGTGGGGTGTGGCTTTTTATCCGGAGAGACATGTTCCGTTGTGGCTGTCGGGAATTTTGCTGGTGGCGACGGCGGCTTGTGGGATTATGGCGGTAAACTGGATGGCGCAGGGCATTTTTCAGGCAGAGAAGGTGCGTGCAGGAATTCCTGGTGGATGGATTCTGGCTGGTGGTGTGATTGGTTATGTTGTTTTGTTGGTAATCAGTAATATTATTTTTCATCGTATGGTGACGACGGAGTTGTTTCTGATTATCGGATGGGCGGTTTTGAATCTAATCACAGTTGATACGCTGTATGCCAGTGGATTGTTTTCAGCTGGAGTTTCTGTTGCATTTGTGGTGTTGACCTTGGTTGTGGTTGTGGCGAGTTTGTATTGTTATATGATTTATTATGAGCTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCTTGCGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA // Array 1 3923-3589 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHI01000142.1 Ruminococcus sp. AF14-5 AF14-5.Scaf142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3922 28 100.0 34 ............................ AATGGAAACGGCAAAAGCATCTGACCTTATGAAA 3860 28 100.0 33 ............................ ATGTCGTGCCATCTCTGTTGTTGTCATTTCGTC 3799 28 96.4 33 .....A...................... GATGATTCGGGAAATGATGGAGTATATCAGGAT 3738 28 100.0 33 ............................ GGGAAAAACCGGGTTTCGGCTGTTCATCTGTAG 3677 28 100.0 33 ............................ GATTCCGGGTTGATTTCCTGACCATACAGATAC 3616 28 96.4 0 G........................... | ========== ====== ====== ====== ============================ ================================== ================== 6 28 98.8 33 TTTCCCTCACTATATGTGAGGGTATATC # Left flank : ATACGCATCAGCATTCCGGCGCCGGTATTTTTGTATGTGTCGTTGTCTGAGACGATTTCCTCAACATTCGGAAATAACTGGTTTCTCATCTGAATGCCGCGGACGTTTTTATCAATATAGATTCTTCTGACATTCGGGAAAGATTTGTTGATATCCCGCAGATAGTAGTATTTGATGCCTGTATACGGTGCTTCTCCGAGAAACTTGAATTCGGTTGCATCTGGTAAGACGTCAATATCCTTAACGTACATATCGTTGCCATACAGTGTGGCTCCTTCGTATAACTTTTTTGTAAACTTCATGTTTTTTATTCCTTTCTTTATGATTTTTTTGTGTTTCAAGATTAATATGCTGAAAAAAAGTAAGCAAAAAAATCCGCAAAAATAATCGGCTGCGGGATTTTTCAGCATATTAAATATGTAACGAGGATGGCGAAAACCTTTTATGCAAATTGCACAACGAGGTATTTACGGTGGCTGGAACCCGCATAAACACTAAGT # Right flank : AGCATATCGTTAGGCGGGTAAATTAAGNNNNNNNNNNTATGTGAGGGTATATCAGCATATCGTTAGGCGGGTAAATTAAGTTTTTGCATACCTCGTCACAAAAAAATAAAAAAATTGCCAAAAAATAATATTTCTTAATCATTTTCCAGCATATTGATATAGAACACAAAAAAAGGAGGAAAAAATGTTTAACGTATTATATGAACCGTGGATGGGTGTGGTTGACATGAACGGAAACGAAACACTAGTTGGATTACGTGATTATCTAGTCAATGCTCATCTGTATAAATGCAGTGCAGAAAACAAACAATTTGCAGTGCTAAGGCGACTCCAGCAGCGGCTGGCTGAAACATTTGTGATGGATATTTTTGGAATCAACATTGATACTGAAGCAGCTCTGATAAATGCTGGACATTTTGATGCAGACGAGATTGATGCGTATATCAGGAATTGTGAGAATTCAGGTGTTTCATTTGACTTATTTGATGAAAATAGACCAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCCTCACTATATGTGAGGGTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 3920-2367 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHI01000066.1 Ruminococcus sp. AF14-5 AF14-5.Scaf66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3919 28 100.0 33 ............................ GTTGGACTGATAGGCAAACAGGGCGAATTTGTG 3858 28 100.0 33 ............................ GTGGGTTCATATATTTATCATTCATCACTTGCT 3797 28 100.0 33 ............................ AATGAGCTTGAGCGTTCCGCTGTCCATTTTTGT 3736 28 100.0 33 ............................ GCCGAATTTGAAGCGATTACAGCCGATATTGAA 3675 28 100.0 33 ............................ GATTTTCATTGGTTAAAAACCACCAATGAAAAT 3614 28 100.0 33 ............................ AATCACTAAATCACCTGTCAGAAACCGGTTTTA 3553 28 100.0 33 ............................ GCTGTGGACATCCCACAAAATCCCTGATAAATC 3492 28 100.0 33 ............................ CGACCATAGCAGTGATAAAACGGGATGCTAAAG 3431 28 100.0 33 ............................ GTGCTGTCTATCGCGTCCAAATTCTCTACGCTG 3370 28 100.0 33 ............................ GGCTCTCTCAGACAGCAAAGAGGGCGACCACCG 3309 28 100.0 33 ............................ GATTCAAAAGCTGAACATATACCAGAGGGGGAA 3248 28 100.0 33 ............................ GACCGGGAATATACATAGTAAACCGCGCCGTAT 3187 28 100.0 33 ............................ GCCGTCCTGTTCTCGTTCAAGTATCTCTTGAAG 3126 28 100.0 33 ............................ GTCACACAATGGCGGTCAAATTTTATGACGAAC 3065 28 100.0 33 ............................ GGTTGCAAAAAACCGAAACGCAGTTGGAAAATG 3004 28 100.0 33 ............................ ATGTTGGCGCGGTCAATATGGCGTTCTTTGGAT 2943 28 96.4 33 ....................A....... GGTTATGACGGTCAGCCGGTATTGATTTGGGAC 2882 28 100.0 33 ............................ ATATACGGGTTGCTTCGGGTTGTTGCTATATGT 2821 28 100.0 33 ............................ GTAGCCCATTCTTTTCGCATATTATACTTGCAA 2760 28 100.0 33 ............................ GACTGGAGAAATTACGGGATGAGAAAAAGGATT 2699 28 100.0 33 ............................ GTTTGAGCCGCTGTCAATCTACACTATCAAGCA 2638 28 100.0 33 ............................ GCGGCGCGGGCGTCCGTCACGTTGTCCAGACCT 2577 28 100.0 33 ............................ GGTTATACACAGTGCAATTCATTTTGTTTCCGA 2516 28 100.0 33 ............................ ACAGCTTGCGACGGCATTAGACCTCACCCCGGA 2455 28 100.0 33 ............................ ACCCCGCGAGGAAATGCGGGCGAGGAGATGACT 2394 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.9 33 GTTCCCTCATTATATGTGAGGGTATATC # Left flank : GGACACTACTTTAATGGCGTATGCGATAGATGCGTTAAAGTATTATGATTTGAATGATGGATTTGACCTAAATTAGCCGTCGCATACTTGTAACTTCAGTCGTGAGTTAATTAGACGACTCATAAAAATATCGTTTACGACATTTTGTTTCTCTACGTTTCGGCGTAGAGATTTTTTTTATTTTCATTAAATTTTTTCGTAAAAAATCGTCCAATTTTTAATTTTTTCGGCATGTTAAATATGCAAGAAATTTAAATACAAATTTTTACAAAAGGAGGTGTCTTGTATGGAAATTACTTCAAGTTATCAAGTAGAAATCTTATCAAATGCAGATATGAAAAGCACAGTGCAGATTTACCGCAGGGCACTTGCTTTCGTTATTGATGTATGCAATAAAGAGCTTTAGCATATTAAATATGTGGATGAGAGATTAGAAAGACATTTGTGCAATTTGCACAACGAGGTGTTTGAGGCGGCTGAAAGCCGCATAAATACTGAGT # Right flank : GAAATTGGCAATGACATCCTTCAGGCATCAAAAAATATAAATGTAGTTGACGATAGTATCCCGCAAATTGCCTAAAAGGAGGTGAGAAAAATGAGTGGAGACACCGAATTCTGAAACACAACAACGCCACATACACAATACACAACATTTACATCCCGGCAATTCTTTTGCCGGGCTTATTTTTACGTTTTTCGCTATTTCAAAAATCCCGCATATTAAAACCGTAAAAATATATTTAAATCTAAAACAAAGAAAAGGAGACTTAAAAAATGAGTAAAAACAAATGGATTTACAAAAACCTCAAAAGTCCGGAATTCAACCTACTTGCAGAAAAGTTTGGTGTACATCCGGCCATCATTAAGATTCTCGCTGACCGTGGTGTGCAGGGAGAGGACGCTGTAAGGGAATACCTGGAAGCAGATATTGCAACCGTTTCTGACGGCTCAGAGCTGACAGATATGCAGCGCGGCGTTAATATTGTCTACGACGCAGTGCAGGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCATTATATGTGAGGGTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 9626-8801 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHI01000066.1 Ruminococcus sp. AF14-5 AF14-5.Scaf66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 9625 28 100.0 33 ............................ GAACGAGCAAACGATTCGGGGCGTTTACACCAA 9564 28 100.0 33 ............................ GTGGTCTTTGTAAAAGGTCTTTTCTGCAGTAGA 9503 28 100.0 33 ............................ GGGGAATGGATAAGCGCGGCTCCTCCATTCCCT 9442 28 100.0 33 ............................ ATTGGATATGTATTAAACGTGTTATCATTTATT 9381 28 100.0 33 ............................ GCTGTCGTGTTGTATTAGTCTCATATCTGTCTA 9320 28 96.4 33 ...................A........ GACGCACAGACGGCATACACGCAGGCGGCAGAA 9259 28 96.4 33 A........................... GTGGATGCCAGAAGAACTCTGGCGGGAACGTCT 9198 28 100.0 36 ............................ AATTAATAATATAGAAGGAACACGTTTAACGTTCAA 9134 28 82.1 34 .C.......T.A..C........A.... GCAGACTCTGACCGGATACTATTCTCATTATGAC 9072 28 85.7 33 .........T.A..C........A.... TGAGCTGAATCATTTGCTTTTAGTCTGAATATA 9011 28 85.7 33 .........T.A..C........A.... GGGCAATTTGGGACAATTGATAGAAAAGGGGTT 8950 28 85.7 33 ...........A..C....A...A.... GCATCTGACTCATTTTCAAATCCCTCTTGAAAT 8889 28 89.3 33 ...........A..C........A.... ACAAGAGTTCGAACAAAAGCACCAGGAGCTGTA 8828 28 85.7 0 ...........A..C.......CA.... | ========== ====== ====== ====== ============================ ==================================== ================== 14 28 93.4 33 GTTCCCTCACTGTATGTGAGGGTGTATC # Left flank : GTGTGCTCGGAAAATTGTCTGATAGATATATTAATGTACGAGAGTCTGGAGAGCCAACTGTACAGATTGCAATTCTGGATGAGGATGAAATGAAGGCGGCAAAAGAAAAAAGAAACAGAAACGATAAAAACAACAGCGAAATTAATGTAATTGAATTATTCAAAAGCAGCGTTGTGACTGTTCCGATGCATTATCTGGATGGTTTTGACGAGGGAGAATATGGAACTGGAATTTTTAGAGATGTGAAAATTTTCAGCTTGAATGATATTGTTAATCCTGATGGTGATAAAAAGATTTGTGTTGATGGCGAATATGGATTCGGGGTTTTGGATGTGTAAAGTTTGGTATACAAAATAAATTTTTTTAATATTTTTTACGATTTTTTGTTAACGAATGAGATTTTTCGGCATATTAAATATGTGACGAGGATGACAAAAGGCTTTTGTGCAAATTGCACAACGAGGTATTTGGGGCGGCTGAAAGCCGCGTAAATACTGAGA # Right flank : TGTGTTTTTATTTTAGTCGAATGACGGCCGACGAGGAGCCTGCAAGGGATATAACCCAAAAAACCCGCAAAAAACTCTGAGCGCCTGATTTTTTCAGCATATTAAGTATAGCAAAAACGAAAAAAAATAAGGAGAAAAAAGATATCAAAAAAAACGTAAAGTTATACCCAGAACGGATGCCGGAAAATGTTGCTGTAAAAAAATAAAGGCGGATGGATGCCGGGAGAGAACGGGAGAGCGGCAAAATATAGAGATTCGGGGGTTGAAAGATAAGGAGGATTAAAGAAGATGAAAACAGTTATTGGTTATTTGGCTTTGATATTTGAAAGTATTATTATGTGTAGCATGGGGTACCCCATAACCACTTGGCAGTGGTGGGCTATAGTGATACTTACTATGTTATATGCATTTGTAACGAAATGATAATTATTCGGTGAATGCGAAATGTGTTTTTTCTTGCGAAAAATCCTGCATACTAAATTTGCAAAAATAAAAAACAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCACTGTATGTGAGGGTGTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 12678-13743 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHI01000066.1 Ruminococcus sp. AF14-5 AF14-5.Scaf66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12678 29 82.8 32 TA...T..T......C............. GAGCTCCGTGGAGCGCTGGTCACACGGCGGGA 12739 29 96.6 32 T............................ AATACTGGCCGGCCGGCGGCTCCGCCTCCGTC 12800 29 100.0 32 ............................. TTTATCGGCATAAAATCTTCTTGCTTTCTTTC 12861 29 100.0 32 ............................. TCAATCTGTTCTGTTAACTGCTCATACTGTTC 12922 29 100.0 32 ............................. AGAACAGACCTCGGCGGCATACAGAAAGAAAA 12983 29 100.0 32 ............................. CCATTTGGTAATAATGTTGGGAGCGGCATTCG 13044 29 100.0 32 ............................. GAGGTCGGCAGATGTACAGCCGCGCCCCAGTG 13105 29 100.0 32 ............................. CCATTTGGTAATAATGTTGGGAGCGGCATTCG 13166 29 100.0 32 ............................. GAGGTCGGCAGATGTACAGCCGCGCCCCAGTG 13227 29 100.0 32 ............................. GGTGTTTTTCATATTGCATGATATTAAAAATT 13288 29 100.0 32 ............................. TTTTTTTGCAGGAGTAAAGGGGCAATTCGATT 13349 29 96.6 32 T............................ AACTTTACGTTCTGCAAAAAATCCGGGAAAAA 13410 29 100.0 32 ............................. TTTTGCCAGAAATTTTCGCCATTTCGGCGTTC 13471 29 100.0 32 ............................. TTCAGCAATATCAGACAATGACAACGCGCAAT 13532 29 100.0 32 ............................. TGTTCGCGCTGTTTCTTCACTATGTTCGGCGG 13593 29 100.0 32 ............................. GTATATGCTCTGTTGCGTCTCACATAGTCAGC 13654 29 96.6 32 A............................ CCGTGTGTAAATCGGTCCGTTTTGTTCTGAAC 13715 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 CGATACACCCTCACGTATAGTGAGGGAAC # Left flank : GCCTAAAAATTCCATTCATCAAACACCCGGCAACGATTCCTGTCTCTAACATATGGTCAATTAATGATTTTTTTGGATTTAGTTTTGCCCATAATTTTTCTGCTATCATTTTTGTCAACGCGTTTTCAGGTTTTACAATCAGTTGCAGGCCATCAAAATTTTCAAATTCGTATGATGGATAACCAATTTTTTTTACGCTGTATTTCTGTTCATTTTTATCCGTATATATTAAAACGGCCGAAATACCATCAATATTAACAATGTCCTCCCATAATCTGTCACGTGTTCTGGCTGATGCGCTAGAGACGAATGTGAATGGGGCAATCTCCTGAGAGAATAACGATAATTCACCGCGGATGCTGTCTGGTGCGTGTTCTAAATGAAGTACAAACATTTTTTTTCTCCTATTTTCTTTATTTATATTTAATATGCTGAAAAATAAGATATTTTTTTATATGTATTGAAAAATAAAAAACAGCCGATATAAAATATCGGCTATT # Right flank : CACTCAGTATTTATGCGGCTTTCAGCCGCCTCAAATACCTCGTTGTGTAAATTGCACAAATGTCTTTCTAACCTCTTATCCACATATCTAATATGCTGAAATTAACATTTTTTTTGTCACAGAATTTTTAAAAATATTTTTCGATTTTTCNNNNNNNNNNTTTTGTCACAGAATTTTTAAAAATATTTTTCGATTTTTCTTTTTTCCTACTTACCGTAATTAATCCCCAGCTCTACGCAATCCTCAAGATTCCATAAACCAACATTAACAGGAGTTTTTGCGTTGATGTCATCAAACTGGAATAATGTGGACAGATTTTTTGCAATTCGTTTCATTAGTTTTCCACTTACAAATATTTCTCTACATGCAGCACGCATATCGTCATCATTACCATGCTCTGCTGCTAACCGAAACGCAGCCGGAAAAATAAACTCTTCCTTATATAAATCCGCAATATCAAATACAAATGACCGGCTACTGCCATTGTGAATAAAACCAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATACACCCTCACGTATAGTGAGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //