Array 1 1201-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZQE010000022.1 Streptococcus gordonii strain M5 Sgordonii_M5_DanaHsu_Sia_NO_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1200 36 100.0 30 .................................... CCGAAGAGCATATTATCTCAATCTCAAACA 1134 36 100.0 30 .................................... GTCTGCCATTTGTTTTGTCCTTTCTTAATA 1068 36 100.0 30 .................................... TAGAGGGCGCTATGGAACGTGAGAAAGTCA 1002 36 100.0 30 .................................... AAAAAAGTTTGTAAAAAGGGTTGACAAAGC 936 36 100.0 30 .................................... CTTGGCTGTCTCGTCTCTGATTAACTGGTT 870 36 100.0 30 .................................... CAACTGCAAAAAGTACGACTGGCGTGCGAG 804 36 100.0 30 .................................... CACTTTGGATAGCTTCTTATGCTGACTATC 738 36 100.0 30 .................................... CTTCTTTATACTTGTTGTACTCAGTTTGCA 672 36 100.0 30 .................................... CAAGACGCCGGTAAGGTTCGCTTCCAGACT 606 36 100.0 30 .................................... ATGGTTCTAGTATAGCACGGTATAAAATGA 540 36 100.0 30 .................................... CGTTTTTCTAAGATTGTACCGTTTTTATCT 474 36 100.0 30 .................................... GGGTGTACCTGTTGATTCAATGCGTGTTGC 408 36 100.0 30 .................................... TTGAGCAGGCTGAAAAACTTCAGGCGCTGA 342 36 100.0 30 .................................... TTGTAACTTTGATGTCCTTCTTAGTCTTGT 276 36 100.0 30 .................................... CTAAAACGTACTTATCAAAATATCATATCT 210 36 100.0 31 .................................... ATGCAAAAGGGTTGTTAATCCACCCTGAACT 143 36 100.0 30 .................................... CAAGATACATCTGATTCCTGAGAGCCCCCT 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GTTCCAAAACAAAAAAGTTTGTAAAAAGGGTTGACAAAG # Right flank : CGTAGCTGAATGGCTAATAGTTGTTCTAGCTGTTTTAGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 237984-237816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZQE010000003.1 Streptococcus gordonii strain M5 Sgordonii_M5_DanaHsu_Sia_NO_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 237983 36 100.0 30 .................................... AAGTAAGTTTGATCTTAGTTATCTAAAGAA 237917 36 100.0 30 .................................... GTAGCTGAATGGCTAATAGTTGTTCTAGCT 237851 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGTTCCAAAACGTAGCTGAATGGCTAATAGTTGTTCTAGC # Right flank : CATATTAAGATTTAATTCAATTCAACCATACTAGCTAGAGGTTGGTGGGGAGTTCAAATGAGAAAGCAGATAGAAAAGTTATTAAACAGCGATATAAGCACAAGCGCAATCGCTAAGGGAGCAGGCGTTCCTTGGTCTACAGTAGCAGACCTTAGAAAAGGGAAAACCAGTATCGATAAAATGGCCCTGCTTACAGCCGAGAAATTAAATGATTTTGCGGAAGAATTAGAAGCGGAAAAGGACGATGAGCTTTACAATTAATCTATCCAAAAAAAACCACCTATTAGGTGGTTTTTTTCAGTATCTATCACTGCTTACTAGAAGAACTTGAGCTGCTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGAAGCGCTCGATAGCTTGGAGCATCAAAGAGATCAATAGTCGATTCGCCCTTGCGTTGGCTATAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1464-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZQE010000015.1 Streptococcus gordonii strain M5 Sgordonii_M5_DanaHsu_Sia_NO_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1463 36 100.0 30 .................................... CACCTACTTTTTGACCCTGTAGATTTCTAA 1397 36 100.0 30 .................................... GTAACCAAGTAAGCCTATTTTACCTGTTGT 1331 36 100.0 30 .................................... TTTCGTAGTATTTCAGAATACTCCTTTTTA 1265 36 100.0 31 .................................... ATTATCAAAAATTTCACTCACTCCCTTCTTT 1198 36 100.0 30 .................................... ACCCCGTTGTTCCTGTTGCCTTTGTGGTGT 1132 36 100.0 30 .................................... ATCCCGTTGTTCCTGTTGCTTTTGTTGTGT 1066 36 100.0 30 .................................... ACACTCAGGGAAACGTATTAGAAACCATTG 1000 36 100.0 30 .................................... TTGTCAAGCTCTTTAAACGCATACGCTGTG 934 36 100.0 30 .................................... ATCCACGGGAGCTGACCCTTTTAAAGCTGG 868 36 100.0 30 .................................... AGGGCCGTGGTACAATCCAACATATTTTCC 802 36 100.0 30 .................................... TTAAGAATTTTATCATTATAGTAGGGATGC 736 36 100.0 30 .................................... TTGGTTATGAAGTAGTATATGATGCTATTG 670 36 100.0 30 .................................... GATAGTTGAAAGATTTACCATCACCACGAT 604 36 100.0 30 .................................... TCACGGTTATAATGATTGTATTTGTAGTCG 538 36 100.0 30 .................................... GCCTTCTTGAGCGTCACGCCGTCAGCCATG 472 36 100.0 30 .................................... TGGGTTAGCTAATCAATTCAAAAAGACAGT 406 36 100.0 30 .................................... GAAGGATATGCTAAACGCTTACAAGTTCAA 340 36 100.0 30 .................................... AGAATTTTGAACGATATCTCGAGAGTTGCT 274 36 100.0 30 .................................... AATGATGTAATAATATTAGCCCTATGCTTC 208 36 100.0 30 .................................... TATAAGGCGGTAATCATTTCCATATTTTGA 142 36 100.0 30 .................................... AGCGATTTCCGTTTACAGTTTCAACAATTA 76 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCAGAAGTCAAATCCATGATAGAAAAGCTGGTAGCTACGATTACAGAATTACTGGCATTCGAGTGTTTGGAAAACGAATTGGACTTGGAGTACGATGAAATTACCATTCTAGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTTCTTGTTTTCATCAATGTATCCGCCTATCTATCGAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTAAATCAACTAAGGATTTTATTTGTCGAACCTCGAAAAGTCTATGATTTCCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : CGTCTGCCATTTGTTTTGTCCTTTCTTAATAGTTTTAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //