Array 1 116571-116865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008713.1 Candidatus Arthromitus sp. SFB-mouse-NL chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 116571 32 100.0 34 ................................ TTATTTGTGAATTATTTGATATAAGTCGCACCTC 116637 32 100.0 33 ................................ GATTCTATTTCCAATGTTAGGCATAAAAAAATT 116702 32 100.0 34 ................................ AATAATTAAATCTGATGTTGGTTTTCTGGTCCCG 116768 32 100.0 34 ................................ AAAGATAGACTAAAAGAATTACGTCTTTCAAACA 116834 32 93.8 0 ..............................GG | ========== ====== ====== ====== ================================ ================================== ================== 5 32 98.8 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : CCATCTTATAGATATTCATCAAGAGTTTTAAATTTTATCGTAGGATTGATACAAAAAAATCCTAACAATATTAAAGAAGTCTTAAAGAATAAAATAAAAAAATAAGCTAACCCCAGGGGCAAAGGAATTCTTGGTTTAATTTATTAAATTAAACCTACTCCTATTTAGGAACCCAGCCTTATCCATCCCAAGTTAGCTTACATTTATATAATATGTACATATCGTGTATATTATTCATATACACTTACATTGTACAATAAGTAATTTATAAAATCAATATTTTGTAGGTAAAAATCTGTTTAACTAGGCTTATTTAAGTTGGTTATTTTACTCGGAAATATAAGTTTACATAGAATTTTTAGACGTTTCGCGAAGTTATATTAAAACTTGATTGTAGTAGAATAATTGGTATTGCTATTTATAGATGAATTATGTAGAATATTAGTGTTCGCAAAAATAGTATGTCTATTTATGATTAGCAGCTGTTTTTAAATTTAACG # Right flank : GTGTCAGACATATAATAAAACCCCACTTGAAATTAATCAGGTGGGGTTTTAAAATCTCCGTCTAAGTTCTACGACCTTTCCGATTATGTGTATGGGTTTATCTGCAATGTCATTTTTATCGTAGTACATTGGTTCGTACTTTGAGTTTAATGATACGAGGCTTATACCGTCCTTGTGTTTTATTATTTTTTTACATGTTGCTTCATCGCCATTAACGCAAACTATAGCTATGTCTCCAGAGTTAACGTCTTGTTGTTTACGGACTATTACGACATCTCCAGCATCCATTGTGGGAGACATCGAATCACCCTTGATTACGAGAGCAAAATACTCTCCTTGAGATGCAAGCTTAGGTGATATTTCCTCCCATCCTATGATTTCCTCAATCGCCGATATGGGTATACCAGCTATAACCGTACCAAGTATGGGTATTTTTACGCAGGCTTGTACGTTTAGACCAAGACCATTTTTATATGATATTAATTTAGCTGAACTAATAA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 738019-739499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008713.1 Candidatus Arthromitus sp. SFB-mouse-NL chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 738019 32 100.0 33 ................................ ATTCGTTCTCCATAAATGCATAACAACCAACAC 738084 32 100.0 34 ................................ AAAGAGAGCCTGATAATGAAGGTTTGACTTATTG 738150 32 100.0 35 ................................ TCTTCTTTGCCTAATTTCTGCATACTCCGAAACTG 738217 32 100.0 33 ................................ GCAAAAAATCACAAATATGACTGGTTCTTTTAA 738282 32 100.0 33 ................................ TTTTGCTATACGGAAACAAAGCATAAAAGTATA 738347 32 100.0 34 ................................ TAAAATATCACTCATATTAATACGACTATATCTG 738413 32 100.0 33 ................................ CTGTCTCTGTGTAAGTCCCACCTTCTGGTAATA 738478 32 100.0 34 ................................ ATCGATAATATATAAGGTTTTCATCTTAGCGTTA 738544 32 100.0 33 ................................ TATCTCATATAATGCATATAATACTATATTTAT 738609 32 100.0 35 ................................ TAATGCTTTTGGGTCTATATTGTTACTCTTAAAAG 738676 32 100.0 34 ................................ ATCGGCTCTATCTATATAATCTTTTTTGAGCCAG 738742 32 100.0 33 ................................ ATCAAACAAAATCACTATTTTATGTGGATGTGG 738807 32 100.0 35 ................................ TCAATTTCCCGTACAGTAAATCCTTTACCGTACAA 738874 32 100.0 34 ................................ CAGTCGGAACATCACCATTATTAATCACATCAAT 738940 32 100.0 34 ................................ TACAATACACGTATTATTTAGATTACAATCGTTT 739006 32 100.0 34 ................................ AATCATTGACCTATTTCCTCCTTAATAAAACAAG 739072 32 96.9 34 .........C...................... CAGATAAATTATATTGTTTTCCATTACATCTTTT 739138 32 93.8 33 .......T.C...................... CCTGTATGCATTAGGTGTCCTTTTATTATCAAT 739203 32 96.9 34 .........C...................... ATCTGAATTATTTTCGAGGTGTTAATGGATAGAA 739269 32 96.9 33 .........C...................... TCAGGCTCACCATTAAATTTTAATTACTTTATG 739334 32 96.9 33 .........C...................... TGGTAAAGTAGCATATTCTAAGGGAAATAAAAT 739399 32 96.9 36 .........C...................... CTAACCATTCAACAGGTGTATCAAGATAAGTATTAT 739467 32 90.6 0 ......T..C.....................A | G [739496] ========== ====== ====== ====== ================================ ==================================== ================== 23 32 98.6 34 GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Left flank : GAATATCCTCCATATTTAATGAAGTAGTGAGGTGATTCAATGCTTATTTTAGTTACATATGATGTGGGATTGAATTTTGATGATGGCGCAAAAAGACTTAGAAAAGTATCAAAAATTTGTGAGAATTATGGGATTAGAGTTCAAAATTCTGTTTTTGAATGTGTAGTTGATAATTTACAATTTGAGATGCTTAAGTCAGATATAGATAAAGTTATAGATAAAGAACGAGATAGTGTAAGATATTATAATTTAGGTAATTCTGGAAGAAAAAAGGTAATTCATATAGGTAATAAACATTCCATTGATGTTGAAGATGTTATTATAATTTGATTGCGAAGTATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGCAGAATAATTGGTATTGATATTTATAGATAAATTATGTAGAATATTAGTGTTCGCATAAGTAGTATGTCTATTTATGATTATCAGCTATTTTTAAATTTAACG # Right flank : ATTAGCTTAAAATAGTTACGAATTATTTGGTATAGATCCGTTGAGATAAACGGTTCTATAGGAGGAATAATATGGATAAAAAAATAAAGTATTATCTTGATAGAGGCATGGATTATGATATGGCTAAATATTTTGCAACAGCTGAAAGAACAATTATAGAAGTTATTCCAAATAATGATTATACATTGACTCTTAAATTTGATAATGATGAGATACGGAAATATGATTGCAATGATTTAATAGAAAAAGGAACTGTATTTGAATTTTTAAGTGATTATTATAACTTTAAAAGAGTATATCTGGATGAAAGTAACGTAGTATCTTGGGATAAAGATCCAAATATTGATAGTAATTTAAATTGGAGTAATAAAGTTGATTTAAGTTCTGACACTTTGTATGTTAAAAGTATTCCTCAAGATCTGGGCAAAATGAAATTGTAGACTATTTTTATAATCAGTTATACTTTGAACTCTGAAAATTACTTGGAAATGTAAATAGTA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACGCAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //