Array 1 930-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIW01000003.1 Salmonella enterica strain BCW_5844 NODE_3_length_440757_cov_4.57693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 929 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 868 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 807 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 746 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 685 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 624 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 563 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 501 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 440 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 379 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 318 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 257 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 196 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 135 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 74 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18554-17061 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIW01000003.1 Salmonella enterica strain BCW_5844 NODE_3_length_440757_cov_4.57693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18553 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 18492 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 18431 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 18370 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 18309 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18248 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18187 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 18126 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18065 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18004 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17943 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17882 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17821 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17760 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17699 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17638 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 17576 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17515 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17454 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17393 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17332 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17271 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17210 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17149 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17088 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-1172 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIW01000009.1 Salmonella enterica strain BCW_5844 NODE_9_length_218655_cov_4.43751, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 124 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 185 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 246 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 307 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 368 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 429 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 491 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 594 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 655 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 716 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 777 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 838 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 899 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 960 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1021 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1082 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1143 29 96.6 0 A............................ | A [1169] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //