Array 1 1046292-1045718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061072.1 Streptomyces sp. CB00271 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1046291 29 96.6 34 ......................C...... AAGCCCTCGTCCGTGTCTGGGTCGTGGTGCACTT 1046228 29 93.1 32 ..T........A................. GTGTTCAAGGGCGCGGGATTCGGCAAGGTCTA 1046167 29 100.0 30 ............................. CCGAACCAGCCCCCGCACTGGTCGCACCGC 1046108 29 82.8 32 AA.......A..GA............... TCGGGGAGCCTCTGGCGGACCAGGGCGCCGTC 1046047 29 86.2 32 .....AC......C.A............. GAACAACGGCGTTCAGCGTCGTAGCAGTCGGC 1045986 29 82.8 32 ..............G.......GCG...A GCGGTCGGCGGATAGTCAGCGACGTACAGTGT A [1045967] 1045925 29 93.1 32 ....C..T..................... CCCCGGACCATGGGCGGTACGACGAATACGGG 1045864 29 100.0 32 ............................. TCACTCGACTCCGTCCTCAGCACGGCGGCCAA 1045803 29 75.9 28 .C.....T............A.ACG...A GCGGTCCGCGGACAGTGAGCGATGGTGT 1045746 29 86.2 0 ....A..T...................GC | ========== ====== ====== ====== ============================= ================================== ================== 10 29 89.7 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAAATTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGGTGGCTAAGGCCCCCGAGCGGTTCGGTGTAGATCCCGAGCAGGCCGCGGCGCATGCCCGGTTCTCCGTCGCCACCGCCGAGGTGCACCTCGCACTCCTGGAGGACACCGTCATCCCGCACCTGGGAGCAGGTGGGGCAGCCGACCGGACTGCTGAGTACCAGCTGCGGCTCCTCGCCGCCCCCTACGTCGAGCACAAGGACTACCCGCACGACTAGCGCTCGACGGCAAGTCCCCTGCCAAGGTGGTGACCTCGGCTACAGGTCACCGACGAAGTCGCCCCCTCCGCCGCTCCCCCCACGAGTTCCC # Right flank : CCGTGACGCGGGCGGCCTCGTTCCCTGCCCCGACAAGGTCCACCGCAGCTACCGACGGCGGTACAATTCCCAATTCCACCGCTACGTGACCGTGGCGCTGGCCCACCGCGCCGACCTCACCAATGACCGCTCCATCCGGCCCGGGCTCGCCGCAGCCGCCCGCAGGGCCGCGATCTCTGCCGGGCCGCAGAACCACCACGGCGGCTAGCAGCCGTGTCGGCGGGCGTGAGCGAACACCACACCGCCCTCCCTATCCGGAACGGATAGGGAGGGCGGTGAGCGTAGCCGCCAGCCGCAGACCGGAACCCGACCGGGAACGCATCGTGTGAGACTCGACGGCCTGCGACGGGGTCAGGAACGACGTATTGCTCCTGACGCAAACAGCTGGACCAGGTCGAGGCGACGCGGACGGCCATGGCTGCCTCCGGCACGGTCTCGTCCCTGGTCTCTTGCAGGTTGCCGTGCCGGCCGCCAGCGTCGCGGCCCAGCGTCGGAACGAG # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1048210-1047094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061072.1 Streptomyces sp. CB00271 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1048209 29 72.4 33 .A...CC.T......A...GC.......C GTCGTCGGCACGGTCAGCAAGGAATTCCACGGG 1048147 29 79.3 30 .C...A.A...AG............C... CGTCACCAATAAATACACCGCACTGTTCGC 1048086 29 79.3 32 C....C....T.AA.........A..... ACGGAGGCGGCGCTGTTCGCGGCGTCGCTGCT 1048025 29 93.1 32 .....C............A.......... ACGTACCTGGCGAACCAGCTGCTCCGGGTTTC 1047964 27 89.7 27 .....C..--................... TACGCCGAGCGCGGGATGTACGTTCAC 1047910 29 89.7 32 C....C........G.............. AACGCGGTCGGCGCGTACGGCGCCTTCACCCG 1047849 29 89.7 32 .....C..TA................... AAGTAGTCGACGGCGCGCAGGTCCCACCAGCG 1047788 29 89.7 32 .....C.....AT................ CCGAGGAGCGCGGCTCCGACGCCGTCGCTGGC 1047727 29 93.1 32 .....C....T.................. AGGCTGGCCGCCGCCGCGCGGGTGTCTGATCC 1047666 29 82.8 32 .....C..T...G.C....G......... CAGGCCGGTTGGCCGGAGTACATGTCGGCCGT 1047605 29 86.2 32 .....C.......A..........GC... GGCACTCCCTACGCGATCGTGCCGACGACGCT 1047544 29 79.3 27 .G...C..T.G..C.T............. CCCGCCGTGGCTCTACACGGTAATCCC 1047488 29 89.7 32 ..A..C...................T... ACCCGAGAGGTCGAGGCGGCGGCGGCCGCGGC 1047427 29 100.0 32 ............................. GTGATGGGCGGAGCGTTCCGCGTCGACCGCGT 1047366 29 100.0 32 ............................. CTCGGCTACCCCGACCTCGCGACGATCGCCCT 1047305 29 100.0 32 ............................. CCCGCGTACGCCGACCCGCACCTCGGCACCCC 1047244 29 96.6 32 .....C....................... ATCCCGCTCAACGAGTACGACCGGCTGCGGCA 1047183 29 89.7 32 .....C.....A.A............... ATCAGCACGACGCCGTGAGCGTCGCAGATGCG 1047122 29 93.1 0 .....C...................A... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 89.1 31 GTGCTTTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GAGCCGTTGCACATCACCGCCCACCCGCTCGCCACTGTACGAGGCCAGCACGGTTCCAAGGGCCCTGTTGCAAAACAGAGAATTCAGCATGCCCGCACGCAATTCGATGGGACGGCCCGAGTCCTCGACGCCGAACTGCTTCGCGAAAAGATCGCTACAGGCATCGGGCGCGGAAAAGCATATGGATGCGGACTTCTCAGCATTGCTCCCGCTTGATAAATTCAACCAGGTGCCGACCGAATCCGTGCCGGGCTCCTGGTCGCAGTGCTCCTACACGGCAGCGACCTCCACATTTCCTCCATGGCACCCCTTGCGTGGGAATGGGAATAAGCCACCTACCAGAGTAAGTGTTTATACGGAAGGTGGCGTTGTCGTCCGCGTGGGAAAGTTAATTGACCCGCTTGGTGTGAGTTGTCTGCGCGACTACCTCCGGTCAAATTCCGCTCGCGCGGAAAGCGGCGGAATGACGCCGAGCTTTGTAAGGCGAGGTAGCGAAGAGA # Right flank : GTCCGCGACCTCAGCGACGGGGCTTCTGGGCGGTGGTGCCGACGGCTTCCTCGACCACCTCAGCGGCTTCGCGAAGGATCGCAGCGTGGCCCACAAGTTCGGGGTCGACCTGCGGCGAGGACGCGCAACTGGGCGGCAACTCCGTGGCCGAAGAACTGCCGCACGTACCTGCCCTCGAAGTACGCCATCACAGCATCCAGCGTGGTTCGGGCATCTTCAGTTCTCCTCGGGTTGCGGGCCGCCGTGCCGTACACAGCGGCCCAGGGGCGTTGGTTCGGCAGGTGGCACACGCCGTCGATCTCGCGGGGCGTCACGGTCTGGGTGAACAGGGGGACGTGAAATTGAGACCATCATCCAGATCGTCAATCCGTCGCTGCTCGACGACCTCCGCGAGCAGCAGAACACCGGGAGCCCTTCATGACCGACGCCTTGGTGGCCTTCCTCCGGGCGCGGCTCGACGAGCAGCTGGAGAAGGCCCGCTTCGCAAGCAGCACGGTGGC # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2759935-2760147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061072.1 Streptomyces sp. CB00271 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2759935 29 100.0 32 ............................. GTCGTCGAGCTGTTCGCCGACGGCATCACGTA 2759996 29 100.0 32 ............................. CCAGCAGCGCAGCGAGCATGTCCGCGGGCGTC 2760057 29 100.0 32 ............................. ACACTTGCTCACATGGCGAACGTCGTGGGCGT 2760118 29 86.2 0 ......................A..G.AA | T [2760136] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : CGGAGGGGAGGCGGCGAATCCCTTCTGAGACCGGTAAGTCAGTGGGCACCCACGGCGTCGTGTGGAGCTGGATTCCTGTTACTGGCGGTGCTGTGCCACGCTCTTCCGAGTCACTGCGACAGTGTGATCAGACCCAACGACCATTGCGTTGCCGCCTCATGCCACACGCAAACACGCCTACCCCGACAACCCCACGCCCTCCCGAGCGCTGCCGCTGCATCCAATAGACGGCCCCACACGAGGCACGGCTCGCCTTGCCCCTCTCGTGCTCCCTGCCTCATAACAGCCCATCTAACAGCACATCTAGATGTATTGTTTGGCGCCCAGTCAGGCAGCAGAGTCGGTCAGCTTCCACTGACAGAATGAGCTGACCAGCCACTCCTACCCTCTGAAAGATGGCGCCGTCTACAGTGCGCCCCATGCCTACTACCTGCCCGGTGCCGAATACCACTCGTGGTAAAGAAGCGGCAAAGCACCTCTAACGCTGCAGGTCAGGAAGG # Right flank : ACAAGACGGTCAGCTCGCTTAGTGCAACGGCCCGAACAAGGCCTGCTCTGGTGCACGGACCCAGCGCTGTCCCCGTGGAAAAGGTCAACTGCGAGGGCCTGTATATGCGCATACACGCCCTCGCCGCGCACCTGACGGGCCCGCTGTCCCTGCGCCTGCCGCCGCGGCACGTGACCGTCCTCGAGAGTCCGGCAGCCGCCCACACCATGGTGAGCGAGGTGAGACGGGCGCCGCCGAAGCCACCGACACCCTGATCGTCTACTTCGCCGGCCATGGGCTGATCGACCCGCAGGACACACTCAGCCTGGCACTGCCCCACACCGAGTCGGGGCGCGTGGAGACCGGCCTGCCCTACGACTGGCTCCGCCAGGTCCTCCTCATGGACTCCCGGGCCGAGCGCCACGTGGTGATCCTGGGCTGCTACTACAGCGGGCTGGCCCTGGGGCGGATGAACGCCGCGTCGCCCGGTCTTGCCGACCAGGCTTCGGTCGAGGGCAGCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4245919-4244975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061072.1 Streptomyces sp. CB00271 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4245918 29 100.0 32 ............................. TCGATGAACTTCGTCGGCGCAACGTAGGTCCC 4245857 29 100.0 32 ............................. CCGCAGTGCGCCGCGCTCCCGACCCGCCAGTA 4245796 29 100.0 33 ............................. ATGTACGCCATCCCGGCCGTGGACTCGCCGTCC 4245734 29 100.0 32 ............................. GCTTTCCGGAAACGTCGATACCGTCCTGAATC 4245673 29 100.0 32 ............................. GGGCGCTCCTCGATGTGCACCCCGTGGTTCTT 4245612 29 100.0 32 ............................. CTGCACAAGGTAAGTCGCGGAAGAGGCTGGAA 4245551 29 96.6 31 ............................G GCGGCACACCCGGGCGTTCGGCATGGGTGCC 4245491 29 100.0 32 ............................. CGGCGCGTCCTGGAACTCGCCCTCACCGGCAA 4245430 29 100.0 32 ............................. AGGTCACCCCGAAGGTCCAGCTCCTCGAACCC 4245369 29 100.0 32 ............................. ACTTCCAGCCATCCGGCCGGATACCACCAGGG 4245308 29 100.0 32 ............................. TGGCCCTGGGGAAGGGCCCGCACCGGTCTGGT 4245247 29 100.0 32 ............................. GTGTGCTGCGGCAACTTCACCGTGGAGAAGAC 4245186 29 89.7 32 ....C.............A..T....... AGGTCACACAGGGGCCCGTCTGCGGGTTCGTG C [4245177] 4245124 29 86.2 32 ..A.C................T..T.... TGCTAGAAATGCATCCTCGAAGGATGCATTAC 4245063 29 86.2 32 ..C...........C......T..T.... GGCGACACAAAACCATCGGTCCCGATCGTGGG 4245002 28 86.2 0 ..C.....................A-..G | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.6 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGGTGACCGTCATCGTCCTCACCAACTGCCCGGTCGGCCTCAGGGGCTTCCTCACCCGCTGGCTGCTGGAAATCTCCCCGGGCGTGTTCCTAGGCTCTCCGTCCACCCGCATTCGCGACCTCCTGTGGGCCGAAGTCCGCGAGCACGCCGGCCAGGGCCGCGCTCTGCTCGCCTACCAGACGGACAACGAGCAGGGCTACGCCTTCAAAACCCACGACCACTCCTGGCACCCGACCGACCACGAGGGCCTCACCCTGATCCACCGCCCGAGCGTCCATGCCCGGCGGGCGGGCAGTCCGGAGAGTGCGACGGCCGACGTTCCCCAACAGGGCTGGAGCAAGGCGTCGAAACGACGGAGGTTTGGGGGCGGAAGGTAGGGGCGGCTACGAGGGCTGAAGCAGGCCAGCGGACACCACTGGACAGGATGATTCCTTATGCCCGATTTCAAAGAAGTGGGTAAAAACAGGCTCCTGCCCGCATAGAACACCAGGTCAGTGACT # Right flank : TCAGCTCGCAGAGCCCTCGAACGGGTGACAGACGTGATTCCCGGACACCTGCTGGTTGCGCGCCAGCGCGGCGGGATGCGTCACAGACCCGTCTCGGACCTTGACGGAAGCAGGATGTAATGACCAGTGCGCCGGACTACAGCCAAGGCATCAACACCGAGCGCGCCCTTAAGTTCGCCGTGCAGCGCATTCGCGGGGACCGTGTCCAGATCATTGAGGGGATCATCGAACCGGTGTCACCGACGTGGGACCACGAGCGCGCTGCCAAACTCGTACGCCGGCAAATCGAGAGGCGAGTTGACGAGCTCGGCTGCGTGGAAGGGTCCGGGAATCTGGACCTGCCCGGGTCCTCGAACTGGTACGTCCCGGACATCGCTGTTGTGCCGGAGGATCTGGCCAAAGGAGGCAGCACCCTGCTTCCCGACCAGACGCTGCTGATCGTAGAAGTGACCTCCGAGTCGAACGCGGAGACGGACCGGGTCGTCAAGCGACGTAGGTAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4257887-4255905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061072.1 Streptomyces sp. CB00271 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4257886 29 100.0 32 ............................. CTCATCGTCCCCATCGAGGACCCGCGCTTCGG 4257825 29 100.0 32 ............................. TCAGACCAAGGACGCTCATGCTCACCTTCTTC 4257764 29 96.6 32 ............................G GAGGTGGCAGACCTTCTCGCGTGGACGGCCGG 4257703 29 100.0 32 ............................. ACCCGGTACGCGATGGCCCTCCGCGACGCGGT 4257642 29 100.0 32 ............................. TCCTTGCGCATGATCCCCAACGCGACGCCGAC 4257581 29 100.0 32 ............................. GCCCTGAGTCGCCTCTACAGCGGCGAGGAGCT 4257520 29 100.0 32 ............................. GGCAGAACACCCTCCTGGAGTGGGACCTGAGC 4257459 29 100.0 32 ............................. CCTGCACATCCGTGACCTGGACGGCCTCGAAC 4257398 29 100.0 32 ............................. CGATGACCTTCGAAGGCCACTACGGCAGGGGC 4257337 29 100.0 32 ............................. CGATGACCGTCGAAGGCCACTACGGCAGGGGC 4257276 29 100.0 32 ............................. AGACCGTCGCGGTTGAGCTGCCAGCCGAAGGT 4257215 29 100.0 32 ............................. CCGCGGACACGATGACGGTCATGTTCGGGGTC 4257154 29 100.0 32 ............................. ACCGTCACCGGCCCGTGGCCGTGCCACAGAGC 4257093 29 100.0 32 ............................. CCCTCCGCGACCATGGTCGACTTCCCGACCTG 4257032 29 100.0 32 ............................. GCGGCGTTGAGCTTCGGGATGCCCAGGTGCCG 4256971 29 100.0 32 ............................. ACAACTGGGAGGCATCGTGTCCACACTCGCCA 4256910 29 100.0 32 ............................. TCGACAACCGCGAGGACGACGAGATCCCCGAG 4256849 29 100.0 32 ............................. GTAACGGGAGGCACCACGGCTCTAGTGGTCAT 4256788 29 100.0 32 ............................. GTGTGGGCGACGGGGAGCAGGAGCCAGAACGT 4256727 29 100.0 32 ............................. CACCTTGGGGAGGTCGTCAAGTTTGAGACGCG 4256666 29 100.0 32 ............................. TTCTCGGACCCGGCCCGGAGTGACTGCGGGTA 4256605 29 100.0 32 ............................. TGGGCGTACTCGGCGGCGTCGATGGCCTCGAA 4256544 29 100.0 32 ............................. TCGCGAAAGGCGGCGCTGTCCCTCGACGTCGT 4256483 29 100.0 32 ............................. CTCCAGCACATCGCCCGCCACGACCCGGCCCG 4256422 29 100.0 33 ............................. CCGTGGTGCAGAAGGTCCACCGAGGAGCCGCTG 4256360 29 96.6 32 .......A..................... GACACGCTCCGGTCCATTGAGACGAGGGGGTG 4256299 29 100.0 32 ............................. GGCTACGCGAACGGACGGTGCGCGGCGGAGTC 4256238 29 100.0 31 ............................. TCGGCCGGGGCGCCTTTTCGGCGGCGGCGGC 4256178 29 100.0 32 ............................. CTGCGCGGCATTTCGGGCGAGGCTGGGCGAGT 4256117 29 100.0 32 ............................. AACGAGCTGGAGGCCGCGAAGCGCCGGGGTCG 4256056 29 93.1 32 .............AC.............. CGACAGAAGTCCGACCAGGACCCGGCCGGCTG 4255995 29 86.2 34 .............A.......A..TA... CTGATCCGGGGGATCGCCGGTTTGGTAAACCGGC 4255932 28 75.9 0 ...-.........C...A...CA....GG | ========== ====== ====== ====== ============================= ================================== ================== 33 29 98.4 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCACGGCCGGAAGCCCCTCGCCCGGCGCACCGACCCCCGCCCACCACCTCCTGGTGGAATGCACGGAATGCGGCCGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGTACGGCACACTCCGGAGCCCCCGAGCACTCGCCCCGCCCCGCCGACATCGCCGACGTCAAAGCCCACATGAACAACCTCCGCGACCTGCTCAAACCCGTCTGACCCCGCCTCCGTCGACAAGCCTGCCCCCTCTCACGGTCCTCGCCGAAGCCATCAGCAGGGTGCGCACACGAGACCAAAGCCCGCTTGCGGCGGGACGATAACCACCTTCCTCCTCAAGACTTCGCCCCCTCCCGGCCCCGGAAAGGGCAGAATCACTCCCGAGCCTGCAGAGGCCCAAGCAGAACCATTCGCGCCACAGAGGGAAATATGTCCGTTTCTCAAGAAGTGGGTAAATTCAGCCCCGCCGCCACATAGACCCGCAGGTCACGAACT # Right flank : AGTCAAGTAGTACTGCCCAAAACACAGTTGAATCTCGCGCGATATGGCACCCGCACTATTACTGCTCCCGCCACGCCCCCACACTCCGCGAGTCGACCGGCGGAGCCCGGCGACCAGGCCCACCGCCGGCTCCAGGTTGCACACCAAGCCCGGCGCACGTCAGCAGATCACTCTCCCCTCGGTCACTCTCGGTCAAATAGGCGCACTTGCGTTCACCTTCGACCATTGCAACCGCCGTATGGCTTCGACGATGTCCAATACGCCCATGAGCCGCGATGATCCGGAAAGCGTGTCGGCTTACGCCCGCCTGTCCCCCGCAACCCGCACCGCCTGGGGCAAGCACGACCGGCTGACCGAACAGTGGCTCCCCCTCTGGCGGCACATGGCGGACAGCGCCGCCGTGGCAGGTCGGCTCTGGGACGAGTGGGTGCCCGACAACGTCAAAGCGCTCGTCGCGGACGCGTTCCCCCAAGGTGCCCGGGACGCCCAGCAAGTGGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //