Array 1 399394-400337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHJN010000003.1 Escherichia coli strain EF285 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 399394 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 399455 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 399516 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 399577 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 399638 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 399699 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 399760 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 399821 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 399882 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 399943 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 400004 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 400065 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 400126 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 400187 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 400248 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 400309 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 426037-427773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHJN010000003.1 Escherichia coli strain EF285 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 426037 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 426098 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 426159 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 426220 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 426281 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 426342 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 426403 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 426464 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 426525 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 426586 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 426647 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 426708 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 426769 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 426830 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 426891 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 426952 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 427013 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 427074 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 427135 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 427196 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 427257 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 427318 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 427379 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 427440 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 427501 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 427562 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 427623 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 427684 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 427745 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //